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Stress testing deep learning models for prostate cancer detection on biopsies and surgical specimens Flannery, Brennan T.; Sandler, Howard M.; Lal, Priti; Feldman, Michael D.; Santa-Rosario, Juan C.; Pathak, Tilak; Mirtti, Tuomas; Farre, Xavier; Correa, Rohann; Chafe, Susan; Shah, Amit; Efstathiou, Jason A.; Hoffman, Karen; Hallman, Mark A.; Straza, Michael; Jordan, Richard; Pugh, Stephanie L.; Feng, Felix; Madabhushi, Anant Share Save
Brief Report: Impact of Reflex Testing on Tissue-Based Molecular Genotyping in Patients With Advanced Non-Squamous Non-Small Cell Lung Cancer Marmarelis, Melina E.; Scholes, Dylan G.; Mcgrath, Cindy M.; Priore, Salvatore F.; Roth, Jacquelyn J.; Feldman, Michael; Morrissette, Jennifer J. D.; Litzky, Leslie; Deshpande, Charu; Thompson, Jeffrey C.; Doucette, Abigail; Gabriel, Peter E.; Sun, Lova; Singh, Aditi P.; Cohen, Roger B.; Langer, Corey J.; Carpenter, Erica L.; Aggarwal, Charu Share Save
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Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology Zhang, Daiwei; Schroeder, Amelia; Yan, Hanying; Yang, Haochen; Hu, Jian; Lee, Michelle Y. Y.; Cho, Kyung S.; Susztak, Katalin; Xu, George X.; Feldman, Michael D.; Lee, Edward B.; Furth, Emma E.; Wang, Linghua; Li, Mingyao Share Save
Chimeric kinase ALK induces expression of NAMPT and selectively depends on this metabolic enzyme to sustain its own oncogenic function Zhang, Qian; Basappa, Johnvesly; Wang, Hong Y.; Nunez-Cruz, Selene; Lobello, Cosimo; Wang, Shengchun; Liu, Xiaobin; Chekol, Seble; Guo, Lili; Ziober, Amy; Nejati, Reza; Shestov, Alex; Feldman, Michael; Glickson, Jerry D.; Turner, Suzanne D.; Blair, Ian A.; Van Dang, Chi; Wasik, Mariusz A. Share Save
A metagenomic analysis of the virome of inverted papilloma and squamous cell carcinoma Tong, Charles C. L.; Lin, Xiang; Seckar, Tyler; Koptyra, Mateusz; Kohanski, Michael A.; Cohen, Noam A.; Kennedy, David W.; Adappa, Nithin D.; Papagiannopoulos, Peter; Kuan, Edward C.; Baranov, Esther; Jalaly, Jalal B.; Feldman, Michael D.; Storm, Phillip B.; Resnick, Adam C.; Palmer, James N.; Wei, Zhi; Robertson, Erle S. Share Save
Computational pathology improves risk stratification of a multi-gene assay for early stage ER+ breast cancer Chen, Yuli; Li, Haojia; Janowczyk, Andrew; Toro, Paula; Corredor, German; Whitney, Jon; Lu, Cheng; Koyuncu, Can F.; Mokhtari, Mojgan; Buzzy, Christina; Ganesan, Shridar; Feldman, Michael D.; Fu, Pingfu; Corbin, Haley; Harbhajanka, Aparna; Gilmore, Hannah; Goldstein, Lori J.; Davidson, Nancy E.; Desai, Sangeeta; Parmar, Vani; Madabhushi, Anant Share Save
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The Penn Medicine BioBank: Towards a Genomics-Enabled Learning Healthcare System to Accelerate Precision Medicine in a Diverse Population Verma, Anurag; Damrauer, Scott M.; Naseer, Nawar; Weaver, JoEllen; Kripke, Colleen M.; Guare, Lindsay; Sirugo, Giorgio; Kember, Rachel L.; Drivas, Theodore G.; Dudek, Scott M.; Bradford, Yuki; Lucas, Anastasia; Judy, Renae; Verma, Shefali S.; Meagher, Emma; Nathanson, Katherine L.; Feldman, Michael; Ritchie, Marylyn D.; Rader, Daniel J. Share Save
