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R

ROBERT FINN

european molecular biology laboratory european bioinformatics institute

83H-index
1.1KPaper Count
9.8WCitation Count
Published Papers 105
Publication Date
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“Quadrupling” the protein family space with global metagenomics
errNucleic Acids Research
IF13.1
err2026-09-28
err0
errOAAI
errEleni Aplakidou; Fotis A Baltoumas; Maria N Chasapi; Efthimia Lamari; Iro N Chasapi; IIias Georgakopoulos-Soares; Evangelos Karatzas; Ioannis Iliopoulos; Aydin Buluç; Robert D Finn; Antonio Pedro Camargo; Nikos C Kyrpides; Georgios A Pavlopoulos
errShare
errSave
Integrating multi-omics technologies to decipher microbiome functions
errNature Communications
IF15.7
err2026-09-08
err0
errOAAI
errTim Van Den Bossche; Eunice Adeline Lazau; Velma T. E. Aho; J. Alfredo Blakeley-Ruiz; Maximilian Wolf; Benoit Josef Kunath; Luis E. Valentin-Alvarado; Patrick Hellwig; Pieter Verschaffelt; Andrew T. Rajczewski; Jannie. G. E. Henderickx; Tomi Suomi; Feng Xian; Shruti Shah; Lennart Martens; Dirk Benndorf; Samir R. Damare; Bastiaan Willem Haak; Sven-Bastiaan Haange; Paul D. Piehowski; Anne Kupczok; Daniel Figeys; Bart Mesuere; Magnus Palmblad; Robert L. Hettich; Laura L. Elo; Juan Antonio Vizcaíno; Neha Garg; Zhong Wang; Muzaffer Arıkan; Lee Ann McCue; Timothy J. Griffin; Laure-Alix Clerbaux; Robert Heyer; Marnix H. Medema; Sabine Matallana-Surget; David Gomez-Varela; Thilo Muth; Bree Tillett; Jean Armengaud; Robert D. Finn; Paul Wilmes; J. Gregory Caporaso; Lucia Grenga; Pratik Dilip Jagtap
errShare
errSave
A comprehensive AMR genotype–phenotype database (CABBAGE)
errNucleic Acids Research
IF13.1
err2026-08-24
err0
errOAAI
errEmily Dickens; Romain Derelle; Robert Beardmore; Anita Suresh; Swapna Uplekar; Andrey G Azov; Tatiana A Gurbich; Bilal El Houdaigui; Jon Keatley; Sofiia Ochkalova; Orges Koci; Nadim M Rahman; Anu Shivalikanjli; Andrea Winterbottom; Galabina Yordanova; Helen Parkinson; Andrew D Yates; Robert D Finn; John A Lees; Leonid Chindelevitch; null
errShare
errSave
PIMENTO: a primer inference toolkit to facilitate large-scale calling of amplicon sequence variants
errGigaScience
IF3.9
err2026-07-31
err0
errOAAI
errChristian Atallah; Lorna Richardson; Martin Beracochea; Robert D Finn
errShare
errSave
From “synthetic” to defined microbial communities for clearer terminology
errNature Communications
IF15.7
err2026-06-08
err0
errOAAI
errHanna Koch; Thomas Clavel; Cintia Mayr; Benjamin L. Coltman; Michael Schloter; Julia A. Vorholt; Yolanda Sanz; Tomislav Cernava; Gwyn A. Beattie; Lene Lange; Stéphane Chaillou; Ákos T. Kovács; Hauke Smidt; Corné M. J. Pieterse; Tanja Kostic; Omri M. Finkel; Christopher E. Lawson; Luca Cocolin; Jesús Mercado-Blanco; Robert D. Finn; Kalliope K. Papadopoulou; Matthew Ryan; Marco Candela; Paul D. Cotter; Gabriele Berg; Orla O’Sullivan; Manuel Delgado-Baquerizo; Pankaj Trivedi; Trevor C. Charles; Brajesh K. Singh; Günter Brader; Malek Marian; Angela Sessitsch
errShare
errSave
HMMER web server: 2026 update
