David W. Eyre - Publications, H-index & Citations

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David W. Eyre

university of oxford

89H-index

438Paper Count

3.3WCitation Count

Published Papers 149

Publication Date

Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains

Nature Communications

IF15.7

2026-08-26

OAAI

Diane Pople; Tjibbe Donker; Olisaeloka Nsonwu; Dakshika Jeyaratnam; Dimple Chudasama; Russell Hope; Susan Hopkins; Mark H. Wilcox; David W. Eyre; A. Sarah Walker; Julie V. Robotham

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From potential to practice: a UK national roadmap to implement pathogen whole-genome sequencing in infection prevention and control

Lancet Microbe

IF20.4

2026-07-31

OAAI

James R Price; Jonathan A Otter; Luke B Snell; David W Eyre; Beatriz Larru Martinez; David Williams; Daniella Pires; Frances Davies; Trupti Patel; Elaine Cloutman-Green; Colin S Brown; Maria Krutikov; Jasmin Islam; Benjamin J Parcell; Shanom Ali; Yu Wan; Charlene Rodrigues; Nicole Stoesser; Elita Jauneikaite

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Rapid diagnosis of common, undetected, and uncultivable bloodstream infections from positive blood cultures using Oxford Nanopore sequencing: a metagenomic pipeline analysis

The Lancet Microbe

IF0

2026-05-14

OAAI

Kumeren N Govender; Teresa L Street; Nicholas D Sanderson; Laura Leach; Marcus Morgan; David W Eyre

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Treatment of enteric fever (typhoid and paratyphoid fever) with cephalosporins: a Cochrane review

Emergencias

IF6.3

2026-02-01

PREAI

Kuehn, Rebecca; Stoesser, Nicole; Eyre, David; Darton, Thomas C.; Basnyat, Buddha; Parry, Christopher Martin

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The potential of a centrally-implemented system for national surveillance of bloodstream infections in England, compared to current local surveillance, 2023-2024

Journal of Hospital Infection

IF3.1

2025-12-02

OAAI

Jack Cregan; Olisaeloka Nsonwu; Dimple Chudasama; Susan Hopkins; Berit Muller-Pebody; Russell Hope; Colin Brown; David W. Eyre; T.Phuong Quan; A.Sarah Walker

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Plasmid dynamics driving carbapenemase gene dissemination in healthcare environments: a nationwide analysis of closed Enterobacterales genomes

Nature Communications

IF15.7

2025-10-28

OAAI

Vanessa Koh; Rodrigo Cabrera; Prakki Sai Rama Sridatta; Natascha May Thevasagayam; Ze Qin Lim; Kalisvar Marimuthu; Indumathi Venkatachalam; Benjamin Pei Zhi Cherng; Raymond Kok Choon Fong; Surinder Kaur Pada; Say Tat Ooi; Nares Smitasin; Koh Cheng Thoon; Li Yang Hsu; Tse Hsien Koh; Partha Pratim De; Thean Yen Tan; Douglas Chan; Rama Narayana Deepak; Nancy Wen Sim Tee; Yunn-Hwen Gan; William Matlock; David W. Eyre; Michelle Ang; Raymond Tzer Pin Lin; Jeanette Teo; Oon Tek Ng

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Benchmarking transformer-based models for medical record de-identification in a single center multi-specialty evaluation

iScience

IF4.1

2025-10-08

OAAI

Rachel Kuo; Andrew A.S. Soltan; Ciaran O’Hanlon; Alan Hasanic; David A. Clifton; Gary Collins; Dominic Furniss; David W. Eyre

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Machine learning and statistical inference in microbial population genomics

Genome Biology

IF9.4

2025-10-03

OAAI

Samuel K. Sheppard; Nicolas Arning; David W. Eyre; Daniel J. Wilson

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A collaborative large language model for drug analysis

Nature Biomedical Engineering

IF26.6

2025-09-23

OAAI

Hongjian Zhou; Fenglin Liu; Jinge Wu; Wenjun Zhang; Guowei Huang; Lei Clifton; David Eyre; Haochen Luo; Fengyuan Liu; Kim Branson; Patrick Schwab; Xian Wu; Yefeng Zheng; Anshul Thakur; David A. Clifton

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An Electronic Health Record-Wide Association Study to identify populations at increased risk of E. coli bloodstream infections

