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ROBERT FINN

Wellcome Trust

83H-index
1.1KPaper Count
9.8WCitation Count
Published Papers 101
Publication Date
From “synthetic” to defined microbial communities for clearer terminology
err2026-06-08
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errHanna Koch; Thomas Clavel; Cintia Mayr; Benjamin L. Coltman; Michael Schloter; Julia A. Vorholt; Yolanda Sanz; Tomislav Cernava; Gwyn A. Beattie; Lene Lange; Stéphane Chaillou; Ákos T. Kovács; Hauke Smidt; Corné M. J. Pieterse; Tanja Kostic; Omri M. Finkel; Christopher E. Lawson; Luca Cocolin; Jesús Mercado-Blanco; Robert D. Finn; Kalliope K. Papadopoulou; Matthew Ryan; Marco Candela; Paul D. Cotter; Gabriele Berg; Orla O’Sullivan; Manuel Delgado-Baquerizo; Pankaj Trivedi; Trevor C. Charles; Brajesh K. Singh; Günter Brader; Malek Marian; Angela Sessitsch
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HMMER web server: 2026 update
err2026-04-27
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errAleksandar Rajković; Martin Beracochea; Alexander B Rogers; Sean R Eddy; Nicholas P Carter; Robert D Finn
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HoloFoodR: a statistical programming framework for holo-omics data integration workflows
err2025-11-01
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errTuomas Borman; Artur Sannikov; Robert D Finn; Morten Tønsberg Limborg; Alexander B Rogers; Varsha Kale; Kati Hanhineva; Leo Lahti
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Ensembl 2026
err2025-11-01
err3
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errYates, Andrew D.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Branco Lins, Paulo R.; Brooks, Lucy; Budhanuru Ramaraju, Shashank; Campbell, Lahcen, I; Carbajo Martinez, Manuel; Carpenter, Jack; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Dickson, Suzanna; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fairbrother-Browne, Aine; Falola, Oluwadamilare; Fatima, Reham; Gonzalez Martinez, Jose; Gurbich, Tatiana; Hall, Holly; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaikala, Vinay; Lazar, Anna; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela A.; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Nakib Hossain, Syed; Perez-Silva, Jose G.; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Suner, Marie-Marthe; Surapaneni, Likhitha; Tierney, Jack A. S.; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Allen, Jamie M.; Alvarez-Jarreta, Jorge; Cheema, Jitender; Batista da Rocha, Jorge; De silva, Nishadi H.; Tricomi, Francesca Floriana; Giorgetti, Stefano; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Willhoft, Natalie L.; Winterbottom, Andrea; Flint, Bethany R.; Frankish, Adam; Haggerty, Leanne; Hunt, Sarah E.; Clark, Emily L.; Dyer, Sarah C.; Freeberg, Mallory A.; Martin, Fergal J.; Finn, Robert D.
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An Approach to Integrate Metagenomics, Metatranscriptomics and Metaproteomics Data in Public Data Resources
err2025-04-28
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errShengbo Wang; Satwant Kaur; Benoit J. Kunath; Patrick May; Lorna Richardson; Alexander B. Rogers; Paul Wilmes; Robert D. Finn; Juan Antonio Vizcaíno
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A holo-omics analysis shows how sugar kelp can boost gut health in Atlantic salmon
err2025-02-01
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PREAI
errRasmussen, Jacob A.; Bernhard, Annette; Lecaudey, Laurene A.; Kale, Varsha; Baldi, Germana; Myrmel, Lene S.; Hansen, Martin; Brealey, Jaelle C.; Mak, Sarah S. T.; Nielsen, Ida B.; Richardson, Lorna; Madsen, Lise; Kristiansen, Karsten; Gilbert, M. Thomas P.; Martin, Michael D.; Finn, Robert D.; Sveier, Harald; Limborg, Morten T.
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HoloFood Data Portal: holo-omic datasets for analysing host-microbiota interactions in animal production
err2025-01-11
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errRogers, Alexander B.; Kale, Varsha; Baldi, Germana; Alberdi, Antton; Gilbert, M. Thomas P.; Gupta, Dipayan; Limborg, Morten T.; Li, Sen; Payne, Thomas; Petersen, Bent; Rasmussen, Jacob A.; Richardson, Lorna; Finn, Robert D.
