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Tomiko Oskotsky

university of california san francisco

20H-index
105Paper Count
1.5KCitation Count
Published Papers 32
Publication Date
Plasma or Serum? A Pilot Evaluation of Matrix Selection for Integrated Metabolomics and Exposomics of Clinical Samples
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IF4.1
err2026-06-06
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errXiaowen Ji; Julian Edwards; Miaomiao Wang; Juan C. Irwin; Binya Liu; Amanda M. Gutierrez; Lin Li; Jeannette C. Lager; Camran R. Nezhat; David K. Stevenson; Tomiko T. Oskotsky; Marina Sirota; Dimitri Abrahamsson; Linda C. Giudice; Tracey J. Woodruff; Joshua F. Robinson; June-Soo Park
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Leveraging health records to identify diagnoses associated with recurrent pregnancy loss across two medical centers
err2026-01-07
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errJacquelyn Roger; Feng Xie; Jean M. Costello; Alice S. Tang; Jay Liu; Tomiko T. Oskotsky; Sarah R. Woldemariam; Idit Kosti; Brian L. Le; Michael P. Snyder; Linda C. Giudice; Gary M. Shaw; David K. Stevenson; Aleksandar Rajkovic; M. Maria Glymour; Dara Torgerson; Nima Aghaeepour; Hakan Cakmak; Ruth B. Lathi; Marina Sirota
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Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research
err2025-11-07
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errJonathan L. Golob; Tomiko T. Oskotsky; Alice S. Tang; Alennie Roldan; Verena Chung; Connie W.Y. Ha; Ronald J. Wong; Kaitlin J. Flynn; Rong Chai; Claire Dubin; Antonio Parraga-Leo; Camilla Wibrand; Samuel S. Minot; Boris Oskotsky; Gaia Andreoletti; Idit Kosti; Julie Bletz; Amber Nelson; Jifan Gao; Zhoujingpeng Wei; Guanhua Chen; Zheng-Zheng Tang; Pierfrancesco Novielli; Donato Romano; Ester Pantaleo; Nicola Amoroso; Alfonso Monaco; Mirco Vacca; Maria De Angelis; Roberto Bellotti; Sabina Tangaro; Zehua Wang; Jiaming Yao; Akhil Goel; Jiangyue Mao; Huiqian Wang; Yuci Zhang; Ambuj Tewari; Abigail Kuntzleman; Isaac Bigcraft; Stephen Techtmann; Daehun Bae; Eunyoung Kim; Jongbum Jeon; Soobok Joe; Kevin R. Theis; Sherrianne Ng; Yun S. Lee; Patricia Diaz-Gimeno; Phillip R. Bennett; David A. MacIntyre; Gustavo Stolovitzky; Susan V. Lynch; Jake Albrecht; Nardhy Gomez-Lopez; Roberto Romero; David K. Stevenson; Nima Aghaeepour; Adi L. Tarca; James C. Costello; Marina Sirota
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Delirium in hospitalized COVID-19 patients is associated with dynamic changes in peripheral immune gene expression
err2025-09-22
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errSara C. LaHue; Naoki Takegami; Rubinee Simmasalam; Abiya Baqai; Elena Munoz; Anya Sikri; Thibault du Buisson de Courson; Nilika S. Singhal; Walter Eckalbar; Charles R. Langelier; Carolyn M. Hendrickson; Carolyn S. Calfee; David J. Erle; Matthew F. Krummel; Prescott G. Woodruff; Tomiko Oskotsky; Marina Sirota; Adam Ferguson; Vanja C. Douglas; John C. Newman; Samuel J. Pleasure; Michael R. Wilson; Neel S. Singhal
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Leveraging electronic health records from two hospital systems identifies male infertility-associated comorbidities across time
err2025-09-01
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errSarah R. Woldemariam; Feng Xie; Alennie Roldan; Jacquelyn Roger; Alice S. Tang; Tomiko T. Oskotsky; David K. Stevenson; Ruth B. Lathi; Aleksandar Rajkovic; Isabel E. Allen; Nima Aghaeepour; Michael Eisenberg; Marina Sirota
