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NONINVASIVE DETECTION OF GLIOMAS VIA PLASMA CFDNA FRAGMENTOME PROFILING Mathios, Dimitrios; Niknafs, Noushin; Annapragada, Akshaya; Bobeff, Ernest; Park, Chul-Kee; Lim, Michael; Jackson, Christopher; Phallen, Jillian; Scharpf, Robert; Velculescu, Victor Share Save
Genome-wide analyses of cell-free DNA for therapeutic monitoring of patients with pancreatic cancer Hruban, Carolyn; Bruhm, Daniel C.; Chen, Inna M.; Koul, Shashikant; Annapragada, Akshaya V.; Vulpescu, Nicholas A.; Short, Sarah; Theile, Susann; Boyapati, Kavya; Alipanahi, Bahar; Skidmore, Zachary L.; Leal, Alessandro; Cristiano, Stephen; Adleff, Vilmos; Johannsen, Julia S.; Scharpf, Robert B.; Foda, Zachariah H.; Phallen, Jillian; Velculescu, Victor E. Share Save
DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation Noe, Michael; Mathios, Dimitrios; Annapragada, Akshaya V.; Koul, Shashikant; Foda, Zacharia H.; Medina, Jamie E.; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation Noe, Michael; Annapragada, Akshaya V.; Foda, Zachariah H.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Liquid biopsy approaches for monitoring metastatic pancreatic cancer in immunotherapy treated patients Hruban, Carolyn Anna; Chen, Inna; Bruhm, Daniel C.; Koul, Shashikant; Yao, Jennie; Theile, Susann; Boyapati, Kavya; Vulpescu, Nicholas A.; Annapragada, Akshaya; Ferreira, Leonardo; Cristiano, Stephen; Foda, Zachariah H.; Adleff, Vilmos; Johansen, Julia; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Genome-wide repeat landscapes in cancer and cell-free DNA Annapragada, Akshaya; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Comprehensive genomic and transcriptomic analyses capture the effects of epigenetic therapy priming on immune checkpoint blockade response in non-small cell lung cancer Landon, Blair V.; Marrone, Kristen A.; Topper, Michael J.; Annapragada, Akshaya; Tsai, Hua-Ling; Balan, Archana; Niknafs, Noushin; Cherry, Christopher; White, James R.; Pereira, Gavin; Adleff, Vilmos; Hu, Chen; Riemer, Joanne; Fitzpatrick, Margaret; Forde, Patrick; Hann, Christine L.; Kelly, Ronan J.; Ettinger, David S.; Levy, Benjamin; Nieva, Jorge; Herman, James; Velculescu, Victor E.; Baylin, Stephen; Brahmer, Julie; Anagnostou, Valsamo Share Save
Variation of cell-free DNA concentrations in liquid biopsies Short, Sarah; Annapragada, Akshaya V.; Medina, Jamie E.; Foda, Zachariah H.; Mathios, Dimitrios; Hruban, Carolyn; Chiao, Elaine J.; Boyapati, Kavya; Bartolomucci, Adrianna; Boyapati, Keerti; Adleff, Vilmos; Scharpf, Robert B.; Velculescu, Victor E.; Phallen, Jillian Share Save
Genome-wide repeat landscapes in cancer and cell-free DNA Annapragada, Akshaya V.; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
H2Bub1 loss is an early contributor to clear cell ovarian cancer progression Ferrari, Adam J.; Rawat, Priyanka; Rendulich, Hannah S.; Annapragada, Akshaya, V; Kinose, Yasuto; Zhang, Xiaoming; Devins, Kyle; Budina, Anna; Scharpf, Robert B.; Mitchell, Marilyn A.; Tanyi, Janos L.; Morgan, Mark A.; Schwartz, Lauren E.; Soong, T. Rinda; Velculescu, Victor E.; Drapkin, Ronny Share Save
