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J

Joshua C. Denny

national institutes of health

106H-index
708Paper Count
5.1WCitation Count
Published Papers 198
Publication Date
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Multi-ancestry genome-wide association analyses provide insights into the genetic basis of Hashimoto’s thyroiditis
errNature Genetics
IF29
err2026-07-29
err0
errOAAI
errMelissa N. Bujnis; Rosalie B. T. M. Sterenborg; Yong Li; Bjørn Olav Åsvold; Luka Brčić; Vesna Boraska Perica; Anav Babbar; Joshua C. Denny; Lars G. Fritsche; Masahiro Kanai; Ilze Konrade; Graham Leese; Eirini Marouli; Andres Metspalu; Marta R. Moksnes; Bhramar Mukherjee; Yukinori Okada; Colin N. A. Palmer; Areti Papadopoulou; Raitis Peculis; Vita Rovite; Peter J. Sauer; Enrique Soto-Pedre; Sundararajan Srinivasan; Inga Steinbrenner; Maris Teder-Laving; Bin Wang; Antoine Weihs; Chenjie Zeng; Jin Zhou; XiCheng Song; Lynn B. Jorde; Marco Medici; Alexander Teumer
errShare
errSave
Multi-scale data improves performance of machine learning model for long COVID identification
errCommunications Medicine
IF6.3
err2026-05-05
err0
errOAAI
errChristopher Guardo; Zhang Xinmeng; Srushti Gangireddy; Yan Chao; V. Eric Kerchberger; Alyson L. Dickson; Emily R. Pfaff; Hiral Master; Xin Yi; Melissa Basford; Christopher G. Chute; Nguyen K. Tran; Salvatore Mancuso; Toufeeq Ahmed Syed; Zhao Zhongming; Feng QiPing; Melissa Haendel; Christopher Lunt; Paul A. Harris; Li Lang; Geoffrey S. Ginsburg; Joshua C. Denny; Dan M. Roden; Wei Wei-Qi
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errSave
A one-shot, lossless algorithm for cross-cohort learning in mixed-outcomes analysis
errPatterns
IF7.4
err2025-07-30
err0
errOAAI
errRuowang Li; Luke Benz; Rui Duan; Joshua C. Denny; Hakon Hakonarson; Jonathan D. Mosley; Jordan W. Smoller; Wei-Qi Wei; Thomas Lumley; Marylyn D. Ritchie; Jason H. Moore; Yong Chen
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errSave
Hormone Therapy Usage Is Associated With Adverse Cardiovascular Events in Prostate Cancer Patients of the All of Us Research Program Cohort
errprostate
IF0
err2025-06-11
err0
errOAAI
errYuanchu J. Yang; Chenjie Zeng; Kerry R. Schaffer; Tam C. Tran; Peter J. Sauer; Lincoln A. Brown; Ben H. Park; Joshua C. Denny
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errSave
Phenome-wide association of APOE alleles in the All of Us Research Program
erreBioMedicine
IF10.8
err2025-05-31
err0
errOAAI
errEhsan Khajouei; Valentina Ghisays; Ignazio S. Piras; Kiana L. Martinez; Anthony T. Vicenti; Marcus Naymik; Preston Ngo; Tam C. Tran; Joshua C. Denny; Travis J. Wheeler; Matthew J. Huentelman; Eric M. Reiman; Jason H. Karnes
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errSave
Genome-wide meta-analysis identifies novel risk loci for uterine fibroids within and across multiple ancestry groups
errNATURE COMMUNICATIONS
IF15.7
err2025-03-06
err0
errOAAI
errKim, Jeewoo; Williams, Ariel; Noh, Hannah; Jasper, Elizabeth A.; Jones, Sarah H.; Jaworski, James A.; Shuey, Megan M.; Ruiz-Narvaez, Edward A.; Wise, Lauren A.; Palmer, Julie R.; Connolly, John; Keaton, Jacob M.; Denny, Joshua C.; Khan, Atlas; Abbass, Mohammad A.; Rasmussen-Torvik, Laura J.; Kottyan, Leah C.; Madhivanan, Purnima; Krupp, Karl; Wei, Wei-Qi; Edwards, Todd L.; Hellwege, Jacklyn N.
