Not logged in An open-source framework for end-to-end analysis of electronic health record data Heumos, Lukas; Ehmele, Philipp; Treis, Tim; zu Belzen, Julius Upmeier; Roellin, Eljas; May, Lilly; Namsaraeva, Altana; Horlava, Nastassya; Shitov, Vladimir A.; Zhang, Xinyue; Zappia, Luke; Knoll, Rainer; Lang, Niklas J.; Hetzel, Leon; Virshup, Isaac; Sikkema, Lisa; Curion, Fabiola; Eils, Roland; Schiller, Herbert B.; Hilgendorff, Anne; Theis, Fabian J. Share Save
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data Sarfraz, Irzam; Wang, Yichen; Shastry, Amulya; Teh, Wei Kheng; Sokolov, Artem; Herb, Brian R.; Creasy, Heather H.; Virshup, Isaac; Dries, Ruben; Degatano, Kylee; Mahurkar, Anup; Schnell, Daniel J.; Madrigal, Pedro; Hilton, Jason; Gehlenborg, Nils; Tickle, Timothy; Campbell, Joshua D. Share Save
SpatialData: an open and universal data framework for spatial omics Marconato, Luca; Palla, Giovanni; Yamauchi, Kevin A.; Virshup, Isaac; Heidari, Elyas; Treis, Tim; Vierdag, Wouter-Michiel; Toth, Marcella; Stockhaus, Sonja; Shrestha, Rahul B.; Rombaut, Benjamin; Pollaris, Lotte; Lehner, Laurens; Voehringer, Harald; Kats, Ilia; Saeys, Yvan; Saka, Sinem K.; Huber, Wolfgang; Gerstung, Moritz; Moore, Josh; Theis, Fabian J.; Stegle, Oliver Share Save
The scverse project provides a computational ecosystem for single-cell omics data analysis Virshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Berger, Bonnie; Pe'er, Dana; Regev, Aviv; Teichmann, Sarah; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre D.; Buettner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max C.; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte; Ramirez, Fidel A.; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna; Valiollah Pour Amiri, Valeh; Weiler, Philipp J.; Xing, Galen Share Save
Squidpy: a scalable framework for spatial omics analysis Palla, Giovanni; Spitzer, Hannah; Klein, Michal; Fischer, David; Schaar, Anna Christina; Kuemmerle, Louis Benedikt; Rybakov, Sergei; Ibarra, Ignacio L.; Holmberg, Olle; Virshup, Isaac; Lotfollahi, Mohammad; Richter, Sabrina; Theis, Fabian J. Share Save
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Wnt addiction of genetically defined cancers reversed by PORCN inhibition Madan, B.; Ke, Z.; Harmston, N.; Ho, S. Y.; Frois, A. O.; Alam, J.; Jeyaraj, D. A.; Pendharkar, V.; Ghosh, K.; Virshup, I. H.; Manoharan, V.; Ong, E. H. Q.; Sangthongpitag, K.; Hill, J.; Petretto, E.; Keller, T. H.; Lee, M. A.; Matter, A.; Virshup, D. M. Share Save
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