Mark J. Pallen - Publications, H-index & Citations

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Mark J. Pallen

TERI University

75H-index

356Paper Count

2.0WCitation Count

Published Papers 112

Publication Date

Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome

COMMUNICATIONS BIOLOGY

IF5.1

2022-09-08

OAAI

Ravi, Anuradha; Troncoso-Rey, Perla; Ahn-Jarvis, Jennifer; Corbin, Kendall R.; Harris, Suzanne; Harris, Hannah; Aydin, Alp; Kay, Gemma L.; Le Viet, Thanh; Gilroy, Rachel; Pallen, Mark J.; Page, Andrew J.; O'Grady, Justin; Warren, Frederick J.

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Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021

MICROBIAL GENOMICS

IF4

2022-07-29

OAAI

Merhi, Georgi; Trotter, Alexander J.; Martins, Leonardo de Oliveira; Koweyes, Jad; Le-Viet, Thanh; Abou Naja, Hala; Al Buaini, Mona; Prosolek, Sophie J.; Alikhan, Nabil-Fareed; Lott, Martin; Tohmeh, Tatiana; Badran, Bassam; Jupp, Orla J.; Gardner, Sarah; Felgate, Matthew W.; Makin, Kate A.; Wilkinson, Janine M.; Stanley, Rachael; Sesay, Abdul K.; Webber, Mark A.; Davidson, Rose K.; Ghosn, Nada; Pallen, Mark; Hasan, Hamad; Page, Andrew J.; Tokajian, Sima

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The oesophageal microbiome and cancer: hope or hype?

TRENDS IN MICROBIOLOGY

IF14.9

2022-04-01

OAAI

Kumar, Bhaskar; Lam, Stephen; Adam, Mina; Gilroy, Rachel; Pallen, Mark J.

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The microbial ecology of Escherichia coli in the vertebrate gut

clinical microbiology reviews

IF12.3

2022-02-04

OAAI

Foster-Nyarko, Ebenezer; Pallen, Mark J.

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Leviviricetes: expanding and restructuring the taxonomy of bacteria-infecting single-stranded RNA viruses

MICROBIAL GENOMICS

IF4

2021-11-30

OAAI

Callanan, Julie; Stockdale, Stephen R.; Adriaenssens, Evelien M.; Kuhn, Jens H.; Rumnieks, Janis; Pallen, Mark J.; Shkoporov, Andrey N.; Draper, Lorraine A.; Ross, R. Paul; Hill, Colin

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Whole-Genome Sequencing of Brachyspira hyodysenteriae Isolates From England and Wales Reveals Similarities to European Isolates and Mutations Associated With Reduced Sensitivity to Antimicrobials

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-08-31

OAAI

Stubberfield, Emma; Sheldon, Jonathan; Card, Roderick M.; AbuOun, Manal; Rogers, Jon; Williamson, Susanna; Kay, Gemma L.; Pallen, Mark J.; Anjum, Muna F.

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Opinion The Next Million Names for Archaea and Bacteria

TRENDS IN MICROBIOLOGY

IF14.9

2021-04-01

OAAI

Pallen, Mark J.; Telatin, Andrea; Oren, Aharon

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Assembly of hundreds of novel bacterial genomes from the chicken caecum (vol 21, 34, 2020)

GENOME BIOLOGY

IF9.4

2021-02-12

OAAI

Glendinning, Laura; Stewart, Robert D.; Pallen, Mark J.; Watson, Kellie A.; Watson, Mick

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Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia

MICROBIAL GENOMICS

IF4

2021-01-01

OAAI

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M.; Jarju, Sheikh; Kwambana-Adams, Brenda A.; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John

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Restoration of wild-type motility to flagellin-knockout Escherichia coli by varying promoter, copy number and induction strength in plasmid-based expression of flagellin

CURRENT RESEARCH IN BIOTECHNOLOGY

IF4

2020-11-01

OAAI

Thomson, Nicholas M.; Pallen, Mark J.

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Creation of Golden Gate constructs for gene doctoring

BMC BIOTECHNOLOGY

IF3.4

2020-10-07

OAAI

Thomson, Nicholas M.; Zhang, Chuanzhen; Trampari, Eleftheria; Pallen, Mark J.

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Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia

MICROBIAL GENOMICS

IF4

2020-09-01

OAAI

Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaetan; Thomson, Nicholas M.; Baker, David; Kay, Gemma; Cramer, Jennifer D.; O'Grady, Justin; Antonio, Martin; Pallen, Mark J.

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Assembly of hundreds of novel bacterial genomes from the chicken caecum

GENOME BIOLOGY

IF9.4

2020-02-12

OAAI

Glendinning, Laura; Stewart, Robert D.; Pallen, Mark J.; Watson, Kellie A.; Watson, Mick

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Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali

SCIENTIFIC REPORTS

IF3.9

2020-01-15

OAAI

Senghore, Madikay; Diarra, Bassirou; Gehre, Florian; Otu, Jacob; Worwui, Archibald; Muhammad, Abdul Khalie; Kwambana-Adams, Brenda; Kay, Gemma L.; Sanogo, Moumine; Baya, Bocar; Orsega, Susan; Doumbia, Seydou; Diallo, Souleymane; de Jong, Bouke C.; Pallen, Mark J.; Antonio, Martin

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Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patients

MICROBIAL GENOMICS

IF4

2019-09-01

OAAI

Ravi, Anuradha; Halstead, Fenella D.; Bamford, Amy; Casey, Anna; Thomson, Nicholas M.; van Schaik, Willem; Snelson, Catherine; Goulden, Robert; Foster-Nyarko, Ebenezer; Savva, George M.; Whitehouse, Tony; Pallen, Mark J.; Oppenheim, Beryl A.

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Metagenomic profiling of ticks: Identification of novel rickettsial genomes and detection of tick-borne canine parvovirus

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2019-01-14

OAAI

Ravi, Anuradha; Ereqat, Suheir; Al-Jawabreh, Amer; Abdeen, Ziad; Abu Shamma, Omar; Hall, Holly; Pallen, Mark J.; Nasereddin, Abedelmajeed

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Bacterial Flagellins: Does Size Matter?

TRENDS IN MICROBIOLOGY

IF14.9

2018-07-01

PREAI

Thomson, Nicholas M.; Rossmann, Florian M.; Ferreira, Josie L.; Matthews-Palmer, Teige R.; Beeby, Morgan; Pallen, Mark J.

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An In Vitro Chicken Gut Model Demonstrates Transfer of a Multidrug Resistance Plasmid from Salmonella to Commensal Escherichia coli

MBIO

IF4.7

2017-09-06

OAAI

Card, Roderick M.; Cawthraw, Shaun A.; Nunez-Garcia, Javier; Ellis, Richard J.; Kay, Gemma; Pallen, Mark J.; Woodward, Martin J.; Anjum, Muna F.

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Identification of the anti-mycobacterial functional properties of piperidinol derivatives

BRITISH JOURNAL OF PHARMACOLOGY

IF7.7

2017-03-23

OAAI

Guy, Collette S.; Tichauer, Esther; Kay, Gemma L.; Phillips, Daniel J.; Bailey, Trisha L.; Harrison, James; Furze, Christopher M.; Millard, Andrew D.; Gibson, Matthew I.; Pallen, Mark J.; Fullam, Elizabeth

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The Enigmatic Esx Proteins: Looking Beyond Mycobacteria

TRENDS IN MICROBIOLOGY

IF14.9

2017-03-01

OAAI

Unnikrishnan, Meera; Constantinidou, Chrystala; Palmer, Tracy; Pallen, Mark J.

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Research Directions