Bridget Carragher - Publications, H-index & Citations

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Bridget Carragher

University of California System

71H-index

392Paper Count

2.2WCitation Count

Published Papers 120

Publication Date

Lessons learned from a Kaggle challenge for particle picking in cryo-electron tomography

Nature Methods

IF32.1

2026-08-14

OAAI

Ariana Peck; Joshua Hutchings; Jonathan Schwartz; Yue Yu; Utz H. Ermel; Saugat Kandel; Dari Kimanius; Zhuowen Zhao; Shawn Zheng; Brendan Artley; David List; Sergio A. Silva; Walter Reade; Jeremy Asuncion; Kira Evans; Jessica Gadling; Kandarp Khandwala; Suzette McCanny; Dannielle G. McCarthy; Jun Xi Ni; Janeece Pourroy; Manasa Venkatakrishnan; Zun Shi Wang; David A. Agard; Clinton S. Potter; Bridget Carragher; Kyle I. S. Harrington; Mohammadreza Paraan

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AreTomoLive: automated reconstruction of comprehensively corrected and denoised cryo-electron tomograms in real time and at high throughput

Nature Methods

IF32.1

2026-05-25

OAAI

Ariana Peck; Yue Yu; Mohammadreza Paraan; Dari Kimanius; Utz H. Ermel; Joshua Hutchings; Jonathan Schwartz; Daniel Serwas; Hannah Siems; Norbert S. Hill; Mallak Ali; Julia Peukes; Garrett A. Greenan; Shu-Hsien Sheu; Elizabeth A. Montabana; Bridget Carragher; Clinton S. Potter; David A. Agard; Shawn Zheng

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Evaluating the Volta phase plate for improved tomogram alignment in cryo-electron tomography

IUCrJ

IF3.6

2026-05-01

PREAI

Hutchings, Joshua; Ji, Daniel; Zheng, Shawn; Montabana, Elizabeth A.; Ermel, Utz H.; Peck, Ariana; Schwartz, Jonathan; Woldeyes, Rahel; Paraan, Mohammadreza; Ali, Mallak; Hill, Norbert S.; Siems, Hannah; Serwas, Daniel; Cheng, Anchi; Kimanius, Dari; Agard, David A.; Potter, Clinton S.; Carragher, Bridget; Yu, Yue

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copick: An open dataset interface and toolkit for collaborative annotation and analysis of cryo-electron tomography data

Protein Science

IF5.2

2026-04-17

OAAI

Utz Heinrich Ermel; Jonathan Schwartz; Zhuowen Zhao; Daniel Ji; Ariana Peck; Yue Yu; Mohammadreza Paraan; Bridget Carragher; Achilleas S. Frangakis; Kyle I. S. Harrington

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The CZ CryoET Data Portal: Enabling Collaborative Analysis of Standardized CryoET Data using Machine Learning Methods

Microscopy and Microanalysis

IF3

2025-07-25

OAAI

Utz H Ermel; Anchi Cheng; Jun Xi Ni; Jessica Gadling; Manasa Venkatakrishnan; Kira Evans; Janeece Pourroy; Jeremy Asuncion; Kandarp Khandwala; Zun Shi Wang; Andrew Sweet; Benjamin Nelson; Dannielle McCarthy; Ronen Kalo; Trent Smith; Bryan Chu; Eric M Wang; Richa Agarwal; Bridget Carragher

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Tools and Technologies for Cryo-EM and Cryo-ET

Microscopy and Microanalysis

IF3

2025-07-25

PREAI

Bridget Carragher

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Development of a Dual Laser Phase Plate at CZII

Microscopy and Microanalysis

IF3

2025-07-25

OAAI

Pavel K Olshin; Jessie T Zhang; Dylan Roof; Noeli Paz Soldan; Petar N Petrov; Yue Yu; Jonathan Remis; Anchi Cheng; Hang Cheng; Ken Gross; Elizabeth Montabana; Jeremy Axelrod; Matthew Derstine; David Agard; Holger Müller; Amir Torkaman; Bridget Carragher; Clinton S Potter

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Advancing Particle Identification in Cryo-Electron Tomograms with Deep Learning

Microscopy and Microanalysis

IF3

2025-07-25

OAAI

Jonathan Schwartz; Saugat Kandel; Zhuowen Zhao; Kyle Harrington; Hannah Siems; Clinton S Potter; Daniel Serwas; Bridget Carragher; Shawn Zheng; Dari Kimanius

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A data portal for providing standardized annotations for cryo-electron tomography

NATURE METHODS

IF32.1

2024-10-21

PREAI

Ermel, Utz; Cheng, Anchi; Ni, Jun Xi; Gadling, Jessica; Venkatakrishnan, Manasa; Evans, Kira; Asuncion, Jeremy; Sweet, Andrew; Pourroy, Janeece; Wang, Zun Shi; Khandwala, Kandarp; Nelson, Benjamin; Mccarthy, Dannielle; Wang, Eric M.; Agarwal, Richa; Carragher, Bridget

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Early intermediates in bacterial RNA polymerase promoter melting visualized by time-resolved cryo-electron microscopy

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2024-07-01

PREAI

Saecker, Ruth M.; Mueller, Andreas U.; Malone, Brandon; Chen, James; Budell, William C.; Dandey, Venkata P.; Maruthi, Kashyap; Mendez, Joshua H.; Molina, Nina; Eng, Edward T.; Yen, Laura Y.; Potter, Clinton S.; Carragher, Bridget; Darst, Seth A.