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Anticlustering for sample allocation to minimize batch effects
err2025-08-18
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errMartin Papenberg; Cheng Wang; Maïgane Diop; Syed Hassan Bukhari; Boris Oskotsky; Brittany R. Davidson; Kim Chi Vo; Binya Liu; Juan C. Irwin; Alexis J. Combes; Brice Gaudilliere; Jingjing Li; David K. Stevenson; Gunnar W. Klau; Linda C. Giudice; Marina Sirota; Tomiko T. Oskotsky
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Comorbidity analysis and clustering of endometriosis patients using electronic health records
err2025-07-31
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errUmair Khan; Tomiko T. Oskotsky; Bahar D. Yilmaz; Jacquelyn Roger; Ketrin Gjoni; Juan C. Irwin; Jessica Opoku-Anane; Noémie Elhadad; Linda C. Giudice; Marina Sirota
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Comorbidities associated with a clinically-recognized delirium diagnosis in the hospital using real world data
err2025-07-22
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errLay Kodama; Sarah R. Woldemariam; Alice S. Tang; Yaqiao Li; John Kornak; Isabel Elaine Allen; Eva Raphael; Tomiko T. Oskotsky; Marina Sirota
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Cell-type-directed network-correcting combination therapy for Alzheimer’s disease
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IF42.5
err2025-07-21
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errYaqiao Li; Carlota Pereda Serras; Jessica Blumenfeld; Min Xie; Yanxia Hao; Elise Deng; You Young Chun; Julia Holtzman; Alice An; Seo Yeon Yoon; Xinyu Tang; Antara Rao; Sarah Woldemariam; Alice Tang; Alex Zhang; Jeffrey Simms; Iris Lo; Tomiko Oskotsky; Michael J. Keiser; Yadong Huang; Marina Sirota
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AI-guided precision parenteral nutrition for neonatal intensive care units (Mar, 10.1038/s41591-025-03601-1, 2025)
err2025-04-09
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errPhongpreecha, Thanaphong; Ghanem, Marc; Reiss, Jonathan D.; Oskotsky, Tomiko T.; Mataraso, Samson J.; De Francesco, Davide; Reincke, S. Momsen; Espinosa, Camilo; Chung, Philip; Ng, Taryn; Costello, Jean M.; Sequoia, Jennifer A.; Razdan, Sheila; Xie, Feng; Kim, Yeasul; Seong, David; Szeto, May Y.; Myers, Faith; Gu, Hannah; Feister, John; Verscaj, Courtney P.; Rose, Laura A.; Sin, Lucas W. Y.; Oskotsky, Boris; Roger, Jacquelyn; Shu, Chi-hung; Shome, Sayane; Yang, Liu K.; Tan, Yuqi; Levitte, Steven; Wong, Ronald J.; Gaudilliere, Brice; Angst, Martin S.; Montine, Thomas J.; Kerner, John A.; Keller, Roberta L.; Shaw, Gary M.; Sylvester, Karl G.; Fuerch, Janene; Chock, Valerie; Gaskari, Shabnam; Stevenson, David K.; Sirota, Marina; Prince, Lawrence S.; Aghaeepour, Nima
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Pre-conception clinical risk factors differ between spontaneous and indicated preterm birth in a densely phenotyped EHR cohort
err2025-02-12
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errCostello, Jean M.; Takasuka, Hannah; Roger, Jacquelyn; Yin, Ophelia; Tang, Alice; Oskotsky, Tomiko; Sirota, Marina; Capra, John A.
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Exposure to autoimmune disorders is associated with increased Alzheimer's disease risk in a multi-site electronic health record analysis
err2025-02-01
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errRamey, Grace D.; Tang, Alice; Phongpreecha, Thanaphong; Yang, Monica M.; Woldemariam, Sarah R.; Oskotsky, Tomiko T.; Montine, Thomas J.; Allen, Isabel; Miller, Zachary A.; Aghaeepour, Nima; Capra, John A.
