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Nitin S. Baliga

Institute for Systems Biology

58H-index
249Paper Count
6.5WCitation Count
Published Papers 105
Publication Date
Host oxidative stress primes mycobacteria for rapid antibiotic resistance evolution
err2026-05-07
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errEvan Pepper-Tunick; Vivek Srinivas; Fred D. Mast; Song Li; Sagan Russ; Weston Hanson; Amy D. Zamora; Wei-Ju Wu; Matthew Silcocks; Dang Thi Minh Ha; Sarah J. Dunstan; Thuong Nguyen Thuy Thuong; Serdar Turkarslan; John D. Aitchison; Mario L. Arrieta-Ortiz; Nitin S. Baliga
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Symbiodiniaceae shifts over the last decade on the hottest coral reefs on Earth
err2025-10-15
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errAnna Fiesinger; Rachel Alderdice; Luigi Colin; Hannah Manns; Gabriela Perna; Kathryn H. Stankiewicz; Jacob J. Valenzuela; Line K. Bay; Daniel J. Barshis; Nitin S. Baliga; Iliana B. Baums; John A. Burt; Christian R. Voolstra
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Individualized dynamic risk assessment and treatment selection for multiple myeloma: Genetics and Genomics
err2025-04-01
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PREAI
errMurie, Carl; Turkarslan, Serdar; Patel, Anoop P.; Coffey, David G.; Becker, Pamela S.; Baliga, Nitin S.
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Emergence and disruption of cooperativity in a denitrifying microbial community
err2025-01-01
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errCarr, Alex, V; Otwell, Anne E.; Hunt, Kristopher A.; Chen, Yan; Wilson, James; Faria, Jose P.; Liu, Filipe; Edirisinghe, Janaka N.; Valenzuela, Jacob J.; Turkarslan, Serdar; Lui, Lauren M.; Nielsen, Torben N.; Arkin, Adam P.; Henry, Christopher S.; Petzold, Christopher J.; Stahl, David A.; Baliga, Nitin S.
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Origin of biogeographically distinct ecotypes during laboratory evolution
err2024-08-28
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errValenzuela, Jacob J.; Immanuel, Selva Rupa Christinal; Wilson, James; Turkarslan, Serdar; Ruiz, Maryann; Gibbons, Sean M.; Hunt, Kristopher A.; Stopnisek, Nejc; Auer, Manfred; Zemla, Marcin; Stahl, David A.; Baliga, Nitin S.
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Gene regulatory network topology governs resistance and treatment escape in glioma stem-like cells
err2024-06-07
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errPark, James H.; Hothi, Parvinder; de Lomana, Adrian Lopez Garcia; Pan, Min; Calder, Rachel; Turkarslan, Serdar; Wu, Wei-Ju; Lee, Hwahyung; Patel, Anoop P.; Cobbs, Charles; Huang, Sui; Baliga, Nitin S.
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Comparison of the transcriptome, lipidome, and c-di-GMP production between BCGΔBCG1419c and BCG, with Mincle- and Myd88-dependent induction of proinflammatory cytokines in murine macrophages
err2024-05-24
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errFlores-Valdez, Mario Alberto; Peterson, Eliza J. R.; Aceves-Sanchez, Michel de Jesus; Baliga, Nitin S.; Morita, Yasu S.; Sparks, Ian L.; Saini, Deepak Kumar; Yadav, Rahul; Lang, Roland; Mata-Espinosa, Dulce; Leon-Contreras, Juan Carlos; Hernandez-Pando, Rogelio
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3D Hydrogel Culture System Recapitulates Key Tuberculosis Phenotypes and Demonstrates Pyrazinamide Efficacy
err2024-05-01
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PREAI
errGupta, Vishal K.; Vaishnavi, Vijaya V.; Arrieta-Ortiz, Mario L.; Abhirami, P. S.; Jyothsna, K. M.; Jeyasankar, Sharumathi; Raghunathan, Varun; Baliga, Nitin S.; Agarwal, Rachit
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Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide
err2024-04-12
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PREAI
errHunt, Kristopher A.; Carr, Alex V.; Otwell, Anne E.; Valenzuela, Jacob J.; Walker, Kathleen S.; Dixon, Emma R.; Lui, Lauren M.; Nielsen, Torben N.; Bowman, Samuel; von Netzer, Frederick; Moon, Ji-Won; Schadt, Christopher W.; Rodriguez Jr, Miguel; Lowe, Kenneth; Joyner, Dominique; Davis, Katherine J.; Wu, Xiaoqin; Chakraborty, Romy; Fields, Matthew W.; Zhou, Jizhong; Hazen, Terry C.; Arkin, Adam P.; Wankel, Scott D.; Baliga, Nitin S.; Stahl, David A.