errNucleic Acids Research
IF13.1
err2026-04-27
err0
errOAAI
errAleksandar Rajković; Martin Beracochea; Alexander B Rogers; Sean R Eddy; Nicholas P Carter; Robert D Finn
errShare
errSave
HoloFoodR: a statistical programming framework for holo-omics data integration workflows
errBioinformatics
IF5.4
err2025-11-01
err0
errOAAI
errTuomas Borman; Artur Sannikov; Robert D Finn; Morten Tønsberg Limborg; Alexander B Rogers; Varsha Kale; Kati Hanhineva; Leo Lahti
errShare
errSave
Ensembl 2026
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err3
errOAAI
errYates, Andrew D.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Branco Lins, Paulo R.; Brooks, Lucy; Budhanuru Ramaraju, Shashank; Campbell, Lahcen, I; Carbajo Martinez, Manuel; Carpenter, Jack; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Dickson, Suzanna; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fairbrother-Browne, Aine; Falola, Oluwadamilare; Fatima, Reham; Gonzalez Martinez, Jose; Gurbich, Tatiana; Hall, Holly; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaikala, Vinay; Lazar, Anna; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela A.; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Nakib Hossain, Syed; Perez-Silva, Jose G.; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Suner, Marie-Marthe; Surapaneni, Likhitha; Tierney, Jack A. S.; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Allen, Jamie M.; Alvarez-Jarreta, Jorge; Cheema, Jitender; Batista da Rocha, Jorge; De silva, Nishadi H.; Tricomi, Francesca Floriana; Giorgetti, Stefano; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Willhoft, Natalie L.; Winterbottom, Andrea; Flint, Bethany R.; Frankish, Adam; Haggerty, Leanne; Hunt, Sarah E.; Clark, Emily L.; Dyer, Sarah C.; Freeberg, Mallory A.; Martin, Fergal J.; Finn, Robert D.
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errSave
An Approach to Integrate Metagenomics, Metatranscriptomics and Metaproteomics Data in Public Data Resources
errPROTEOMICS
IF3.9
err2025-04-28
err1
errOAAI
errShengbo Wang; Satwant Kaur; Benoit J. Kunath; Patrick May; Lorna Richardson; Alexander B. Rogers; Paul Wilmes; Robert D. Finn; Juan Antonio Vizcaíno
errShare
errSave
A holo-omics analysis shows how sugar kelp can boost gut health in Atlantic salmon
errAQUACULTURE
IF3.9
err2025-02-01
err0
PREAI
errRasmussen, Jacob A.; Bernhard, Annette; Lecaudey, Laurene A.; Kale, Varsha; Baldi, Germana; Myrmel, Lene S.; Hansen, Martin; Brealey, Jaelle C.; Mak, Sarah S. T.; Nielsen, Ida B.; Richardson, Lorna; Madsen, Lise; Kristiansen, Karsten; Gilbert, M. Thomas P.; Martin, Michael D.; Finn, Robert D.; Sveier, Harald; Limborg, Morten T.
errShare
errSave
HoloFood Data Portal: holo-omic datasets for analysing host-microbiota interactions in animal production
errDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
err2025-01-11
err0
errOAAI
errRogers, Alexander B.; Kale, Varsha; Baldi, Germana; Alberdi, Antton; Gilbert, M. Thomas P.; Gupta, Dipayan; Limborg, Morten T.; Li, Sen; Payne, Thomas; Petersen, Bent; Rasmussen, Jacob A.; Richardson, Lorna; Finn, Robert D.
