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David A. Hafler

Yale School of Medicine

132H-index
684Paper Count
6.9WCitation Count
Published Papers 265
Publication Date
Virus reactivation in acute and long COVID-19
errNature
IF48.5
err2026-08-05
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errOAAI
errCole Maguire; Jing Chen; Nadine Rouphael; Brinkley A. Morse; Annmarie Hoch; Harry Pickering; Hoang Van Phan; Abigail Glascock; Victoria Chu; Ravi Dandekar; David Corry; Farrah Kheradmand; Lindsey R. Baden; Rafick-Pierre Sekaly; Grace A. McComsey; Elias K. Haddad; Charles B. Cairns; Bali Pulendran; Ana Fernandez-Sesma; Viviana Simon; Jordan P. Metcalf; Nelson I. Agudelo Higuita; William B. Messer; Mark M. Davis; Kari C. Nadeau; Monica Kraft; Chris Bime; Joanna Schaenman; David Erle; Carolyn S. Calfee; Mark A. Atkinson; Scott C. Brakenridge; Lauren I. R. Ehrlich; Ruth R. Montgomery; Albert Shaw; Catherine L. Hough; David Hafler; Alison D. Augustine; Patrice M. Becker; Bjoern Peters; Al Ozonoff; Seunghee Kim-Schulze; Florian Krammer; Steven E. Bosinger; Walter Eckalbar; Matthew C. Altman; Michael Wilson; Leying Guan; Steven H. Kleinstein; Kinga K. Smolen; Elaine F. Reed; Ofer Levy; Holden Maecker; Peter Hunt; Hanno Steen; Joann Diray-Arce; Charles R. Langelier; Esther Melamed
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Anti-CD20 B cell depletion is associated with elevated mucosal-originating circulating regulatory IgA B cells in multiple sclerosis
err2026-07-22
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PREAI
errTradite Neziraj; Elisabeth Pössnecker; Angela A. Wang; Paul Saary; Adrian-Minh Schumacher; Florian Ingelfinger; Amandine Mathias; Edoardo Galli; Marco Häfelfinger; Michelle Zuo; Samuel Jones; Vasiliki Pantazou; Joep Killestein; Sabine Schädelin; Pascal Benkert; Cristina Granziera; Caroline Pot; Antje Bischof; Jan Hendrik Niess; Magdalena Filipowicz Sinnreich; Tobias Derfuss; Charlotte E. Teunissen; Jens Kuhle; David A. Hafler; Renaud Du Pasquier; Yoshiaki Yasumizu; Jennifer L. Gommerman; Anne-Katrin Pröbstel
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Author Correction: Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors
err2026-02-23
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errOAAI
errNaresh Doni Jayavelu; Hady Samaha; Sonia Tandon Wimalasena; Annmarie Hoch; Jeremy P. Gygi; Gisela Gabernet; Al Ozonoff; Shanshan Liu; Carly E. Milliren; Ofer Levy; Lindsey R. Baden; Esther Melamed; Lauren I. R. Ehrlich; Grace A. McComsey; Rafick P. Sekaly; Charles B. Cairns; Elias K. Haddad; Joanna Schaenman; Albert C. Shaw; David A. Hafler; Ruth R. Montgomery; David B. Corry; Farrah Kheradmand; Mark A. Atkinson; Scott C. Brakenridge; Nelson I. Agudelo Higuit; Jordan P. Metcalf; Catherine L. Hough; William B. Messer; Bali Pulendran; Kari C. Nadeau; Mark M. Davis; Linda N. Geng; Ana Fernandez Sesma; Viviana Simon; Florian Krammer; Monica Kraft; Chris Bime; Carolyn S. Calfee; David J. Erle; Charles R. Langelier; Leying Guan; Holden T. Maecker; Bjoern Peters; Steven H. Kleinstein; Elaine F. Reed; Alison D. Augustine; Joann Diray-Arce; Patrice M. Becker; Nadine Rouphael; Matthew C. Altman
