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Spatial transcriptomics reveals human cortical layer and area specification Qian, Xuyu; Coleman, Kyle; Jiang, Shunzhou; Kriz, Andrea J.; Marciano, Jack H.; Luo, Chunyu; Cai, Chunhui; Manam, Monica Devi; Caglayan, Emre; Lai, Abbe; Exposito-Alonso, David; Otani, Aoi; Ghosh, Urmi; Shao, Diane D.; Andersen, Rebecca E.; Neil, Jennifer E.; Johnson, Robert; LeFevre, Alexandra; Hecht, Jonathan L.; Micali, Nicola; Sestan, Nenad; Rakic, Pasko; Miller, Michael B.; Sun, Liang; Stringer, Carsen; Li, Mingyao; Walsh, Christopher A. Share Save
Gut metagenomes reveal interactions between dietary restriction, ageing and the microbiome in genetically diverse mice Litichevskiy, Lev; Considine, Maya; Gill, Jasleen; Shandar, Vasuprada; Cox, Timothy O.; Descamps, Helene C.; Wright, Kevin M.; Amses, Kevin R.; Dohnalova, Lenka; Liou, Megan J.; Tetlak, Monika; Galindo-Fiallos, Mario R.; Wong, Andrea C.; Lundgren, Patrick; Kim, Junwon; Uhr, Giulia T.; Rahman, Ryan J.; Mason, Sydney; Merenstein, Carter; Bushman, Frederic D.; Raj, Anil; Harding, Fiona; Chen, Zhenghao; Prateek, G. V.; Mullis, Martin; Deighan, Andrew G.; Robinson, Laura; Tanes, Ceylan; Bittinger, Kyle; Chakraborty, Meenakshi; Bhatt, Ami S.; Li, Hongzhe; Barnett, Ian; Davenport, Emily R.; Broman, Karl W.; Levy, Maayan; Cohen, Robert L.; Botstein, David; Freund, Adam; Di Francesco, Andrea; Churchill, Gary A.; Li, Mingyao; Thaiss, Christoph A. Share Save
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Characterization of a Natural Accession of Elymus sibiricus with In Situ Hybridization and Agronomic Evaluation Liu, Yizhuo; Ding, Jiarui; Wu, Chunfei; Song, Weiwei; Zhao, Xinyu; Zhao, Haibin; Qu, Yunfeng; Jin, Hui; Zhang, Rui; Li, Mingyao; Yan, Xinyu; Zhu, Liangyu; Bao, Yaqi; Liu, Dianhao; Li, Xinling; Cui, Lei; Li, Hongjie; Zhang, Yanming Share Save
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Single-cell multi-omic and spatial profiling of human kidneys implicates the fibrotic microenvironment in kidney disease progression Abedini, Amin; Levinsohn, Jonathan; Klotzer, Konstantin A.; Dumoulin, Bernhard; Ma, Ziyuan; Frederick, Julia; Dhillon, Poonam; Balzer, Michael S.; Shrestha, Rojesh; Liu, Hongbo; Vitale, Steven; Bergeson, Andi M.; Devalaraja-Narashimha, Kishor; Grandi, Paola; Bhattacharyya, Tanmoy; Hu, Erding; Pullen, Steven S.; Boustany-Kari, Carine M.; Guarnieri, Paolo; Karihaloo, Anil; Traum, Daniel; Yan, Hanying; Coleman, Kyle; Palmer, Matthew; Sarov-Blat, Lea; Morton, Lori; Hunter, Christopher A.; Kaestner, Klaus H.; Li, Mingyao; Susztak, Katalin Share Save
Pan-cancer characterization of cancer cell state and plasticity using spatially resolved transcriptomics Pei, Guangsheng; Cho, Kyung S.; Liu, Yunhe; Alejandra, Serrano; Lazcano, Rossana; Dai, Enyu; Han, Guangchun; Peng, Fuduan; Zhang, Daiwei; Chu, Yanshuo; Sinjab, Ansam F.; Jiang, Jiahui; Li, Mingyao; Yee, Cassian; Futreal, Andrew; Lazar, Alex; Kadara, Humam; Gao, Jianjun; Soto, Luisa M.; Maitra, Anirban; Ajani, Jaffer; Wang, Linghua Share Save