Journal of Infection

IF11.9

2025-09-03

OAAI

Emma Pritchard; Karina-Doris Vihta; Samuel Lipworth; Koen B. Pouwels; Nicole Stoesser; Russell Hope; Berit Muller-Pebody; T. Phuong Quan; Jack Cregan; Colin Brown; Susan Hopkins; David W. Eyre; A. Sarah Walker

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Evaluation of SARS-CoV-2 lateral flow device sensitivity: a comparison of systematic laboratory assessments with manufacturer-reported sensitivity

eClinicalMedicine

IF10

2025-08-27

OAAI

Raghavendran Kulasegaran-Shylini; Abbie Bown; Tom Collinge; Alex Sienkiewicz; David W. Eyre; Derrick Crook; Ann Sarah Walker; John Bell; Deborah A. Williamson; Isabel Oliver; Mark Wilcox; Sue Hill; Tim Peto; Richard Vipond; Susan Hopkins; Tom Fowler

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Transformers and large language models are efficient feature extractors for electronic health record studies

COMMUNICATIONS MEDICINE

IF6.3

2025-03-21

OAAI

Yuan, Kevin; Yoon, Chang Ho; Gu, Qingze; Munby, Henry; Walker, A. Sarah; Zhu, Tingting; Eyre, David W.

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The impact of antimicrobial stewardship ward rounds on antimicrobial use and predictors of advice, uptake, and outcomes

JOURNAL OF INFECTION

IF11.9

2025-02-01

OAAI

Eyre, David W.; Pill, Gemma; Herin, Caroline; O'Riordan, Bernadette; Izzard, Douglas; Dunsmure, Louise

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Multiple introductions of NRCS- A Staphylococcus capitis to the neonatal intensive care unit drive neonatal bloodstream infections: a case- control and environmental genomic survey

MICROBIAL GENOMICS

IF4

2025-01-07

OAAI

Lees, Emily A.; Gentry, Jessica; Webster, Hermione; Sanderson, Nicholas; Eyre, David; Wilson, Daniel; Lipworth, Sam; Crook, Derrick; Wong, T. H. Nicholas; Mark, Anthony; Jeffery, Katie; Paulus, Stephane; Young, Bernadette C.

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Addition of Macrolide Antibiotics for Hospital Treatment of Community-Acquired Pneumonia

JOURNAL OF INFECTIOUS DISEASES

IF4.5

2024-12-24

PREAI

Wei, Jia; Walker, A. Sarah; Eyre, David W.

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Predicting individual patient and hospital-level discharge using machine learning

COMMUNICATIONS MEDICINE

IF6.3

2024-11-18

OAAI

Wei, Jia; Zhou, Jiandong; Zhang, Zizheng; Yuan, Kevin; Gu, Qingze; Luk, Augustine; Brent, Andrew J.; Clifton, David A.; Walker, A. Sarah; Eyre, David W.

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Comparison of direct cDNA and PCR-cDNA Nanopore sequencing of RNA from Escherichia coli isolates

MICROBIAL GENOMICS

IF4

2024-10-25

OAAI

Rodger, Gillian; Lipworth, Samuel; Barrett, Lucinda; Oakley, Sarah; Crook, Derrick W.; Eyre, David W.; Stoesser, Nicole

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Predicting future hospital antimicrobial resistance prevalence using machine learning

COMMUNICATIONS MEDICINE

IF6.3

2024-10-10

OAAI

Vihta, Karina-Doris; Pritchard, Emma; Pouwels, Koen B.; Hopkins, Susan; Guy, Rebecca L.; Henderson, Katherine; Chudasama, Dimple; Hope, Russell; Muller-Pebody, Berit; Walker, Ann Sarah; Clifton, David; Eyre, David W.

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'Bloodstream infection': A valuable concept we should keep in our toolbox

JOURNAL OF INFECTION

IF11.9

2024-10-01

PREAI

Danielsen, Anders Skyrud; Gu, Qingze; Fostervold, Aasmund; Eyre, David W.; Bjornholt, Jorgen Vildershoj

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Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

JAC-ANTIMICROBIAL RESISTANCE

IF3.3

2024-09-03

OAAI

Stoesser, N.; George, R.; Aiken, Z.; Phan, H. T. T.; Lipworth, S.; Quan, T. P.; Mathers, A. J.; De Maio, N.; Seale, A. C.; Eyre, D. W.; Vaughan, A.; Swann, J.; Peto, T. E. A.; Crook, D. W.; Cawthorne, J.; Dodgson, A.; Walker, A. S.

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Research Directions