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Harnessing EHR data for health research
err2024-07-04
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PREAI
errTang, Alice S.; Woldemariam, Sarah R.; Miramontes, Silvia; Norgeot, Beau; Oskotsky, Tomiko T.; Sirota, Marina
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Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights
err2024-02-21
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errTang, Alice S.; Rankin, Katherine P.; Cerono, Gabriel; Miramontes, Silvia; Mills, Hunter; Roger, Jacquelyn; Zeng, Billy; Nelson, Charlotte; Soman, Karthik; Woldemariam, Sarah; Li, Yaqiao; Lee, Albert; Bove, Riley; Glymour, Maria; Aghaeepour, Nima; Oskotsky, Tomiko T.; Miller, Zachary; Allen, Isabel E.; Sanders, Stephan J.; Baranzini, Sergio; Sirota, Marina
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Discovery of sparse, reliable omic biomarkers with Stabl
err2024-01-02
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errHedou, Julien; Maric, Ivana; Bellan, Gregoire; Einhaus, Jakob; Gaudilliere, Dyani K.; Ladant, Francois-Xavier; Verdonk, Franck; Stelzer, Ina A.; Feyaerts, Dorien; Tsai, Amy S.; Ganio, Edward A.; Sabayev, Maximilian; Gillard, Joshua; Amar, Jonas; Cambriel, Amelie; Oskotsky, Tomiko T.; Roldan, Alennie; Golob, Jonathan L.; Sirota, Marina; Bonham, Thomas A.; Sato, Masaki; Diop, Maigane; Durand, Xavier; Angst, Martin S.; Stevenson, David K.; Aghaeepour, Nima; Montanari, Andrea; Gaudilliere, Brice
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Microbiome preterm birth DREAM challenge Crowdsourcing machine learning approaches to advance preterm birth research
err2024-01-01
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errGolob, Jonathan L.; Oskotsky, Tomiko T.; Tang, Alice S.; Roldan, Alennie; Chung, Verena; Ha, Connie W. Y.; Wong, Ronald J.; Flynn, Kaitlin J.; Parraga-Leo, Antonio; Wibrand, Camilla; Minot, Samuel S.; Oskotsky, Boris; Andreoletti, Gaia; Kosti, Idit; Bletz, Julie; Nelson, Amber; Gao, Jifan; Wei, Zhoujingpeng; Chen, Guanhua; Tang, Zheng-Zheng; Novielli, Pierfrancesco; Romano, Donato; Pantaleo, Ester; Amoroso, Nicola; Monaco, Alfonso; Vacca, Mirco; De Angelis, Maria; Bellotti, Roberto; Tangaro, Sabina; Kuntzleman, Abigail; Bigcraft, Isaac; Techtmann, Stephen; Bae, Daehun; Kim, Eunyoung; Jeon, Jongbum; Joe, Soobok; Theis, Kevin R.; Ng, Sherriann; Lee, Yun S.; Diaz-Gimeno, Patricia; Bennett, Phillip R.; MacIntyre, David A.; Stolovitzky, Gustavo; Lynch, Susan V.; Albrecht, Jake; Gomez-Lopez, Nardhy; Romero, Roberto; Stevenson, David K.; Aghaeepour, Nima; Tarca, Adi L.; Costello, James C.; Sirota, Marina
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MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies
err2023-11-01
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errMinot, Samuel S.; Garb, Bailey; Roldan, Alennie; Tang, Alice S.; Oskotsky, Tomiko T.; Rosenthal, Christopher; Hoffman, Noah G.; Sirota, Marina; Golob, Jonathan L.
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Endometriosis in the era of precision medicine and impact on sexual and reproductive health across the lifespan and in diverse populations
err2023-08-29
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errGiudice, Linda C.; Oskotsky, Tomiko T.; Falako, Simileoluwa; Opoku-Anane, Jessica; Sirota, Marina
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Similarities and differences in Alzheimer's dementia comorbidities in racialized populations identified from electronic medical records
err2023-04-08
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errWoldemariam, Sarah R. R.; Tang, Alice S. S.; Oskotsky, Tomiko T. T.; Yaffe, Kristine; Sirota, Marina
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