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Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors
err2026-01-03
err0
errOAAI
errNaresh Doni Jayavelu; Hady Samaha; Sonia Tandon Wimalasena; Annmarie Hoch; Jeremy P. Gygi; Gisela Gabernet; Al Ozonoff; Shanshan Liu; Carly E. Milliren; Ofer Levy; Lindsey R. Baden; Esther Melamed; Lauren I. R. Ehrlich; Grace A. McComsey; Rafick P. Sekaly; Charles B. Cairns; Elias K. Haddad; Joanna Schaenman; Albert C. Shaw; David A. Hafler; Ruth R. Montgomery; David B. Corry; Farrah Kheradmand; Mark A. Atkinson; Scott C. Brakenridge; Nelson I. Agudelo Higuit; Jordan P. Metcalf; Catherine L. Hough; William B. Messer; Bali Pulendran; Kari C. Nadeau; Mark M. Davis; Linda N. Gen; Ana Fernandez Sesma; Viviana Simon; Florian Krammer; Monica Kraft; Chris Bime; Carolyn S. Calfee; David J. Erle; Charles R. Langelier; Leying Guan; Holden T. Maecker; Bjoern Peters; Steven H. Kleinstein; Elaine F. Reed; Alison D. Augustine; Joann Diray-Arce; Patrice M. Becker; Nadine Rouphael; Matthew C. Altman
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A multiomics recovery factor predicts long COVID in the IMPACC study
err2025-11-03
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errOAAI
errGabernet, Gisela; Maciuch, Jessica; Gygi, Jeremy P.; Moore, John F.; Hoch, Annmarie; Syphurs, Caitlin; Chu, Tianyi; Jayavelu, Naresh Doni; Corry, David B.; Kheradmand, Farrah; Baden, Lindsey R.; Sekaly, Rafick-Pierre; McComsey, Grace A.; Haddad, Elias K.; Cairns, Charles B.; Rouphael, Nadine; Fernandez-Sesma, Ana; Simon, Viviana; Metcalf, Jordan P.; Higuita, Nelson I. Agudelo; Hough, Catherine L.; Messer, William B.; Davis, Mark M.; Nadeau, Kari C.; Pulendran, Bali; Kraft, Monica; Bime, Chris; Reed, Elaine F.; Schaenman, Joanna; Erle, David J.; Calfee, Carolyn S.; Atkinson, Mark A.; Brakenridge, Scott C.; Melamed, Esther; Shaw, Albert C.; Hafler, David A.; Augustine, Alison D.; Becker, Patrice M.; Ozonoff, Al; Bosinger, Steven E.; Eckalbar, Walter; Maecker, Holden T.; Kim-Schulze, Seunghee; Steen, Hanno; Krammer, Florian; Westendorf, Kerstin; Peters, Bjoern; Fourati, Slim; Altman, Matthew C.; Levy, Ofer; Smolen, Kinga K.; Montgomery, Ruth R.; Diray-Arce, Joann; Kleinstein, Steven H.; Guan, Leying; Ehrlich, Lauren I. R.
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Uncovering differences in local and systemic immunity in human primary and metastatic brain tumors
err2025-11-01
err0
errOAAI
errLu, Benjamin; Yahsi, Berkay; Lucca, Liliana; DiStasio, Marcello; Liu, Yang; Gu, Jianlei; Bhata, Sagar; Kasbe, Mithila; Coburn, Jack; Arnal-Estape, Anna; Zhao, Hongyu; Moliterno, Jennifer; Chiang, Veronica; Omuro, Antonio; Lee, Mark; Hafler, David
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Deciphering the key regulatory factor of CXCL13+human CD4 T cells
err2025-11-01
err0
PREAI
errCheru, Nardos Tesfaye; Hafler, David A.; Sumida, Tomokazu S.