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errSave
Hyponatremia Associated with the Use of Common Antidepressants in the All of Us Research Program
errCLINICAL PHARMACOLOGY & THERAPEUTICS
IF5.5
err2024-11-14
err0
PREAI
errMo, Huan; Channa, Yamna; Ferrara, Tracey M.; Waxse, Bennett J.; Schlueter, David J.; Tran, Tam C.; Awan, Anas H.; Goleva, Slavina B.; Williams, Ariel; Babbar, Anav; Stubblefield, Onajia; Keaton, Jacob M.; Larson, Eric A.; Wilke, Russell A.; Denny, Joshua C.
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errSave
Racial and Ethnic Disparities in Antihypertensive Medication Prescribing Patterns and Effectiveness
errCLINICAL PHARMACOLOGY & THERAPEUTICS
IF5.5
err2024-07-25
err0
errOAAI
errGoleva, Slavina B.; Williams, Ariel; Schlueter, David J.; Keaton, Jacob M.; Tran, Tam C.; Waxse, Bennett J.; Ferrara, Tracey M.; Cassini, Thomas; Mo, Huan; Denny, Joshua C.
errShare
errSave
Genome-wide analysis in over 1 million individuals of European ancestry yields improved polygenic risk scores for blood pressure traits
errNATURE GENETICS
IF31.8
err2024-04-30
err11
errOAAI
errKeaton, Jacob M.; Kamali, Zoha; Xie, Tian; Vaez, Ahmad; Williams, Ariel; Goleva, Slavina B.; Ani, Alireza; Evangelou, Evangelos; Hellwege, Jacklyn N.; Yengo, Loic; Young, William J.; Traylor, Matthew; Giri, Ayush; Zheng, Zhili; Zeng, Jian; Chasman, Daniel I.; Morris, Andrew P.; Caulfield, Mark J.; Hwang, Shih-Jen; Kooner, Jaspal S.; Conen, David; Attia, John R.; Morrison, Alanna C.; Loos, Ruth J. F.; Kristiansson, Kati; Schmidt, Reinhold; Hicks, Andrew A.; Pramstaller, Peter P.; Nelson, Christopher P.; Samani, Nilesh J.; Risch, Lorenz; Gyllensten, Ulf; Melander, Olle; Riese, Harriette; Wilson, James F.; Campbell, Harry; Rich, Stephen S.; Psaty, Bruce M.; Lu, Yingchang; Rotter, Jerome I.; Guo, Xiuqing; Rice, Kenneth M.; Vollenweider, Peter; Sundstrom, Johan; Langenberg, Claudia; Tobin, Martin D.; Giedraitis, Vilmantas; Luan, Jian'an; Tuomilehto, Jaakko; Kutalik, Zoltan; Ripatti, Samuli; Salomaa, Veikko; Girotto, Giorgia; Trompet, Stella; Jukema, J. Wouter; van der Harst, Pim; Ridker, Paul M.; Giulianini, Franco; Vitart, Veronique; Goel, Anuj; Watkins, Hugh; Harris, Sarah E.; Deary, Ian J.; van der Most, Peter J.; Oldehinkel, Albertine J.; Keavney, Bernard D.; Hayward, Caroline; Campbell, Archie; Boehnke, Michael; Scott, Laura J.; Boutin, Thibaud; Mamasoula, Chrysovalanto; Jarvelin, Marjo-Riitta; Peters, Annette; Gieger, Christian; Lakatta, Edward G.; Cucca, Francesco; Hui, Jennie; Knekt, Paul; Enroth, Stefan; De Borst, Martin H.; Polasek, Ozren; Concas, Maria Pina; Catamo, Eulalia; Cocca, Massimiliano; Li-Gao, Ruifang; Hofer, Edith; Schmidt, Helena; Spedicati, Beatrice; Waldenberger, Melanie; Strachan, David P.; Laan, Maris; Teumer, Alexander; Dorr, Marcus; Gudnason, Vilmundur; Cook, James P.; Ruggiero, Daniela; Kolcic, Ivana; Boerwinkle, Eric; Traglia, Michela; Lehtimaki, Terho; Raitakari, Olli T.; Johnson, Andrew D.; Newton-Cheh, Christopher; Brown, Morris J.; Dominiczak, Anna F.; Sever, Peter J.; Poulter, Neil; Chambers, John C.; Elosua, Roberto; Siscovick, David; Esko, Tonu; Metspalu, Andres; Strawbridge, Rona J.; Laakso, Markku; Hamsten, Anders; Hottenga, Jouke-Jan; de Geus, Eco; Morris, Andrew D.; Palmer, Colin N. A.; Nolte, Ilja M.; Milaneschi, Yuri; Marten, Jonathan; Wright, Alan; Zeggini, Eleftheria; Howson, Joanna M. M.; O'Donnell, Christopher J.; Spector, Tim; Nalls, Mike A.; Simonsick, Eleanor M.; Liu, Yongmei; van Duijn, Cornelia M.; Butterworth, Adam S.; Danesh, John N.; Menni, Cristina; Wareham, Nicholas J.; Khaw, Kay-Tee; Sun, Yan V.; Wilson, Peter W. F.; Cho, Kelly; Visscher, Peter M.; Denny, Joshua C.; Levy, Daniel; Edwards, Todd L.; Munroe, Patricia B.; Snieder, Harold; Warren, Helen R.