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errSave
CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome
errGIGASCIENCE
IF3.9
err2025-01-01
err0
errOAAI
errBarbosa, Murilo Caminotto; Marques da Silva, Joao Fernando; Alves, Leonardo Cardoso; Finn, Robert D.; Paschoal, Alexandre Rossi
errShare
errSave
Ensembl 2025
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-12-04
err1
errOAAI
errDyer, Sarah C.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Beracochea, Martin; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Denni, Sukanya; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Falola, Oluwadamilare; Fatima, Reham; Genez, Thiago; Martinez, Jose Gonzalez; Gurbich, Tatiana; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela Alejandra; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Perez-Silva, Jose G.; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Tsang, Ian; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Cheema, Jitender; da Rocha, Jorge Batista; De Silva, Nishadi H.; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Finn, Robert D.; Freeberg, Mallory A.; Harrison, Peter W.; Martin, Fergal J.; Yates, Andrew D.
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errSave
The growing repertoire of phage anti-defence systems
errTRENDS IN MICROBIOLOGY
IF14.9
err2024-12-01
err4
errOAAI
errMurtazalieva, Khalimat; Mu, Andre; Petrovskaya, Aleksandra; Finn, Robert D.
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errSave
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-28
err1
errOAAI
errThakur, Matthew; Brooksbank, Catherine; Finn, Robert D.; Firth, Helen, V; Foreman, Julia; Freeberg, Mallory; Gurwitz, Kim T.; Harrison, Melissa; Hulcoop, David; Hunt, Sarah E.; Leach, Andrew R.; Levchenko, Mariia; Marques, Diana; Mcdonagh, Ellen M.; Mithani, Aziz; Parkinson, Helen; Perez-Riverol, Yasset; Perova, Zinaida; Sarkans, Ugis; Tirunagari, Santosh; Tzampatzopoulou, Eleni; Venkatesan, Aravind; Vizcaino, Juan-Antonio; Wingfield, Benjamin; Zdrazil, Barbara; Mcentyre, Johanna
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errSave
Diversity and specificity of molecular functions in cyanobacterial symbionts
errSCIENTIFIC REPORTS
IF3.9
err2024-08-12
err2
errOAAI
errCameron, Ellen S.; Sanchez, Santiago; Goldman, Nick; Blaxter, Mark L.; Finn, Robert D.
errShare
errSave
Innovation in metabolic nutrition: COVID-19 outreach to support patients on a low protein diet
errMOLECULAR GENETICS AND METABOLISM
IF3.5
err2024-04-01
err0
PREAI
errStelle, E. M.; McGinty, L.; Rowzer, K. D.; Finn, R.
errShare
errSave
Ensembl 2024
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-11
err83
errOAAI
errHarrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D.
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errSave
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-10-28
err11
errOAAI
errSchmidt, Thomas S. B.; Fullam, Anthony; Ferretti, Pamela; Orakov, Askarbek; Maistrenko, Oleksandr M.; Ruscheweyh, Hans-Joachim; Letunic, Ivica; Duan, Yiqian; Van Rossum, Thea; Sunagawa, Shinichi; Mende, Daniel R.; Finn, Robert D.; Kuhn, Michael; Pedro Coelho, Luis; Bork, Peer
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errSave
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data
errGIGASCIENCE
IF3.9
err2023-10-18
err1
errOAAI
errZafeiropoulos, Haris; Beracochea, Martin; Ninidakis, Stelios; Exter, Katrina; Potirakis, Antonis; De Moro, Gianluca; Richardson, Lorna; Corre, Erwan; Machado, Joao; Pafilis, Evangelos; Kotoulas, Georgios; Santi, Ioulia; Finn, Robert D.; Cox, Cymon J.; Pavloudi, Christina
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Research Directions

The data has not been retrieved yet.
Co-authors
Cooperation Journals
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Peer Bork
H-index: 233 · Papers: 950
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Panos Deloukas
H-index: 197 · Papers: 764
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Paul Flicek
H-index: 167 · Papers: 522
R
Rudolf Amann
H-index: 154 · Papers: 665
R
Richard Durbin
H-index: 149 · Papers: 467
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