Early detection of ovarian cancer using cell-free DNA fragmentomes Annapragada, Akshaya V.; Medina, Jamie E.; Lof, Pien; Mathios, Dimitrios; Foda, Zachariah H.; Noe, Michael; Short, Sarah; Bartolomucci, Adrianna; Bruhm, Daniel C.; Jung, Euihye; Canzoniero, Jenna; Niknafs, Noushin; Cristiano, Stephen; Adleff, Vilmos; Symecko, Heather; van de Broek, Daan; Baylin, Stephen B.; Press, Michael F.; Slamon, Dennis; Konecny, Gottfried; Domchek, Susan; Drapkin, Ronny; Phallen, Jillian; Scharpf, Robert B.; Lok, Christianne; Velculescu, Victor E. Share Save
Detecting Liver Cancer Using Cell-Free DNA Fragmentomes Foda, Zachariah H.; Annapragada, Akshaya, V; Boyapati, Kavya; Bruhm, Daniel C.; Vulpescu, Nicholas A.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Niknafs, Noushin; Luu, Harry T.; Goggins, Michael G.; Anders, Robert A.; Sun, Jing; Meta, Shruti H.; Thomas, David L.; Kirk, Gregory D.; Adleff, Vilmos; Phallen, Jillian; Scharpf, Robert B.; Kim, Amy K.; Velculescu, Victor E. Share Save
Detection and characterization of lung cancer using cell-free DNA fragmentomes Mathios, Dimitrios; Johansen, Jakob Sidenius; Cristiano, Stephen; Medina, Jamie E.; Phallen, Jillian; Larsen, Klaus R.; Bruhm, Daniel C.; Niknafs, Noushin; Ferreira, Leonardo; Adleff, Vilmos; Chiao, Jia Yuee; Leal, Alessandro; Noe, Michael; White, James R.; Arun, Adith S.; Hruban, Carolyn; Annapragada, Akshaya, V; Jensen, Sarah Ostrup; Orntoft, Mai-Britt Worm; Madsen, Anders Husted; Carvalho, Beatriz; de Wit, Meike; Carey, Jacob; Dracopoli, Nicholas C.; Maddala, Tara; Fang, Kenneth C.; Hartman, Anne-Renee; Forde, Patrick M.; Anagnostou, Valsamo; Brahmer, Julie R.; Fijneman, Remond J. A.; Nielsen, Hans Jorgen; Meijer, Gerrit A.; Andersen, Claus Lindbjerg; Mellemgaard, Anders; Bojesen, Stig E.; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Variation in SARS-CoV-2 outbreaks across sub-Saharan Africa Rice, Benjamin L.; Annapragada, Akshaya; Baker, Rachel E.; Bruijning, Marjolein; Dotse-Gborgbortsi, Winfred; Mensah, Keitly; Miller, Ian F.; Motaze, Nkengafac Villyen; Raherinandrasana, Antso; Rajeev, Malavika; Rakotonirina, Julio; Ramiadantsoa, Tanjona; Rasambainarivo, Fidisoa; Yu, Weiyu; Grenfell, Bryan T.; Tatem, Andrew J.; Metcalf, C. Jessica E. Share Save
Study Protocol: A Cross-Sectional Examination of Socio-Demographic and Ecological Determinants of Nutrition and Disease Across Madagascar Golden, Christopher D.; Rice, Benjamin L.; Randriamady, Hervet J.; Vonona, Arisoa Miadana; Randrianasolo, Jean Frederick; Tafangy, Ambinintsoa Nirina; Andrianantenaina, Mamy Yves; Arisco, Nicholas J.; Emile, Gauthier N.; Lainandrasana, Faustin; Mahonjolaza, Robuste Fenoarison Faraniaina; Raelson, Hermann Paratoaly; Rakotoarilalao, Vololoniaina Ravo; Rakotomalala, Anjaharinony Andry Ny Aina; Rasamison, Alex Dominique; Mahery, Rebaliha; Tantely, M. Luciano; Girod, Romain; Annapragada, Akshaya; Wesolowski, Amy; Winter, Amy; Hartl, Daniel L.; Hazen, James; Metcalf, C. Jessica E. Share Save
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Conjugate-SELEX, a novel screening method, identifies aptamers that deliver payload to the cytosol of target cells Mu, Qingshan; Annapragada, Akshaya; Srivastava, Mayank; Thiviyanathan, Varatharasa; Li, Xin; Gorenstein, David; Annapragada, Annanth; Vigneswaran, Nadarajah Share Save
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