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Manfred Claassen

Eberhard Karls University of Tubingen

31H-index
191Paper Count
7.1KCitation Count
Published Papers 56
Publication Date
SHIELD: A weakly supervised graph attention neural network for decoding disease-relevant cell-cell interactions
err2026-05-22
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errVivek Sehra; Benjamin Ruf; Gabriel Duval; Sepideh Babaei; Manfred Claassen
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CAR-adapted PIK3CD base editing enhances T cell anti-tumor potency
err2026-01-06
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errPhilip Bucher; Nadine Brückner; Jule Kortendieck; Melanie Grimm; Jan T. Schleicher; Karlotta Bartels; Steffen Hardy; Martina Rausch; Hannah Wurzer; Meike Thiemann; Celina May; Mara Mitstorfer; Dennis Letzgus; Julia Quach; Carolin Schneider; Denis A. Ispan; Irene Gonzalez-Menendez; Nayan Jain; Yu-Jui Ho; Jiangqing Chen; Francisco J. Sánchez-Rivera; Jie Sun; Leticia Quintanilla-Martinez; Christoph Trautwein; Bettina Weigelin; Manfred Claassen; Michel Sadelain; Judith Feucht; Josef Leibold
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DGP-LVM: Derivative Gaussian process latent variable models
err2025-10-01
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errMukherjee, Soham; Claassen, Manfred; Buerkner, Paul-Christian
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IDENTIFICATION OF BCL FAMILY MEMBERS AS MODULATORS OF REGORAFENIB EFFICACY IN EXPERIMENTAL GLIOMA
err2025-10-01
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errHaeusser, L. A.; Becker, H.; Kuhlburger, L.; Zago, M.; Walter, B.; Tsiami, F.; Erdmann, S.; Trampert, J.; Surender, S.; Stahl, A.; Templin, M.; Wegner, E.; Schmidt, T.; Schmees, C.; Casadei, N.; Sevenich, L.; Claassen, M.; Nahnsen, S.; Beck, S.; Merk, D. J.; Tabatabai, G.
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Exploratory trajectory inference reveals convergent lineages for CD8 T cells in chronic LCMV infection
err2025-09-19
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errSchleicher, Jan T.; Gupta, Revant; Cerletti, Dario; Sandu, Ioana; Oxenius, Annette; Claassen, Manfred
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Actionable heterogeneity of hepatocellular carcinoma therapy-induced senescence
err2025-05-15
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errEngels, Pujan; Szolek, Andras; Hoerner, Sebastian; Syrigos, Georgios Vavouras; Hebbel, Kim; Schmidtke, Michelle; Zhou, Min; Mateo-Tortola, Maria; Schoenfeld, Caroline; Stefanczyk, Sylwia Anna; Wolter, Katharina; Babaei, Sepideh; Schindler, Michael; Claassen, Manfred; Dauch, Daniel; Zender, Lars; Tapia-Abellan, Ana; Weber, Alexander N. R.
