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Spotiphy enables single-cell spatial whole transcriptomics across an entire section Yang, Jiyuan; Zheng, Ziqian; Jiao, Yun; Yu, Kaiwen; Bhatara, Sheetal; Yang, Xu; Natarajan, Sivaraman; Zhang, Jiahui; Pan, Qingfei; Easton, John; Yan, Koon-Kiu; Yu, Jiyang Share Save
BMP signaling determines neuroblastoma sensitivity to retinoic acid by directing cell fate Pan, Min; Zhang, Yinwen; Wright, William C.; Lee, Hyeong-Min; Chapple, Richard H.; Liu, Xueying; Low, Jonathan; Currier, Duane; Loughran, Allister J.; Dyer, Michael A.; Pruett, Shondra M.; Freeman, Burgess, III; Chen, Taosheng; Abraham, Brian J.; Stewart, Elizabeth; Easton, John; Geeleher, Paul Share Save
An integrated single-cell RNA-seq map of human neuroblastoma tumors and preclinical models uncovers divergent mesenchymal-like gene expression programs Chapple, Richard H.; Liu, Xueying; Natarajan, Sivaraman; Alexander, Margaret I. M.; Kim, Yuna; Patel, Anand G.; LaFlamme, Christy W.; Pan, Min; Wright, William C.; Lee, Hyeong-Min; Zhang, Yinwen; Lu, Meifen; Koo, Selene C.; Long, Courtney; Harper, John; Savage, Chandra; Johnson, Melissa D.; Confer, Thomas; Akers, Walter J.; Dyer, Michael A.; Sheppard, Heather; Easton, John; Geeleher, Paul Share Save
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An integrated single-cell RNA-seq map of human neuroblastoma tumors and preclinical models uncovers divergent mesenchymal-like gene expression programs Chapple, Richard H.; Liu, Xueying; Natarajan, Sivaraman; Alexander, Margaret I. M.; Kim, Yuna; Patel, Anand G.; LaFlamme, Christy W.; Pan, Min; Wright, William C.; Lee, Hyeong-Min; Zhang, Yinwen; Lu, Meifen; Koo, Selene C.; Long, Courtney; Harper, John; Savage, Chandra; Johnson, Melissa D.; Confer, Thomas; Akers, Walter J.; Dyer, Michael A.; Sheppard, Heather; Easton, John; Geeleher, Paul Share Save
Associations between mitochondrial copy number, exercise capacity, physiologic cost of walking, and cardiac strain in young adult survivors of childhood cancer Berkman, Amy M.; Goodenough, Chelsea G.; Durakiewicz, Paul; Howell, Carrie R.; Wang, Zhaoming; Easton, John; Mulder, Heather L.; Armstrong, Gregory T.; Hudson, Melissa M.; Kundu, Mondira; Ness, Kirsten K. Share Save
A novel unsupervised machine learning model applied to neuroblastoma single-cell RNA-seq data reveals a drug-induced mesenchymal-like gene expression program Chapple, Rich; Liu, Xueying; Natarajan, Sivaraman; Alexander, Margaret I.; Kim, Yuna; Patel, Anand; LaFlamme, Christy W.; Pan, Min; Wright, William C.; Lee, Hyeong-Min; Zhang, Yinwen; Lu, Meifen; Koo, Selene C.; Long, Courtney; Harper, John; Savage, Chandra; Johnson, Melissa D.; Confer, Thomas; Akers, Walter J.; Dyer, Michael A.; Sheppard, Heather; Easton, John; Geeleher, Paul Share Save
Epigenetic inflammation scores for C-Reactive protein and interleukin-6 associate with adverse cardiometabolic and cardiac outcomes among survivors of childhood cancer Dong, Qian; Chen, Yan; Zhang, Xijun; Easton, John; Mulder, Heather; Walker, Emily; Neale, Geoffrey; Shelton, Kyla; Dixon, Stephanie B.; Zhang, Jinghui; Armstrong, Gregory T.; Hudson, Melissa M.; Ness, Kirsten K.; Wang, Zhaoming Share Save
Pleiotropic GATA3 locus is associated with multiple childhood cancers: harnessing the existing data from the St. Jude Lifetime Cohort and the Childhood Cancer Survivor Study for genetic etiology research Chen, Cheng; Zhang, Xijun; Dong, Qian; Mulder, Heather L.; Easton, John; Ma, Xiaotu; Zhang, Jinghui; Yang, Jun; Nichols, Kim E.; Armstong, Gregory T.; Ness, Kirsten K.; Hudson, Melissa M.; Wang, Hui; Chatterjee, Nilanjan; Im, Cindy; Wang, Zhaoming Share Save