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errSave
The All of Us Research Program is an opportunity to enhance the diversity of US biomedical research
errNATURE MEDICINE
IF50
err2024-02-19
err11
PREAI
errBianchi, Diana W.; Brennan, Patricia Flatley; Chiang, Michael F.; Criswell, Lindsey A.; D'Souza, Rena N.; Gibbons, Gary H.; Gilman, James K.; Gordon, Joshua A.; Green, Eric D.; Gregurick, Susan; Hodes, Richard J.; Kilmarx, Peter H.; Koob, George F.; Koroshetz, Walter J.; Langevin, Helene M.; Lorsch, Jon R.; Marrazzo, Jeanne M.; Perez-Stable, Eliseo J.; Rathmell, W. Kimryn; Rodgers, Griffin P.; Rutter, Joni L.; Simoni, Jane M.; Tromberg, Bruce J.; Tucci, Debara L.; Volkow, Nora D.; Woychik, Rick; Zenk, Shannon N.; Kozlowski, Elyse; Peterson, Rachele S.; Ginsburg, Geoffrey S.; Denny, Joshua C.
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errSave
Data-driven science and diversity in the All of Us Research Program
errSCIENCE TRANSLATIONAL MEDICINE
IF14.6
err2023-12-13
err4
PREAI
errGinsburg, Geoffrey S.; Denny, Joshua C.; Schully, Sheri D.
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errSave
A test of automated use of electronic health records to aid in diagnosis of genetic disease
errGENETICS IN MEDICINE
IF6.2
err2023-12-01
err2
errOAAI
errCassini, Thomas; Bastarache, Lisa; Zeng, Chenjie; Han, Sangwoo T.; Wang, Janey; He, Jing; Denny, Joshua C.
errShare
errSave
Genetic variation in the human leukocyte antigen region confers susceptibility to Clostridioides difficile infection (vol 13, 18532, 2023)
errSCIENTIFIC REPORTS
IF3.9
err2023-11-15
err0
errOAAI
errFerar, Kathleen; Hall, Taryn O.; Crawford, Dana C.; Rowley, Robb; Satterfield, Benjamin A.; Li, Rongling; Gragert, Loren; Karlson, Elizabeth W.; de Andrade, Mariza; Kullo, Iftikhar J.; McCarty, Catherine A.; Kho, Abel; Hayes, M. Geoffrey; Ritchie, Marylyn D.; Crane, Paul K.; Mirel, Daniel B.; Carlson, Christopher; Connolly, John J.; Hakonarson, Hakon; Crenshaw, Andrew T.; Carrell, David; Luo, Yuan; Dikilitas, Ozan; Denny, Joshua C.; Jarvik, Gail P.; Crosslin, David R.
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errSave
Genetic variation in the human leukocyte antigen region confers susceptibility to Clostridioides difficile infection
errSCIENTIFIC REPORTS
IF3.9
err2023-10-28
err0
errOAAI
errFerar, Kathleen; Hall, Taryn O.; Crawford, Dana C.; Rowley, Robb; Satterfield, Benjamin A.; Li, Rongling; Gragert, Loren; Karlson, Elizabeth W.; de Andrade, Mariza; Kullo, Iftikhar J.; Mccarty, Catherine A.; Kho, Abel; Hayes, M. Geoffrey; Ritchie, Marylyn D.; Crane, Paul K.; Mirel, Daniel B.; Carlson, Christopher; Connolly, John J.; Hakonarson, Hakon; Crenshaw, Andrew T.; Carrell, David; Luo, Yuan; Dikilitas, Ozan; Denny, Joshua C.; Jarvik, Gail P.; Crosslin, David R.