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Author Correction: TLR7 induces anergy in human CD4+ T cells
err2025-10-14
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errOAAI
errMargarita Dominguez-Villar; Anne-Sophie Gautron; Marine de Marcken; Marla J Keller; David A Hafler
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Differential results of genetic risk scoring for multiple sclerosis in European and African American populations
err2025-09-24
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PREAI
errCyprien A Rivier; Leqi Xu; Santiago Clocchiatti-Tuozzo; Hongyu Zhao; Lucila Ohno-Machado; David A Hafler; Guido J Falcone; Erin E Longbrake
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The subfornical organ is a nucleus for gut-derived T cells that regulate behaviour
errNATURE
IF48.5
err2025-05-28
err0
PREAI
errYoshida, Tomomi M.; Nguyen, Mytien; Zhang, Le; Lu, Benjamin Y.; Zhu, Biqing; Murray, Katie N.; Mineur, Yann S.; Zhang, Cuiling; Xu, Di; Lin, Elizabeth; Luchsinger, Joseph; Bhatta, Sagar; Waizman, Daniel A.; Coden, Mackenzie E.; Ma, Yifan; Israni-Winger, Kavita; Russo, Anthony; Wang, Haowei; Song, Wenzhi; Al Souz, Jafar; Zhao, Hongyu; Craft, Joseph E.; Picciotto, Marina R.; Grutzendler, Jaime; Distasio, Marcello; Palm, Noah W.; Hafler, David A.; Wang, Andrew
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Circulating tumor-reactive KIR+CD8+ T cells suppress anti-tumor immunity in patients with melanoma
err2024-11-28
err0
PREAI
errLu, Benjamin Y.; Lucca, Liliana E.; Lewis, Wesley; Wang, Jiping; Nogueira, Catarina V.; Heer, Sebastian; Rayon-Estrada, Violeta; Axisa, Pierre-Paul; Reeves, Sarah M.; Buitrago-Pocasangre, Nicholas C.; Pham, Giang H.; Kojima, Mina L.; Wei, Wei; Aizenbud, Lilach; Bacchiocchi, Antonietta; Zhang, Lin; Walewski, Joseph J.; Chiang, Veronica; Olino, Kelly; Clune, James; Halaban, Ruth; Kluger, Yuval; Coyle, Anthony J.; Kisielow, Jan; Obermair, Franz-Josef; Kluger, Harriet M.; Hafler, David A.
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Single-cell transcriptomic and proteomic analysis of Parkinson's disease brains
err2024-10-30
err1
errOAAI
errZhu, Biqing; Park, Jae-Min; Coffey, Sarah R.; Russo, Anthony; Hsu, I-Uen; Wang, Jiawei; Su, Chang; Chang, Rui; Lam, TuKiet T.; Gopal, Pallavi P.; Ginsberg, Stephen D.; Zhao, Hongyu; Hafler, David A.; Chandra, Sreeganga S.; Zhang, Le
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Cholesterol promotes IFNG mRNA expression in CD4+ effector/memory cells by SGK1 activation
err2024-10-04
err0
errOAAI
errHanin, Aurelie; Comi, Michela; Sumida, Tomokazu S.; Hafler, David A.
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An autoimmune transcriptional circuit drives FOXP3+ regulatory T cell dysfunction
err2024-08-28
err2
PREAI
errSumida, Tomokazu S.; Lincoln, Matthew R.; He, Liang; Park, Yongjin; Ota, Mineto; Oguchi, Akiko; Son, Raku; Alice, Y., I; Stillwell, Helen A.; Leissa, Greta A.; Fujio, Keishi; Murakawa, Yasuhiro; Kulminski, Alexander M.; Epstein, Charles B.; Bernstein, Bradley E.; Kellis, Manolis; Hafler, David A.
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Single-Cell Transcriptomic Analyses of Brain Parenchyma in Patients With New-Onset Refractory Status Epilepticus (NORSE)
err2024-07-01
err2
errOAAI
errHanin, Aurelie; Zhang, Le; Huttner, Anita J.; Plu, Isabelle; Mathon, Bertrand; Bielle, Franck; Navarro, Vincent; Hirsch, Lawrence J.; Hafler, David A.