Ruxolitinib and exemestane for estrogen receptor positive, aromatase inhibitor resistant advanced breast cancer Makhlin, Igor; McAndrew, Nicholas P.; Wileyto, E. Paul; Clark, Amy S.; Holmes, Robin; Bottalico, Lisa N.; Mesaros, Clementina; Blair, Ian A.; Jeschke, Grace R.; Fox, Kevin R.; Domchek, Susan M.; Matro, Jennifer M.; Bradbury, Angela R.; Feldman, Michael D.; Hexner, Elizabeth O.; Bromberg, Jacqueline F.; DeMichele, Angela Share Save
Analysis of matched primary and recurrent BRCA1/2 mutation-associated tumors identifies recurrence-specific drivers Shah, Jennifer B.; Pueschl, Dana; Wubbenhorst, Bradley; Fan, Mengyao; Pluta, John; D'Andrea, Kurt; Hubert, Anna P.; Shilan, Jake S.; Zhou, Wenting; Kraya, Adam A.; Guevara, Alba Llop; Ruan, Catherine; Serra, Violeta; Balmana, Judith; Feldman, Michael; Morin, Pat J.; Nayak, Anupma; Maxwell, Kara N.; Domchek, Susan M.; Nathanson, Katherine L. Share Save
Association of Residual Ductal Carcinoma In Situ With Breast Cancer Recurrence in the Neoadjuvant I-SPY2 Trial Osdoit, Marie; Yau, Christina; Symmans, W. Fraser; Boughey, Judy C.; Ewing, Cheryl A.; Balassanian, Ron; Chen, Yunn-Yi; Krings, Gregor; Wallace, Anne M.; Zare, Somaye; Fadare, Oluwole; Lancaster, Rachael; Wei, Shi; Godellas, Constantine, V; Tang, Ping; Tuttle, Todd M.; Klein, Molly; Sahoo, Sunati; Hieken, Tina J.; Carter, Jodi M.; Chen, Beiyun; Ahrendt, Gretchen; Tchou, Julia; Feldman, Michael; Tousimis, Eleni; Zeck, Jay; Jaskowiak, Nora; Sattar, Husain; Naik, Arpana M.; Lee, Marie Catherine; Rosa, Marilin; Khazai, Laila; Rendi, Mara H.; Lang, Julie E.; Lu, Janice; Tawfik, Ossama; Asare, Smita M.; Esserman, Laura J.; Mukhtar, Rita A. Share Save
ARTICLE Impact of integrating genomic data into the electronic health record on genetics care delivery Lau-Min, Kelsey S.; McKenna, Danielle; Asher, Stephanie Byers; Bardakjian, Tanya; Wollack, Colin; Bleznuck, Joseph; Biros, Daniel; Anantharajah, Arravinth; Clark, Dana F.; Condit, Courtney; Ebrahimzadeh, Jessica E.; Long, Jessica M.; Powers, Jacquelyn; Raper, Anna; Schoenbaum, Anna; Feldman, Michael; Steinfeld, Lauren; Tuteja, Sony; VanZandbergen, Christine; Domchek, Susan M.; Ritchie, Marylyn D.; Landgraf, Jeffrey; Chen, Jessica; Nathanson, Katherine L. Share Save
Spatial interplay patterns of cancer nuclei and tumor-infiltrating lymphocytes (TILs) predict clinical benefit for immune checkpoint inhibitors Wang, Xiangxue; Barrera, Cristian; Bera, Kaustav; Viswanathan, Vidya Sankar; Azarianpour-Esfahani, Sepideh; Koyuncu, Can; Velu, Priya; Feldman, Michael D.; Yang, Michael; Fu, Pingfu; Schalper, Kurt A.; Mahdi, Haider; Lu, Cheng; Velcheti, Vamsidhar; Madabhushi, Anant Share Save
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Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes Fasolino, Maria; Schwartz, Gregory W.; Patil, Abhijeet R.; Mongia, Aanchal; Golson, Maria L.; Wang, Yue J.; Morgan, Ashleigh; Liu, Chengyang; Schug, Jonathan; Liu, Jinping; Wu, Minghui; Traum, Daniel; Kondo, Ayano; May, Catherine L.; Goldman, Naomi; Wang, Wenliang; Feldman, Michael; Moore, Jason H.; Japp, Alberto S.; Betts, Michael R.; Faryabi, Robert B.; Naji, Ali; Kaestner, Klaus H.; Vahedi, Golnaz Share Save
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