METI: Deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics Jiang, Jiahui; Liu, Yunhe; Qin, Jiangjiang; Wu, Jingjing; Chen, Jianfeng; Pizzi, Melissa; Segura, Rossana; Yamashita, Kohei; Xu, Zhiyuan; Pei, Guangsheng; Cho, Kyung Serk; Chu, Yanshuo; Sinjab, Ansam; Peng, Fuduan; Han, Guangchun; Wang, Ruiping; Yan, Xinmiao; Dai, Enyu; Li, Mingyao; Futreal, Andrew; Maitra, Anirban; Lazar, Alexander; Cheng, Xiangdong; Kadara, Humam; Ajani, Jaffer; Jazaeri, Amir; Hu, Jian; Wang, Linghua; Gao, Jianjun Share Save
A multimodal spatial-omics atlas of lung precancer and progression to adenocarcinoma Sinjab, Ansam; Peng, Fuduan; Liu, Yunhe; Yang, Sujuan; Zhou, Tieling; Serrano, Alejandra G.; Feng, Jiping; Bolanos, Lorena Gomez; Han, Guangchun; Rosen, Daniel Gustavo; Swisher, Stephen G.; Spira, Avrum; Dubinett, Steven M.; Soto, Luisa M. Solis; Li, Mingyao; Fujimoto, Junya; Burks, Jared; Wistuba, Ignacio I.; Wang, Linghua; Kadara, Humam Share Save
iStarTLS: Advanced detection and phenotyping of tertiary lymphoid structures Cho, Kyung Serk; Jiang, Jiahui; Zhang, Daiwei; Liu, Yunhe; Chen, Jianfeng; Segura, Rossana L.; Yan, Xinmiao; Pei, Guangsheng; Soto, Luisa M.; Chu, Yanshuo; Sinjab, Ansam F.; Yee, Cassian; Kopetz, Scott; Maitra, Anirban; Futreal, Andrew; Lazar, Alexander; Jazaeri, Amir A.; Kadara, Humam; Gao, Jianjun; Li, Mingyao; Wang, Linghua Share Save
Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry Zhang, Qihuang; Jiang, Shunzhou; Schroeder, Amelia; Hu, Jian; Li, Kejie; Zhang, Baohong; Dai, David; Lee, Edward B.; Xiao, Rui; Li, Mingyao Share Save
Hierarchical contribution of individual lifestyle factors and their interactions on adenomatous and serrated polyp risk Kim, Jihee; Nath, Kirti; Schmidlin, Kurt; Schaufelberger, Helen; Quattropani, Christiana; Vannini, Simone; Mossi, Sandro; Thumshirn, Miriam; Manz, Michael; Litichevskiy, Lev; Fan, Jiaxin; Dmitrieva-Posocco, Oxana; Li, Mingyao; Levy, Maayan; Schar, Primo; Zwahlen, Marcel; Thaiss, Christoph A.; Truninger, Kaspar Share Save
Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance Chu, Yanshuo; Dai, Enyu; Li, Yating; Han, Guangchun; Pei, Guangsheng; Ingram, Davis R. R.; Thakkar, Krupa; Qin, Jiang-Jiang; Dang, Minghao; Le, Xiuning; Hu, Can; Deng, Qing; Sinjab, Ansam; Gupta, Pravesh; Wang, Ruiping; Hao, Dapeng; Peng, Fuduan; Yan, Xinmiao; Liu, Yunhe; Song, Shumei; Zhang, Shaojun; Heymach, John V. V.; Reuben, Alexandre; Elamin, Yasir Y. Y.; Pizzi, Melissa P. P.; Lu, Yang; Lazcano, Rossana; Hu, Jian; Li, Mingyao; Curran, Michael; Futreal, Andrew; Maitra, Anirban; Jazaeri, Amir A. A.; Ajani, Jaffer A. A.; Swanton, Charles; Cheng, Xiang-Dong; Abbas, Hussein A. A.; Gillison, Maura; Bhat, Krishna; Lazar, Alexander J. J.; Green, Michael; Litchfield, Kevin; Kadara, Humam; Yee, Cassian; Wang, Linghua Share Save
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