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A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival Abassah-Oppong, Samuel; Zoia, Matteo; Mannion, Brandon J.; Rouco, Raquel; Tissieres, Virginie; Spurrell, Cailyn H.; Roland, Virginia; Darbellay, Fabrice; Itum, Anja; Gamart, Julie; Festa-Daroux, Tabitha A.; Sullivan, Carly S.; Kosicki, Michael; Rodriguez-Carballo, Eddie; Fukuda-Yuzawa, Yoko; Hunter, Riana D.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Tran, Stella; Akiyama, Jennifer A.; Dickel, Diane E.; Lopez-Rios, Javier; Barozzi, Iros; Andrey, Guillaume; Visel, Axel; Pennacchio, Len A.; Cobb, John; Osterwalder, Marco Share Save
A Functional Survey of the Regulatory Landscape of Estrogen Receptor-Positive Breast Cancer Evolution Barozzi, Iros; Slaven, Neil; Canale, Eleonora; Lopes, Rui; Barbosa, Ines Amorim Monteiro; Bleu, Melusine; Ivanoiu, Diana; Pacini, Claudia; Mensa, Emanuela; Chambers, Alfie; Bravaccini, Sara; Ravaioli, Sara; Gyorffy, Balazs; Dieci, Maria Vittoria; Pruneri, Giancarlo; Galli, Giorgio Giacomo; Magnani, Luca Share Save
Protocol-defined biomarker analysis in the PALLAS (AFT-05) adjuvant trial: Genomic subtype derived from RNA sequencing of HR+/HER2-early breast cancer Stover, Daniel; Hlauschek, Dominik; Mayer, Erica; Symmans, W. Fraser; Watson, Mark; Barozzi, Iros; Filipits, Martin; Ballman, Karla; Bellet-Ezquerra, Meritxell; Balko, Justin; Rubovszky, Gabor; Zdenkowski, Nicholas; Brufsky, Adam; Steger, Guenther; Isaacs, Claudine; Loibl, Sibylle; Henao, Fernando; Regan, Meredith; Liu, Yuan; Fesl, Christian; O'Brien, Patrick; DeMichele, Angela; Gnant, Michael; Metzger, Otto Share Save
Long-term Multimodal Recording Reveals Epigenetic Adaptation Routes in Dormant Breast Cancer Cells Rosano, Dalia; Sofyali, Emre; Dhiman, Heena; Ghirardi, Chiara; Ivanoiu, Diana; Heide, Timon; Vingiani, Andrea; Bertolotti, Alessia; Pruneri, Giancarlo; Canale, Eleonora; Dewhurst, Hannah F.; Saha, Debjani; Slaven, Neil; Barozzi, Iros; Li, Tong; Zemlyanskiy, Grigory; Phillips, Henry; James, Chela; Gyorffy, Balazs; Lynn, Claire; Cresswell, George D.; Rehman, Farah; Noberini, Roberta; Bonaldi, Tiziana; Sottoriva, Andrea; Magnani, Luca Share Save
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Increased enhancer-promoter interactions during developmental enhancer activation in mammals Chen, Zhuoxin; Snetkova, Valentina; Bower, Grace; Jacinto, Sandra; Clock, Benjamin; Dizehchi, Atrin; Barozzi, Iros; Mannion, Brandon J.; Alcaina-Caro, Ana; Lopez-Rios, Javier; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Kvon, Evgeny Z. Share Save
Dynamic enhancer landscapes in human craniofacial development Rajderkar, Sudha Sunil; Paraiso, Kitt; Amaral, Maria Luisa; Kosicki, Michael; Cook, Laura E.; Darbellay, Fabrice; Spurrell, Cailyn H.; Osterwalder, Marco; Zhu, Yiwen; Wu, Han; Afzal, Sarah Yasmeen; Blow, Matthew J.; Kelman, Guy; Barozzi, Iros; Fukuda-Yuzawa, Yoko; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Hunter, Riana D.; von Maydell, Kianna; Wang, Allen; Lin, Lin; Preissl, Sebastian; Lisgo, Steven; Ren, Bing; Dickel, Diane E.; Pennacchio, Len A.; Visel, Axel Share Save