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Neutrophils insert elastase into hepatocytes to regulate calcium signaling in alcohol-associated
err2024-06-25
err0
errOAAI
errOgino, Noriyoshi; Leite, M. Fatima; Guerra, Mateus T.; Kruglov, Emma; Asashima, Hiromitsu; Hafler, David A.; Ito, Takeshi; Pereira, Joao P.; Peiffer, Brandon J.; Sun, Zhaoli; Ehrlich, Barbara E.; Nathanson, Michael H.
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Genetic mapping across autoimmune diseases reveals shared associations and mechanisms
err2024-05-13
err2
PREAI
errLincoln, Matthew R.; Connally, Noah; Axisa, Pierre-Paul; Gasperi, Christiane; Mitrovic, Mitja; van Heel, David; Wijmenga, Cisca; Withoff, Sebo; Jonkers, Iris H.; Padyukov, Leonid; Beecham, Ashley H.; Patsopoulos, Nikolaos A.; Cotsapas, Chris; Booth, David; Goris, An; Oturai, Annette; Saarela, Janna; Fontaine, Betrand; Hemmer, Bertrand; Claes, Martin; Zipp, Frauke; D'Alfonso, Sandra; Martinelli-Boneschi, Filippo; Taylor, Bruce; Harbo, Hanne F.; Kockum, Ingrid; Hillert, Jan; Olsson, Tomas; Oksenberg, Jorge R.; Hintzen, Rogier; Barcellos, Lisa F.; Alfredsson, Lars; Esposito, Federica; Martin, Roland; Haines, Jonathan L.; Pericak-Vance, Margaret A.; Ivinson, Adrian J.; Stewart, Graeme; Hafler, David; Hauser, Stephen L.; Compston, Alastair; Mcvean, Gil; De Jager, Philip; Sawcer, Stephen J.; Mccauley, Jakob L.; Rich, Stephen S.; Graham, Robert R.; Gaffney, Patrick M.; Langefeld, Carl D.; Vyse, Timothy J.; Hafler, David A.; Chun, Sung; Sunyaev, Shamil R.; Cotsapas, Chris
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Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study
err2024-01-03
err22
errOAAI
errOzonoff, Al; Jayavelu, Naresh Doni; Liu, Shanshan; Melamed, Esther; Milliren, Carly E.; Qi, Jingjing; Geng, Linda N.; Mccomsey, Grace A.; Cairns, Charles B.; Baden, Lindsey R.; Schaenman, Joanna; Shaw, Albert C.; Samaha, Hady; Seyfert-Margolis, Vicki; Krammer, Florian; Rosen, Lindsey B.; Steen, Hanno; Syphurs, Caitlin; Dandekar, Ravi; Shannon, Casey P.; Sekaly, Rafick P.; Ehrlich, Lauren I. R.; Corry, David B.; Kheradmand, Farrah; Atkinson, Mark A.; Brakenridge, Scott C.; Higuita, Nelson I. Agudelo; Metcalf, Jordan P.; Hough, Catherine L.; Messer, William B.; Pulendran, Bali; Nadeau, Kari C.; Davis, Mark M.; Sesma, Ana Fernandez; Simon, Viviana; van Bakel, Harm; Kim-Schulze, Seunghee; Hafler, David A.; Levy, Ofer; Kraft, Monica; Bime, Chris; Haddad, Elias K.; Calfee, Carolyn S.; Erle, David J.; Langelier, Charles R.; Eckalbar, Walter; Bosinger, Steven E.; Mcenaney, Kerry; Barton, Brenda; Lentucci, Claudia; Saluvan, Mehmet; Chang, Ana C.; Hoch, Annmarie; Albert, Marisa; Shaheen, Tanzia; Kho, Alvin T.; Thomas, Sanya; Chen, Jing; Murphy, Maimouna D.; Cooney, Mitchell; Hayati, Arash