Shilin Zhao - Publications, H-index & Citations

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Shilin Zhao

Vanderbilt University

34H-index

371Paper Count

7.0KCitation Count

Published Papers 96

Publication Date

Evaluating cell AI foundation models in kidney pathology with human-in-the-loop enrichment

Communications Medicine

IF6.3

2025-11-24

OAAI

Junlin Guo; Siqi Lu; Can Cui; Ruining Deng; Tianyuan Yao; Zhewen Tao; Yizhe Lin; Marilyn Lionts; Quan Liu; Juming Xiong; Yu Wang; Shilin Zhao; Catie Chang; Mitchell Wilkes; Agnes Fogo; Mengmeng Yin; Haichun Yang; Yuankai Huo

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Glo-In-One-v2: holistic identification of glomerular cells, tissues, and lesions in human and mouse histopathology

JOURNAL OF MEDICAL IMAGING

IF1.7

2025-11-01

OAAI

Yu, Lining; Yin, Mengmeng; Deng, Ruining; Liu, Quan; Yao, Tianyuan; Cui, Can; Guo, Junlin; Wang, Yu; Wang, Yaohong; Zhao, Shilin; Yang, Haichun; Huo, Yuankai

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Img2ST-Net: efficient high-resolution spatial omics prediction from whole-slide histology images via fully convolutional image-to-image learning

JOURNAL OF MEDICAL IMAGING

IF1.7

2025-11-01

PREAI

Zhu, Junchao; Deng, Ruining; Guo, Junlin; Yao, Tianyuan; Xiong, Juming; Qu, Chongyu; Yin, Mengmeng; Wang, Yu; Zhao, Shilin; Yang, Haichun; Xu, Daguang; Tang, Yucheng; Huo, Yuankai

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A phase space and network-based approach for diagnosing compensation capacitor faults in Jointless Track Circuits

Measurement

IF5.6

2025-10-10

PREAI

Guangwu Chen; Shilin Wang; Peng Li; Xin Zhou; Shilin Zhao; Jianqiang Shi; Chengqi Bao

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Aconitate Decarboxylase 1 Downregulates Colitis and Maintains Homeostasis of the Gut Metabolome and Microbiome

GASTRO HEP ADVANCES

IF0

2025-09-01

OAAI

McNamara, Kara M.; Latour, Yvonne L.; Hawkins, Caroline V.; Williams, Kamery J.; Barry, Daniel P.; Allaman, Margaret M.; Delgado, Alberto G.; Chetyrkin, Sergei V.; Calcutt, M. Wade; Piazuelo, M. Blanca; Washington, M. Kay; Zhao, Shilin; Coburn, Lori A.; Gobert, Alain P.; Wilson, Keith T.

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An inverse model for primary design parameter interaction of 1.5 stage counter-rotating turbine

PROCEEDINGS OF THE INSTITUTION OF MECHANICAL ENGINEERS PART C-JOURNAL OF MECHANICAL ENGINEERING SCIENCE

IF1.7

2025-09-01

PREAI

Zhao, Ben; Zhao, Shilin; Liu, Shuo; Huang, Chen

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stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-09-01

OAAI

Wang, Yu; Yang, Haichun; Deng, Ruining; Huo, Yuankai; Liu, Qi; Shyr, Yu; Zhao, Shilin

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Genetic analysis in African ancestry populations reveals genetic contributors to lung cancer susceptibility

american journal of human genetics

IF0

2025-08-18

PREAI

Michael J. Betti; James Jaworski; Shilin Zhao; J. Sunil Rao; Bríd M. Ryan; Ann G. Schwartz; Christine M. Lusk; Lucie McCoy; John K. Wiencke; Marino A. Bruce; Stephen Chanock; Eric R. Gamazon; Jacklyn N. Hellwege; Melinda C. Aldrich

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Beta 2 adrenergic receptor gene methylation activates innate lymphoid cells to drive hypertension in lymphocyte deficient hosts

CARDIOVASCULAR RESEARCH

IF13.3

2025-04-10

PREAI

Chen, Wei; Perrotta, Sara; Xiao, Liang; Carnevale, Lorenzo; Abd-ElDayem, Marwa A.; Hennen, Elizabeth M.; Rivera-Medina, Luis Miguel; Patrick, David M.; Ao, Mingfang; Pallante, Fabio; Zonfrilli, Azzurra; Zhao, Shilin; Migliaccio, Agnese; Lan, Lan; Fardella, Stefania; Sciume, Giuseppe; Mastroiacovo, Francesco; Lembo, Giuseppe; Carnevale, Daniela; Harrison, David G.