Logical design of synthetic cis-regulatory DNA for genetic tracing of cell identities and state changes Company, Carlos; Schmitt, Matthias Juergen; Dramaretska, Yuliia; Serresi, Michela; Kertalli, Sonia; Jiang, Ben; Yin, Jiang-An; Aguzzi, Adriano; Barozzi, Iros; Gargiulo, Gaetano Share Save
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A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2 Losa, Marta; Barozzi, Iros; Osterwalder, Marco; Hermosilla-Aguayo, Viviana; Morabito, Angela; Chacon, Brandon H.; Zarrineh, Peyman; Girdziusaite, Ausra; Benazet, Jean Denis; Zhu, Jianjian; Mackem, Susan; Capellini, Terence D.; Dickel, Diane; Bobola, Nicoletta; Zuniga, Aimee; Visel, Axel; Zeller, Rolf; Selleri, Licia Share Save
MYC determines lineage commitment in KRAS-driven primary liver cancer development D'Artista, Luana; Moschopoulou, Athina Anastasia; Barozzi, Iros; Craig, Amanda J.; Seehawer, Marco; Herrmann, Lea; Minnich, Martina; Kang, Tae-Won; Rist, Elke; Henning, Melanie; Klotz, Sabrina; Heinzmann, Florian; Harbig, Jule; Sipos, Bence; Longerich, Thomas; Eilers, Martin; Dauch, Daniel; Zuber, Johannes; Wang, Xin Wei; Zender, Lars Share Save
Topologically associating domain boundaries are required for normal genome function Rajderkar, Sudha; Barozzi, Iros; Zhu, Yiwen; Hu, Rong; Zhang, Yanxiao; Li, Bin; Caro, Ana Alcaina; Fukuda-Yuzawa, Yoko; Kelman, Guy; Akeza, Adyam; Blow, Matthew J.; Pham, Quan; Harrington, Anne N.; Godoy, Janeth; Meky, Eman M.; von Maydell, Kianna; Hunter, Riana D.; Akiyama, Jennifer A.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Afzal, Veena; Tran, Stella; Lopez-Rios, Javier; Talkowski, Michael E.; Lloyd, K. C. Kent; Ren, Bing; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A. Share Save
Genome-wide fetalization of enhancer architecture in heart disease Spurrell, Cailyn H.; Barozzi, Iros; Kosicki, Michael; Mannion, Brandon J.; Blow, Matthew J.; Fukuda-Yuzawa, Yoko; Slaven, Neil; Afzal, Sarah Y.; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Lee, Elizabeth A.; Garvin, Tyler H.; Pham, Quan T.; Kronshage, Anne N.; Lisgo, Steven; Bristow, James; Cappola, Thomas P.; Morley, Michael P.; Margulies, Kenneth B.; Pennacchio, Len A.; Dickel, Diane E.; Visel, Axel Share Save
Transcriptional network orchestrating regional patterning of cortical progenitors Ypsilanti, Athena R.; Pattabiraman, Kartik; Catta-Preta, Rinaldo; Golonzhka, Olga; Lindtner, Susan; Tang, Ke; Jones, Ian R.; Abnousi, Armen; Juric, Ivan; Hu, Ming; Shen, Yin; Dickel, Diane E.; Visel, Axel; Pennachio, Len A.; Hawrylycz, Michael; Thompson, Carol L.; Zeng, Hongkui; Barozzi, Iros; Nord, Alex S.; Rubenstein, John L. Share Save
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A first exon termination checkpoint preferentially suppresses extragenic transcription Austenaa, Liv M. I.; Piccolo, Viviana; Russo, Marta; Prosperini, Elena; Polletti, Sara; Polizzese, Danilo; Ghisletti, Serena; Barozzi, Iros; Diaferia, Giuseppe R.; Natoli, Gioacchino Share Save
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