Nemati; Bryant, Robert; Abraham, James; Presnell, Scott; Jancsyk, Tomasz; Maguire, Cole; Lee, Brian; Fourati, Slim; Esserman, Denise A.; Guan, Leying; Gygi, Jeremy; Pawar, Shrikant; Brito, Anderson; Fragiadakis, Gabriela K.; Patel, Ravi; Tebbutt, Scott J.; Overton, James A.; Vita, Randi; Westendorf, Kerstin; Thyagarajan, Rama V.; Rousseau, Justin F.; Wylie, Dennis; Triplett, Todd A.; Kojic, Erna; Chinthrajah, Sharon; Ahuja, Neera; Rogers, Angela J.; Artandi, Maja; Yendewa, George; Powell, Debra L.; Kim, James N.; Simmons, Brent; Goonewardene, I. Michael; Smith, Cecilia M.; Martens, Mark; Sherman, Amy C.; Walsh, Stephen R.; Issa, Nicolas C.; Salehi-Rad, Ramin; Dela Cruz, Charles; Farhadian, Shelli; Iwasaki, Akiko; Ko, Albert I.; Anderson, Evan J.; Mehta, Aneesh K.; Sevransky, Jonathan E.; Leligdowicz, Aleksandra; Matthay, Michael A.; Singer, Jonathan P.; Kangelaris, Kirsten N.; Hendrickson, Carolyn M.; Krummel, Matthew F.; Woodruff, Prescott G.; Anderson, Matthew L.; Guirgis, Faheem W.; Drevets, Douglas A.; Brown, Brent R.; Siegel, Sarah A. R.; Lu, Zhengchun; Mosier, Jarrod; Kimura, Hiroki; Khor, Bernard; Rahman, Adeeb; Stadlbauer, Daniel; Dutta, Jayeeta; Gonzalez-Reiche, Ana Silvia; van de Guchte, Adriana; Carreno, Juan Manuel; Singh, Gagandeep; Raskin, Ariel; Tcheou, Johnstone; Bielak, Dominika; Kawabata, Hisaaki; Xie, Hui; Kelly, Geoffrey; Patel, Manishkumar; Nie, Kai; Yellin, Temima; Fried, Miriam; Sullivan, Leeba; Morris, Sara; Sieg, Scott; van Zalm, Patrick; Fatou, Benoit; Mendez, Kevin; Lasky-Su, Jessica; Hutton, Scott R.; Michelotti, Greg; Wong, Kari; Jha, Meenakshi; Viode, Arthur; Kanarek, Naama; Petrova, Boryana; Zhao, Yujiao; Boddapati, Arun K.; Tharp, Greg K.; Pellegrini, Kathryn L.; Beagle, Elizabeth; Cowan, David; Hamilton, Sydney; Ribeiro, Susan Pereira; Hodder, Thomas; Lee, Serena; Wilson, Michael R.; Alvarenga, Bonny; Rajan, Jayant; Schroeder, Andrew W.; Tsitsiklis, Alexandra; Mick, Eran; Guerrero, Yanedth Sanchez; Love, Christina; Maliskova, Lenka; Adkisson, Michael; Siles, Nadia; Geltman, Janelle; Hurley, Kerin; Saksena, Miti; Altman, Deena; Srivastava, Komal; Eaker, Lily Q.; Bermudez-Gonzalez, Maria C.; Beach, Katherine F.; Sominsky, Levy A.; Azad, Arman R.; Mulder, Lubbertus C. F.; Kleiner, Giulio; Lee, Alexandra S.; Do, Evan; Fernandes, Andrea; Manohar, Monali; Hagan, Thomas; Blish, Catherine A.; Din, Hena Naz; Roque, Jonasel; Yang, Samuel; Sigal, Natalia; Chang, Iris; Tribout, Heather; Harris, Paul; Consolo, Mary; Connors, Jennifer; Bernui, Mariana; Kutzler, Michele A.; Edwards, Carolyn; Lee, Edward; Lin, Edward; Croen, Brett; Semenza, Nicholas C.; Rogowski, Brandon; Melnyk, Nataliya; Woloszczuk, Kyra; Cusimano, Gina; Bell, Mathew R.; Furukawa, Sara; Mclin, Renee; Schearer, Pamela; Sheidy, Julie; Tegos, George