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The improved mountain gazelle optimizer for spatiotemporal support vector regression: a novel method for railway subgrade settlement prediction integrating multi-source information

APPLIED INTELLIGENCE

IF3.5

2025-04-01

PREAI

Chen, Guangwu; Zhao, Shilin; Li, Peng; Wang, Shilin; Zhou, Xin; Potekhin, Vyacheslav

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AI-Driven Pathomics and Spatial Transcriptomics Uncover Morphology and Gene Changes in Aging Kidney Arteries

LABORATORY INVESTIGATION

IF4.2

2025-03-01

PREAI

Yin, Mengmeng; Yang, Yuechen; Wang, Yu; Zhong, Jianyong; Wang, Yihan; Zhao, Shilin; Fogo, Agnes; Huo, Yuankai; Yang, Haichun

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Fault localization using sliding adaptive data segmentation and improved k-nearest neighbour with application to railway track circuits

COMPUTERS & ELECTRICAL ENGINEERING

IF4.9

2025-03-01

PREAI

Zhao, Shilin; Chen, Guangwu; Li, Peng; Shi, Jianqiang; Potekhin, Vyacheslav

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Hepatic Steatosis and Fibrosis, Cardiorespiratory Fitness, and Metabolic Mediators in the Community

LIVER INTERNATIONAL

IF5.2

2024-12-14

PREAI

Florea, Victor V.; Gajjar, Priya; Huang, Shi; Tang, Jingxian; Zhao, Shilin; Davenport, Megan; Mi, Michael Y.; Haff, Madeleine; Zhang, Xiaoyu; Miller, Patricia E.; Vasan, Ramachandran S.; Liu, Ching-Ti; Lewis, Gregory D.; Shah, Ravi V.; Long, Michelle T.; Nayor, Matthew

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Hypusination in intestinal epithelial cells protects mice from infectious colitis

GUT MICROBES

IF11

2024-12-14

OAAI

Gobert, Alain P.; Hawkins, Caroline V.; Williams, Kamery J.; Snyder, Lydia A.; Barry, Daniel P.; Asim, Mohammad; Allaman, Margaret M.; Mcnamara, Kara M.; Delgado, Alberto G.; Wang, Yu; Zhao, Shilin; Rose, Kristie L.; Piazuelo, M. Blanca; Wilson, Keith T.

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Transcriptomics profiling of the non-small cell lung cancer microenvironment across disease stages reveals dual immune cell-type behaviors

FRONTIERS IN IMMUNOLOGY

IF5.9

2024-10-31

OAAI

Hurtado, Marcelo; Khajavi, Leila; Essabbar, Abdelmounim; Kammer, Michael; Xie, Ting; Coullomb, Alexis; Pradines, Anne; Casanova, Anne; Kruczynski, Anna; Gouin, Sandrine; Clermont, Estelle; Boutillet, Lea; Senosain, Maria Fernanda; Zou, Yong; Zhao, Shillin; Burq, Prosper; Mahfoudi, Abderrahim; Besse, Jerome; Launay, Pierre; Passioukov, Alexandre; Chetaille, Eric; Favre, Gilles; Maldonado, Fabien; Cruzalegui, Francisco; Delfour, Olivier; Mazieres, Julien; Pancaldi, Vera

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The reverse transsulfuration pathway affects the colonic microbiota and contributes to colitis in mice

AMINO ACIDS

IF2.4

2024-10-19

OAAI

Gobert, Alain P.; Latour, Yvonne L.; McNamara, Kara M.; Hawkins, Caroline V.; Williams, Kamery J.; Asim, Mohammad; Barry, Daniel P.; Allaman, Margaret M.; Delgado, Alberto G.; Milne, Ginger L.; Zhao, Shilin; Piazuelo, M. Blanca; Washington, M. Kay; Coburn, Lori A.; Wilson, Keith T.

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Reply to: Toward Enhanced Methodological Rigor: Addressing Limitations in the Comparative Analysis of Probiotics and Antidepressants for Major Depressive Disorder Management

NUTRITION REVIEWS

IF4.9

2024-10-14

PREAI

Zhao, Shilin; Tao, Jun; Liang, Suisha; Tun, Hein M.

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Chronic hyperglycemia aggravates lung function in a Scnn1b-Tg murine model

AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

IF3.5

2024-10-01

PREAI

Cui, Guiying; Moustafa, Dina A.; Zhao, Shilin; Cegla, Analia Vazquez; Lyles, James T.; Goldberg, Joanna B.; Chandler, Joshua D.; McCarty, Nael A.

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Analysis of the effect of hypusination in myeloid cells on colitis and colitis-associated cancer

HELIYON

IF3.6

2024-07-01

OAAI

Gobert, Alain P.; Finley, Jordan; Asim, Mohammad; Barry, Daniel P.; Allaman, Margaret M.; Hawkins, Caroline, V; Williams, Kamery J.; Delagado, Alberto G.; Mirmira, Raghavendra G.; Zhao, Shilin; Piazuelo, M. Blanca; Washington, M. Kay; Coburn, Lori A.; Wilson, Keith T.

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Proteomics, Human Environmental Exposure, and Cardiometabolic Risk

CIRCULATION RESEARCH

IF16.2

2024-06-21

PREAI

Perry, Andrew S.; Zhang, Kai; Murthy, Venkatesh L.; Choi, Bina; Zhao, Shilin; Gajjar, Priya; Colangelo, Laura A.; Hou, Lifang; Rice, Mary B.; Carr, J. Jeffrey; Carson, April P.; Nigra, Anne E.; Vasan, Ramachandran S.; Gerszten, Robert E.; Khan, Sadiya S.; Kalhan, Ravi; Nayor, Matthew; Shah, Ravi V.

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Research Directions