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CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome
err2025-01-01
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errBarbosa, Murilo Caminotto; Marques da Silva, Joao Fernando; Alves, Leonardo Cardoso; Finn, Robert D.; Paschoal, Alexandre Rossi
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Ensembl 2025
err2024-12-04
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errDyer, Sarah C.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Beracochea, Martin; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Denni, Sukanya; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Falola, Oluwadamilare; Fatima, Reham; Genez, Thiago; Martinez, Jose Gonzalez; Gurbich, Tatiana; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela Alejandra; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Perez-Silva, Jose G.; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Tsang, Ian; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Cheema, Jitender; da Rocha, Jorge Batista; De Silva, Nishadi H.; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Finn, Robert D.; Freeberg, Mallory A.; Harrison, Peter W.; Martin, Fergal J.; Yates, Andrew D.
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The growing repertoire of phage anti-defence systems
err2024-12-01
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errMurtazalieva, Khalimat; Mu, Andre; Petrovskaya, Aleksandra; Finn, Robert D.
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EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024
err2024-11-28
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errThakur, Matthew; Brooksbank, Catherine; Finn, Robert D.; Firth, Helen, V; Foreman, Julia; Freeberg, Mallory; Gurwitz, Kim T.; Harrison, Melissa; Hulcoop, David; Hunt, Sarah E.; Leach, Andrew R.; Levchenko, Mariia; Marques, Diana; Mcdonagh, Ellen M.; Mithani, Aziz; Parkinson, Helen; Perez-Riverol, Yasset; Perova, Zinaida; Sarkans, Ugis; Tirunagari, Santosh; Tzampatzopoulou, Eleni; Venkatesan, Aravind; Vizcaino, Juan-Antonio; Wingfield, Benjamin; Zdrazil, Barbara; Mcentyre, Johanna
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Diversity and specificity of molecular functions in cyanobacterial symbionts
err2024-08-12
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errCameron, Ellen S.; Sanchez, Santiago; Goldman, Nick; Blaxter, Mark L.; Finn, Robert D.
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Ensembl 2024
err2023-11-11
err83
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errHarrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D.
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SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
err2023-10-28
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errSchmidt, Thomas S. B.; Fullam, Anthony; Ferretti, Pamela; Orakov, Askarbek; Maistrenko, Oleksandr M.; Ruscheweyh, Hans-Joachim; Letunic, Ivica; Duan, Yiqian; Van Rossum, Thea; Sunagawa, Shinichi; Mende, Daniel R.; Finn, Robert D.; Kuhn, Michael; Pedro Coelho, Luis; Bork, Peer
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metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data
err2023-10-18
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errZafeiropoulos, Haris; Beracochea, Martin; Ninidakis, Stelios; Exter, Katrina; Potirakis, Antonis; De Moro, Gianluca; Richardson, Lorna; Corre, Erwan; Machado, Joao; Pafilis, Evangelos; Kotoulas, Georgios; Santi, Ioulia; Finn, Robert D.; Cox, Cymon J.; Pavloudi, Christina
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MGnify: the microbiome sequence data analysis resource in 2023
err2022-12-07
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errRichardson, Lorna; Allen, Ben; Baldi, Germana; Beracochea, Martin; Bileschi, Maxwell L.; Burdett, Tony; Burgin, Josephine; Caballero-Perez, Juan; Cochrane, Guy; Colwell, Lucy J.; Curtis, Tom; Escobar-Zepeda, Alejandra; Gurbich, Tatiana A.; Kale, Varsha; Korobeynikov, Anton; Raj, Shriya; Rogers, Alexander B.; Sakharova, Ekaterina; Sanchez, Santiago; Wilkinson, Darren J.; Finn, Robert D.
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Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes
err2022-11-18
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errLin, Qiang; Xavier, Basil Britto; Alako, Blaise T. F.; Mitchell, Alex L.; Rajakani, Sahaya Glingston; Glupczynski, Youri; Finn, Robert D.; Cochrane, Guy; Malhotra-Kumar, Surbhi
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Ensembl 2023
err2022-11-01
err378
errOAAI
errMartin, Fergal J.; Amode, M. Ridwan; Aneja, Alisha; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Bignell, Alexandra; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Charkhchi, Mehrnaz; Cockburn, Alexander; Fiorretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Guijarro, Cristi; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Marques-Coelho, Diego; Marugan, Jose Carlos; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraiva-Agostinho, Nuno; Schuilenburg, Helen; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Stark, William; Steed, Emily; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Szpak, Michal; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Wass, Elizabeth; Willhoft, Natalie; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Tate, John; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Ruffier, Magali; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Howe, Kevin L.; Harrison, Peter W.; Yates, Andrew D.; Flicek, Paul
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Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics
err2022-09-06
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errTous, Nuria; Marcos, Sofia; Boroojeni, Farshad Goodarzi; de Rozas, Ana Perez; Zentek, Juergen; Estonba, Andone; Sandvang, Dorthe; Gilbert, M. Thomas P.; Esteve-Garcia, Enric; Finn, Robert; Alberdi, Antton; Tarradas, Joan
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