P.; Nagle, Crystal; Smolen, Kinga; Desjardins, Michael; van Haren, Simon; Mitre, Xhoi; Cauley, Jessica; Li, Xiaofang; Tong, Alexandra; Evans, Bethany; Montesano, Christina; Licona, Jose Humberto; Krauss, Jonathan; Chang, Jun Bai Park; Izaguirre, Natalie; Rooks, Rebecca; Elashoff, David; Brook, Jenny; Ramires-Sanchez, Estefania; Llamas, Megan; Rivera, Adreanne; Perdomo, Claudia; Ward, Dawn C.; Magyar, Clara E.; Fulcher, Jennifer A.; Pickering, Harry C.; Sen, Subha; Chaudhary, Omkar; Coppi, Andreas; Fournier, John; Mohanty, Subhasis; Muenker, M. Catherine; Nelson, Allison; Raddassi, Khadir; Rainone, Michael; Ruff, William E.; Salahuddin, Syim; Schulz, Wade L.; Vijayakumar, Pavithra; Wang, Haowei; Wunder, Elsio; Young, H. Patrick; Rothman, Jessica; Konstorum, Anna; Chen, Ernie; Cotsapas, Chris; Grubaugh, Nathan D.; Wang, Xiaomei; Xu, Leqi; Asashima, Hiromitsu; Bristow, Laurel; Hussaini, Laila; Hellmeister, Kieffer; Wimalasena, Sonia Tandon; Cheng, Andrew; Spainhour, Christine; Scherer, Erin M.; Johnson, Brandi; Bechnak, Amer; Ciric, Caroline R.; Hewitt, Lauren; Carter, Erin; Mcnair, Nina; Panganiban, Bernadine; Huerta, Christopher; Usher, Jacob; Vaysman, Tatyana; Holland, Steven M.; Abe-Jones, Yumiko; Asthana, Saurabh; Beagle, Alexander; Bhide, Sharvari; Carrillo, Sidney A.; Chak, Suzanna; Ghale, Rajani; Gonzalez, Ana; Jauregui, Alejandra; Jones, Norman; Lea, Tasha; Lee, Deanna; Lota, Raphael; Milush, Jeff; Nguyen, Viet; Pierce, Logan; Prasad, Priya A.; Rao, Arjun; Samad, Bushra; Shaw, Cole; Sigman, Austin; Sinha, Pratik; Ward, Alyssa; Willmore, Andrew; Zhan, Jenny; Rashid, Sadeed; Rodriguez, Nicklaus; Tang, Kevin; Altamirano, Luz Torres; Betancourt, Legna; Curiel, Cindy; Sutter, Nicole; Paz, Maria Tercero; Tietje-Ulrich, Gayelan; Leroux, Carolyn; Thakur, Neeta; Vasquez, Joshua J.; Santhosh, Lekshmi; Song, Li-Zhen; Nelson, Ebony; Moldawer, Lyle L.; Borresen, Brittany; Roth-Manning, Brittney; Ungaro, Ricardo F.; Oberhaus, Jordan; Booth, J. Leland; Sinko, Lauren A.; Brunton, Amanda; Sullivan, Peter E.; Strnad, Matthew; Lyski, Zoe L.; Coulter, Felicity J.; Micheleti, Courtney; Conway, Michelle; Francisco, Dave; Molzahn, Allyson; Erickson, Heidi; Wilson, Connie Cathleen; Schunk, Ron; Sierra, Bianca; Hughes, Trina; Peters, Bjoern; Kleinstein, Steven H.; Reed, Elaine F.; Augustine, Alison D.; Diray-Arce, Joann; Maecker, Holden T.; Altman, Matthew C.; Montgomery, Ruth R.; Becker, Patrice M.; Rouphael, Nadine
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scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profiles
err2023-12-18
err2
errOAAI
errZhu, Biqing; Wang, Yuge; Ku, Li-Ting; van Dijk, David; Zhang, Le; Hafler, David A.; Zhao, Hongyu
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