Mark D. Robinson - Publications, H-index & Citations

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Mark D. Robinson

university of zurich

82H-index

464Paper Count

9.2WCitation Count

Published Papers 110

Publication Date

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering

Nature Methods

IF32.1

2026-08-24

OAAI

Jieran Sun; Kirti Biharie; Peiying Cai; Niklas Müller-Bötticher; Paul Kiessling; Meghan A. Turner; Søren Helweg Dam; Florian Heyl; Sarusan Kathirchelvan; Martin Emons; Samuel Gunz; Sven Twardziok; Amin El-Heliebi; Martin Zacharias; Roland Eils; Marcel Reinders; Raphael Gottardo; Christoph Kuppe; Brian Long; Ahmed Mahfouz; Mark D. Robinson; Naveed Ishaque

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Convergence and divergence of DNA methylation and gene expression patterns in neopolyploid Arabidopsis kamchatica

Nature Communications

IF15.7

2026-06-30

OAAI

Stefan Milosavljevic; Dario Copetti; Kenji Yip Tong; Aki Morishima; Jun Sese; Mark D. Robinson; Kentaro K. Shimizu; Rie Shimizu-Inatsugi

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RoCK and ROI: single-cell transcriptomics with multiplexed enrichment of selected transcripts and region-specific sequencing

Nature Communications

IF15.7

2025-12-10

OAAI

Giulia Moro; Izaskun Mallona; Malwine J. Barz; Joël Maillard; Michael David Brügger; Hassan Fazilaty; Quentin Szabo; Tomas Valenta; Kristina Handler; Fiona Kerlin; Lorenz Bastian; Claudia D. Baldus; Andreas E. Moor; Robert Zinzen; Mark D. Robinson; Erich Brunner; Konrad Basler

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Protocol to investigate fibroblastic reticular cell-immune cell interaction in human lung cancer

STAR PROTOCOLS

IF1.3

2025-12-01

OAAI

Papadopoulou, Chrysa; Cheng, Hung-Wei; Lutge, Almut; Lutge, Mechthild; De Martin, Angelina; Robinson, Mark D.; Ludewig, Burkhard; Onder, Lucas

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Building a continuous benchmarking ecosystem in bioinformatics

PLOS COMPUTATIONAL BIOLOGY

IF3.6

2025-11-14

PREAI

Mallona, Izaskun; Soneson, Charlotte; Carrillo, Ben; Lutge, Almut; Incicau, Daniel; Gerber, Reto; Sonrel, Anthony; Robinson, Mark D.

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Transcriptomics- and 3D imaging-based characterization of the lymphatic vasculature in human skin

JOURNAL OF EXPERIMENTAL MEDICINE

IF10.6

2025-11-04

PREAI

Bauer, Aline; Zambounis, Lito; Kritikos, Ioannis; Lutge, Almut; Sabine, Amelie; Heron, Coraline; Petkova, Milena; Giampietro, Costanza; Blatter, Katharina; Bianco, Salvatore Daniele; Gschwend, Daniel; Restivo, Gaetana; Proulx, Steven T.; Levesque, Mitchell P.; Lindenblatt, Nicole; Mazza, Edoardo; Detmar, Michael; Gousopoulos, Epameinondas; Robinson, Mark D.; Petrova, Tatiana V.; Halin, Cornelia

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Multi-omic profiling reveals key drivers of response to dual CTLA-4/PD-1 immunotherapy in mRCC

JOURNAL OF IMMUNOLOGY

IF3.4

2025-11-01

PREAI

Guglietta, Silvia; Sonrel, Antony; Orjuela, Stephany; Baerenwald, Anne; Monaco, Gianni; Griner, Jake; Li, Lixia; Peterson, Vanessa; Hardiman, Gary; Bao, Riyue; Stenner, Frank; Robinson, Mark D.; Lauebeli, Heinz; Krieg, Carsten

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Bridging the molecular resolution gap: integrating imaging mass cytometry with mass spectrometry for deeper insights into inflammation

JOURNAL OF IMMUNOLOGY

IF3.4

2025-11-01

PREAI

Krieg, Carsten; Griner, Jake; Gerber, Reto; Guttierez-Reyes, Cristian; Goli, Mona; Lewin, David; Mechref, Yehia; Robinson, Mark; Guglietta, Silvia

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On metrics for subpopulation detection in single-cell and spatial omics data

NUCLEIC ACIDS RESEARCH

IF13.1

2025-10-14

PREAI

Luo, Siyuan; Germain, Pierre-Luc; von Meyenn, Ferdinand; Robinson, Mark D.

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Harnessing the potential of spatial statistics for spatial omics data with pasta

NUCLEIC ACIDS RESEARCH

IF13.1

2025-09-23

OAAI

Emons, Martin; Gunz, Samuel; Crowell, Helena L.; Mallona, Izaskun; Kuehl, Malte; Furrer, Reinhard; Robinson, Mark D.