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Automated pipelines for rapid evaluation during cryoEM data acquisition

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2023-12-01

PREAI

Mendez, Joshua H.; Chua, Eugene Y. D.; Paraan, Mohammadreza; Potter, Clinton S.; Carragher, Bridget

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Mimotope discovery as a tool to design a vaccine against Zika and dengue viruses

BIOTECHNOLOGY AND BIOENGINEERING

IF3.6

2023-04-14

OAAI

Cuevas-Juarez, Esmeralda; Linan-Torres, Arturo; Hernandez, Carolina; Kopylov, Mykhailo; Potter, Clint S.; Carragher, Bridget; Ramirez, Octavio T.; Palomares, Laura A.

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Measuring the effects of ice thickness on resolution in single particle cryo-EM

JOURNAL OF STRUCTURAL BIOLOGY-X

IF5.1

2023-01-01

OAAI

Neselu, Kasahun; Wang, Bing; Rice, William J.; Potter, Clinton S.; Carragher, Bridget; Chua, Eugene Y. D.

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Smart data collection for CryoEM

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2022-12-01

PREAI

Bepler, Tristan; Borst, Andrew J.; Bouvette, Jonathan; Cannone, Giuseppe; Chen, Songye; Cheng, Anchi; Cheng, Ao; Fan, Quanfu; Grollios, Fanis; Gupt, Harshit; Gupta, Meghna; Humphreys, Theo; Kim, Paul T.; Kuang, Huihui; Li, Yilai; Noble, Alex J.; Punjani, Ali; Rice, William J.; Sorzano, Carlos Oscar S.; Stagg, Scott M.; Strauss, Joshua; Yu, Lingbo; Carragher, Bridget; Potter, Clinton S.

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Better, Faster, Cheaper: Recent Advances in Cryo-Electron Microscopy

ANNUAL REVIEW OF BIOCHEMISTRY

IF20.5

2022-06-21

OAAI

Chua, Eugene Y. D.; Mendez, Joshua H.; Rapp, Micah; Ilca, Serban L.; Tan, Yong Zi; Maruthi, Kashyap; Kuang, Huihui; Zimanyi, Christina M.; Cheng, Anchi; Eng, Edward T.; Noble, Alex J.; Potter, Clinton S.; Carragher, Bridget

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Waffle Method: A general and flexible approach for improving throughput in FIB-milling

NATURE COMMUNICATIONS

IF15.7

2022-04-06

OAAI

Kelley, Kotaro; Raczkowski, Ashleigh M.; Klykov, Oleg; Jaroenlak, Pattana; Bobe, Daija; Kopylov, Mykhailo; Eng, Edward T.; Bhabha, Gira; Potter, Clinton S.; Carragher, Bridget; Noble, Alex J.

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Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition

NATURE COMMUNICATIONS

IF15.7

2022-04-05

OAAI

Liang, Wenguang G.; Wijaya, Juwina; Wei, Hui; Noble, Alex J.; Mancl, Jordan M.; Mo, Swansea; Lee, David; King, John V. Lin; Pan, Man; Liu, Chang; Koehler, Carla M.; Zhao, Minglei; Potter, Clinton S.; Carragher, Bridget; Li, Sheng; Tang, Wei-Jen

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Broadening access to cryoEM through centralized facilities

TRENDS IN BIOCHEMICAL SCIENCES

IF11

2022-02-01

OAAI

Zimanyi, Christina M.; Kopylov, Mykhailo; Potter, Clinton S.; Carragher, Bridget; Eng, Edward T.

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Label-free visual proteomics: Coupling MS- and EM-based approaches in structural biology

MOLECULAR CELL

IF16.6

2022-01-01

OAAI

Klykov, Oleg; Kopylov, Mykhailo; Carragher, Bridget; Heck, Albert J. R.; Noble, Alex J.; Scheltema, Richard A.

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Symmetric activation and modulation of the human calcium-sensing receptor

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-12-16

OAAI

Park, Jinseo; Zuo, Hao; Frangaj, Aurel; Fu, Ziao; Yen, Laura Y.; Zhang, Zhening; Mosyak, Lidia; Slavkovich, Vesna N.; Liu, Jonathan; Ray, Kimberly M.; Cao, Baohua; Vallese, Francesca; Geng, Yong; Chen, Shaoxia; Grassucci, Robert; Dandey, Venkata P.; Tan, Yong Zi; Eng, Edward; Lee, Yeji; Kloss, Brian; Liu, Zheng; Hendrickson, Wayne A.; Potter, Clinton S.; Carragher, Bridget; Graziano, Joseph; Conigrave, Arthur D.; Frank, Joachim; Clarke, Oliver B.; Fan, Qing R.

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Research Directions