SJPedPanel: A pan-cancer gene panel for childhood malignancies Kolekar, Pandurang; Balagopal, Vidya; Dong, Li; Liu, Yanling; Foy, Scott; Quang Tran; Mulder, Heather; Huskey, Anna L. W.; Plyler, Emily; Liang, Zhikai; Ma, Jingqun; Nakitandwe, Joy; Gu, Jiali; Maciaszek, Jamie; Payne-Turner, Debbie; Mallampati, Saradhi; Wang, Lu; Easton, John; Klco, Jeffery M.; Ma, Xiaotu Share Save
DNA methylation based aging biomarkers mediate the association between patient-reported symptoms and all-cause late-mortality: A report from the St. Jude Lifetime Cohort Li, Qian; Pan, Yue; Zhang, Xijun; Plonski, Noel-Marie; Chen, G.; Dong, Qian; Shelton, Kyla; Easton, John; Mulder, Heather; Zhang, Jinghui; Neale, Geoffrey; Walker, Emily; Srivastava, Deo Kumar; Armstrong, Greg T.; Ness, Kirsten; Huang, I-Chan; Wang, Zhaoming Share Save
Increased mosaic chromosomal alterations among survivors of childhood acute myeloid leukemia Zhang, Xijun; Qin, Na; Dong, Qian; Chen, Cheng; Easton, John; Mulder, Heather; Chen, Xiang; Shelton, Kyla; Im, Cindy; Yasui, Yutaka; Armstrong, Greg; Ness, Kirsten K.; Hudson, Melissa M.; Auer, Paul; Zhang, Jinghui; Wang, Zhaoming Share Save
Seq2Karyotype (S2K): A method for deconvoluting heterogeneity of copy number alterations using single-sample whole-genome sequencing data Pu, Limeng; Szlachta, Karol; Valentine, Virginia; Chen, Xiaolong; Wang, Jian; Kennetz, Dennis; Putnam, Daniel; Natarajan, Sivaraman; Dong, Li; Look, Thomas; Wlodarski, Marcin; Wang, Lu; Burden, Steven; Easton, John; Chen, Xiang; Zhang, Jinghui Share Save
Health-Related quality of life and DNA methylation-based aging biomarkers among survivors of childhood cancer: Results from the St. Jude Lifetime Cohort Plonski, Noel-Marie; Pan, Yue; Chen, Cheng; Dong, Qian; Zhang, Xijun; Song, Nan; Shelton, Kyla; Easton, John; Mulder, Heather; Zhang, Jinghui; Neale, Geoffrey; Walker, Emily; Wang, Hui; Webster, Rachel; Brinkman, Tara; Krull, Kevin R.; Armstrong, Gregory T.; Ness, Kirsten K.; Hudson, Melissa M.; Li, Qin; Huang, I-Chan; Wang, Zhaoming Share Save
BMP signaling determines neuroblastoma cell fate and sensitivity to retinoic acid Pan, Min; Zhang, Yinwen; Wright, William C.; Lee, Hyeong-Min; Chapple, Richard H.; Liu, Xueying; Low, Jonathan; Currier, Duane; Loughran, Allister J.; Dyer, Dyer A.; Pruett, Shondra M.; Freeman, Burgess; Chen, Taosheng; Abraham, Brian J.; Stewart, Elizabeth; Easton, John; Geeleher, Paul Share Save
Health-related quality of life and DNA methylation-based aging biomarkers among survivors of childhood cancer Plonski, Noel-Marie; Pan, Yue; Chen, Cheng; Dong, Qian; Zhang, Xijun; Song, Nan; Shelton, Kyla; Easton, John; Mulder, Heather; Zhang, Jinghui; Neale, Geoffrey; Walker, Emily; Wang, Hui; Webster, Rachel; Brinkman, Tara; Krull, Kevin R.; Armstrong, Gregory T.; Ness, Kirsten K.; Hudson, Melissa M.; Li, Qian; Huang, I-Chan; Wang, Zhaoming Share Save
Integrome signatures of lentiviral gene therapy for SCID-X1 patients Yan, Koon-Kiu; Condori, Jose; Ma, Zhijun; Metais, Jean-Yves; Ju, Bensheng; Ding, Liang; Dhungana, Yogesh; Palmer, Lance E.; Langfitt, Deanna M.; Ferrara, Francesca; Throm, Robert; Shi, Hao; Risch, Isabel; Bhatara, Sheetal; Shaner, Bridget; Lockey, Timothy D.; Talleur, Aimee C.; Easton, John; Meagher, Michael M.; Puck, Jennifer M.; Cowan, Morton J.; Zhou, Sheng; Mamcarz, Ewelina; Gottschalk, Stephen; Yu, Jiyang Share Save
Genome-wide mapping of cancer dependency genes and genetic modifiers of chemotherapy in high-risk hepatoblastoma Fang, Jie; Singh, Shivendra; Cheng, Changde; Natarajan, Sivaraman; Sheppard, Heather; Abu-Zaid, Ahmed; Durbin, Adam D.; Lee, Ha Won; Wu, Qiong; Steele, Jacob; Connelly, Jon P.; Jin, Hongjian; Chen, Wenan; Fan, Yiping; Pruett-Miller, Shondra M.; Rehg, Jerold E.; Koo, Selene C.; Santiago, Teresa; Emmons, Joseph; Cairo, Stefano; Wang, Ruoning; Glazer, Evan S.; Murphy, Andrew J.; Chen, Taosheng; Davidoff, Andrew M.; Armengol, Carolina; Easton, John; Chen, Xiang; Yang, Jun Share Save
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