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Rbm8a deficiency causes hematopoietic defects by modulating Wnt/PCP signaling

Developmental Biology

IF2.1

2025-09-02

OAAI

Agnese Kocere; Elena Chiavacci; Charlotte Soneson; Seth T. Jacobson; Emma N. Harrison; Kevin Manuel Méndez-Acevedo; Jacalyn S. MacGowan; Harrison H. Wells; Max S. Hiltabidle; Azhwar Raghunath; Jordan A. Shavit; Daniela Panáková; Margot L.K. Williams; Mark D. Robinson; Christian Mosimann; Alexa Burger

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Fibroblastic reticular cells form reactive myeloid cell niches in human lymph nodes

SCIENCE IMMUNOLOGY

IF16.3

2025-05-02

PREAI

Lutge, Mechthild; Kurz, Lisa; Stanossek, Yves; Meili, Samuel; Cheng, Hung-Wei; De Martin, Angelina; Brandstadter, Joshua; Maillard, Ivan; Robinson, Mark D.; Stoeckli, Sandro J.; Pikor, Natalia B.; Onder, Lucas; Ludewig, Burkhard

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CELLS

IF5.2

2024-08-21

OAAI

Signal, Brandon; Phipps, Andrew J.; Giles, Katherine A.; Huskins, Shannon N.; Mercer, Timothy R.; Robinson, Mark D.; Woodhouse, Adele; Taberlay, Phillippa C.

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Benchmarking computational methods for single-cell chromatin data analysis

GENOME BIOLOGY

IF9.4

2024-08-16

OAAI

Luo, Siyuan; Germain, Pierre-Luc; Robinson, Mark D.; von Meyenn, Ferdinand

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Divergent evolution of male-determining loci on proto-Y chromosomes of the housefly

NATURE COMMUNICATIONS

IF15.7

2024-07-16

OAAI

Li, Xuan; Visser, Sander; Son, Jae Hak; Geuverink, Elzemiek; Kivanc, Ece Naz; Wu, Yanli; Schmeing, Stephan; Pippel, Martin; Anvar, Seyed Yahya; Schenkel, Martijn A.; Marec, Frantisek; Robinson, Mark D.; Meisel, Richard P.; Wimmer, Ernst A.; van de Zande, Louis; Bopp, Daniel; Beukeboom, Leo W.

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Activation of S1P/SK2 pathway in classical monocytes enhances anti-PD-1 immunotherapy

JOURNAL OF IMMUNOLOGY

IF3.4

2024-05-01

PREAI

Krieg, Carsten; Ball, Lauren; Orgetmen, Besim; Hardiman, Gari; Gan, Wenjian; Robinson, Mark; Guglietta, Silvia

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RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing

NATURE COMMUNICATIONS

IF15.7

2023-11-07

OAAI

Moursy, Ahmed; Clery, Antoine; Gerhardy, Stefan; Betz, Katharina M.; Rao, Sanjana; Mazur, Jaroslaw; Campagne, Sebastien; Beusch, Irene; Duszczyk, Malgorzata M.; Robinson, Mark D.; Panse, Vikram Govind; Allain, Frederic H. -T.

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Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions

BMC CANCER

IF3.4

2023-10-18

OAAI

Sajibu, Sija; Sonder, Emanuel; Tiwari, Amit; Orjuela, Stephany; Parker, Hannah R.; Frans, Olivier The; Gubler, Christoph; Marra, Giancarlo; Robinson, Mark D.

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Conserved stromal-immune cell circuits secure B cell homeostasis and function

NATURE IMMUNOLOGY

IF27.6

2023-05-18

OAAI

Lutge, Mechthild; De Martin, Angelina; Gil-Cruz, Cristina; Perez-Shibayama, Christian; Stanossek, Yves; Onder, Lucas; Cheng, Hung-Wei; Kurz, Lisa; Cadosch, Nadine; Soneson, Charlotte; Robinson, Mark D.; Stoeckli, Sandro J.; Ludewig, Burkhard; Pikor, Natalia B.

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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

GENOME BIOLOGY

IF9.4

2023-05-17

OAAI

Sonrel, Anthony; Luetge, Almut; Soneson, Charlotte; Mallona, Izaskun; Germain, Pierre-Luc; Knyazev, Sergey; Gilis, Jeroen; Gerber, Reto; Seurinck, Ruth; Paul, Dominique; Sonder, Emanuel; Crowell, Helena L. L.; Fanaswala, Imran; Al-Ajami, Ahmad; Heidari, Elyas; Schmeing, Stephan; Milosavljevic, Stefan; Saeys, Yvan; Mangul, Serghei; Robinson, Mark D.

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Research Directions