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errSave
Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis
errNATURE COMMUNICATIONS
IF15.7
err2023-09-05
err6
errOAAI
errDeflaux, Nicole; Selvaraj, Margaret Sunitha; Condon, Henry Robert; Mayo, Kelsey; Haidermota, Sara; Basford, Melissa A.; Lunt, Chris; Philippakis, Anthony A.; Roden, Dan M.; Denny, Joshua C.; Musick, Anjene; Collins, Rory; Allen, Naomi; Effingham, Mark; Glazer, David; Natarajan, Pradeep; Bick, Alexander G.
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errSave
The phenotype-genotype reference map: Improving biobank data science through replication
errAMERICAN JOURNAL OF HUMAN GENETICS
IF8.1
err2023-09-01
err5
errOAAI
errBastarache, Lisa; Delozier, Sarah; Pandit, Anita; He, Jing; Lewis, Adam; Annis, Aubrey C.; Lefaive, Jonathon; Denny, Joshua C.; Carroll, Robert J.; Altman, Russ B.; Hughey, Jacob J.; Zawistowski, Matthew; Peterson, Josh F.
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errSave
The All of Us Data and Research Center: Creating a Secure, Scalable, and Sustainable Ecosystem for Biomedical Research
errANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE
IF6
err2023-08-10
err24
errOAAI
errMayo, Kelsey R.; Basford, Melissa A.; Carroll, Robert J.; Dillon, Moira; Fullen, Heather; Leung, Jesse; Master, Hiral; Rura, Shimon; Sulieman, Lina; Kennedy, Nan; Banks, Eric; Bernick, David; Gauchan, Asmita; Lichtenstein, Lee; Mapes, Brandy M.; Marginean, Kayla; Nyemba, Steve L.; Ramirez, Andrea; Rotundo, Charissa; Wolfe, Keri; Xia, Weiyi; Azuine, Romuladus E.; Cronin, Robert M.; Denny, Joshua C.; Kho, Abel; Lunt, Christopher; Malin, Bradley; Natarajan, Karthik; Wilkins, Consuelo H.; Xu, Hua; Hripcsak, George; Roden, Dan M.; Philippakis, Anthony A.; Glazer, David; Harris, Paul A.
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Phenotype Risk Score but Not Genetic Risk Score Aids in Identifying Individuals With Systemic Lupus Erythematosus in the Electronic Health Record
errARTHRITIS & RHEUMATOLOGY
IF10.9
err2023-07-12
err1
errOAAI
errBarnado, April; Wheless, Lee; Camai, Alex; Green, Sarah; Han, Bryan; Katta, Anish; Denny, Joshua C.; Sawalha, Amr H.
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errSave
Genetic and clinical determinants of telomere length
errHUMAN GENETICS AND GENOMICS ADVANCES
IF3.6
err2023-07-01
err15
errOAAI
errAllaire, Patrick; He, Jing; Mayer, John; Moat, Luke; Gerstenberger, Peter; Wilhorn, Reynor; Strutz, Sierra; Kim, David S. L.; Zeng, Chenjie; Cox, Nancy; Shay, Jerry W.; Denny, Joshua; Bastarache, Lisa; Hebbring, Scott
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errSave
Drug-Induced Liver Injury with Commonly Used Antibiotics in the All of Us Research Program
errCLINICAL PHARMACOLOGY & THERAPEUTICS
IF5.5
err2023-05-24
err5
errOAAI
errGu, Shaopeng; Rajendiran, Govarthanan; Forest, Kennedy; Tran, Tam C. C.; Denny, Joshua C. C.; Larson, Eric A. A.; Wilke, Russell A. A.
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Research Directions

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Co-authors
Cooperation Journals
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Luigi Ferrucci
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André G. Uitterlinden
H-index: 234 · Papers: 2.0K
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Daniel Levy
H-index: 230 · Papers: 1.6K
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Mark I. McCarthy
H-index: 222 · Papers: 1.5K
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Mika Kivimäki
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