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Consequential insights for advancing informal STEM learning and outcomes for students from historically marginalized communities
err2024-03-02
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errLudwig, Claudia McLaughlin; Howsmon, Rebecca A.; Stromholt, Shelley; Valenzuela, Jacob J.; Calder, Rachel; Baliga, Nitin S.
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Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes
err2023-09-14
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errLim, Joe J.; Diener, Christian; Wilson, James; Valenzuela, Jacob J.; Baliga, Nitin S.; Gibbons, Sean M.
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MtrA modulates Mycobacterium tuberculosis cell division in host microenvironments to mediate intrinsic resistance and drug tolerance
err2023-08-01
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errPeterson, Eliza J. R.; Brooks, Aaron N.; Reiss, David J.; Kaur, Amardeep; Do, Julie; Pan, Min; Wu, Wei-Ju; Morrison, Robert; Srinivas, Vivek; Carter, Warren; Arrieta-Ortiz, Mario L.; Ruiz, Rene A.; Bhatt, Apoorva; Baliga, Nitin S.
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A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon
err2023-04-27
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errLorenzetti, Alan P. R.; Kusebauch, Ulrike; Zaramela, Livia S.; Wu, Wei-Ju; de Almeida, Joao P. P.; Turkarslan, Serdar; L. G. de Lomana, Adrian; Gomes-Filho, Jose V.; Vencio, Ricardo Z. N.; Moritz, Robert L.; Koide, Tie; Baliga, Nitin S.
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Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli
err2023-02-23
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errArrieta-Ortiz, Mario L.; Pan, Min; Kaur, Amardeep; Pepper-Tunick, Evan; Srinivas, Vivek; Dash, Ananya; Immanuel, Selva Rupa Christinal; Brooks, Aaron N.; Shepherd, Tyson R.; Baliga, Nitin S.
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A single-cell based precision medicine approach using glioblastoma patient-specific models
err2022-08-08
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errPark, James H.; Feroze, Abdullah H.; Emerson, Samuel N.; Mihalas, Anca B.; Keene, C. Dirk; Cimino, Patrick J.; de Lomana, Adrian Lopez Garcia; Kannan, Kavya; Wu, Wei-Ju; Turkarslan, Serdar; Baliga, Nitin S.; Patel, Anoop P.
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MadR mediates acyl CoA-dependent regulation of mycolic acid desaturation in mycobacteria
err2022-02-14
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errCooper, Charlotte; Peterson, Eliza J. R.; Bailo, Rebeca; Pan, Min; Singh, Albel; Moynihan, Patrick; Nakaya, Makoto; Fujiwara, Nagatoshi; Baliga, Nitin; Bhatt, Apoorva
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Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME
err2021-12-06
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errImmanuel, Selva Rupa Christinal; Arrieta-Ortiz, Mario L.; Ruiz, Rene A.; Pan, Min; de Lomana, Adrian Lopez Garcia; Peterson, Eliza J. R.; Baliga, Nitin S.
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Transcriptome signature of cell viability predicts drug response and drug interaction in Mycobacterium tuberculosis
err2021-12-01
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errSrinivas, Vivek; Ruiz, Rene A.; Pan, Min; Immanuel, Selva Rupa Christinal; Peterson, Eliza J. R.; Baliga, Nitin S.
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Autophagy as a Mechanism for Adaptive Prediction-Mediated Emergence of Drug Resistance
err2021-09-10
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errNivedita, Nivedita; Aitchison, John D.; Baliga, Nitin S.
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