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Functional screening reveals genetic dependencies and diverging cell cycle control in atypical teratoid rhabdoid tumors
err2024-12-02
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errMerk, Daniel J.; Tsiami, Foteini; Hirsch, Sophie; Walter, Bianca; Haeusser, Lara A.; Maile, Jens D.; Stahl, Aaron; Jarboui, Mohamed A.; Lechado-Terradas, Anna; Klose, Franziska; Babaei, Sepideh; Admard, Jakob; Casadei, Nicolas; Roggia, Cristiana; Spohn, Michael; Schittenhelm, Jens; Singer, Stephan; Schueller, Ulrich; Piccioni, Federica; Persky, Nicole S.; Claassen, Manfred; Tatagiba, Marcos; Kahle, Philipp J.; Root, David E.; Templin, Markus; Tabatabai, Ghazaleh
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Assessing AI Awareness and Identifying Essential Competencies: Insights From Key Stakeholders in Integrating AI Into Medical Education
err2024-06-12
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errMoldt, Julia -Astrid; Festl-Wietek, Teresa; Fuhl, Wolfgang; Zabel, Susanne; Claassen, Manfred; Wagner, Samuel; Nieselt, Kay; Herrmann-Werner, Anne
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High-dimensional in situ proteomics imaging to assess γδ T cells in spatial biology
err2024-01-29
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PREAI
errHerold, Nicola; Bruhns, Matthias; Babaei, Sepideh; Spreuer, Janine; Castagna, Arianna; Yurttas, Can; Scheuermann, Sophia; Seitz, Christian; Ruf, Benjamin; Koenigsrainer, Alfred; Jurmeister, Philipp; Loeffler, Markus W.; Claassen, Manfred; Wistuba-Hamprecht, Kilian
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Expansion of extrafollicular B and T cell subsets in childhood-onset systemic lupus erythematosus
err2023-10-27
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errBaxter, Ryan M.; Wang, Christine S.; Garcia-Perez, Josselyn E.; Kong, Daniel S.; Coleman, Brianne M.; Larchenko, Valentyna; Schuyler, Ronald P.; Jackson, Conner; Ghosh, Tusharkanti; Rudra, Pratyaydipta; Paul, Debdas; Claassen, Manfred; Rochford, Rosemary; Cambier, John C.; Ghosh, Debashis; Cooper, Jennifer C.; Smith, Mia J.; Hsieh, Elena W. Y.
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S3-CIMA: Supervised spatial single-cell image analysis for identifying disease-associated cell-type compositions in tissue
err2023-09-01
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errBabaei, Sepideh; Christ, Jonathan; Sehra, Vivek; Makky, Ahmad; Zidane, Mohammed; Wistuba-Hamprecht, Kilian; Schuerch, Christian; Claassen, Manfred
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Intestinal B cells license metabolic T-cell activation in NASH microbiota/antigen-independently and contribute to fibrosis by IgA-FcR signalling
err2023-08-01
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errKotsiliti, Elena; Leone, Valentina; Schuehle, Svenja; Govaere, Olivier; Li, Hai; Wolf, Monika J.; Horvatic, Helena; Bierwirth, Sandra; Hundertmark, Jana; Inverso, Donato; Zizmare, Laimdota; Sarusi-Portuguez, Avital; Gupta, Revant; O'Connor, Tracy; Giannou, Anastasios D.; Shiri, Ahmad Mustafa; Schlesinger, Yehuda; Beccaria, Maria Garcia; Rennert, Charlotte; Pfister, Dominik; Oellinger, Rupert; Gadjalova, Iana; Ramadori, Pierluigi; Rahbari, Mohammad; Rahbari, Nuh; Healy, Marc E.; Fernandez-Vaquero, Mirian; Yahoo, Neda; Janzen, Jakob; Singh, Indrabahadur; Fan, Chaofan; Liu, Xinyuan; Rau, Monika; Feuchtenberger, Martin; Schwaneck, Eva; Wallace, Sebastian J.; Cockell, Simon; Wilson-Kanamori, John; Ramachandran, Prakash; Kho, Celia; Kendall, Timothy J.; Leblond, Anne-Laure; Keppler, Selina J.; Bielecki, Piotr; Steiger, Katja; Hofmann, Maike; Rippe, Karsten; Zitzelsberger, Horst; Weber, Achim; Malek, Nisar; Luedde, Tom; Vucur, Mihael; Augustin, Hellmut G.; Flavell, Richard; Parnas, Oren; Rad, Roland; Pabst, Olivier; Henderson, Neil C.; Huber, Samuel; Macpherson, Andrew; Knolle, Percy; Claassen, Manfred; Geier, Andreas; Trautwein, Christoph; Unger, Kristian; Elinav, Eran; Waisman, Ari; Abdullah, Zeinab; Haller, Dirk; Tacke, Frank; Anstee, Quentin M.; Heikenwalder, Mathias
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Neuronal silence as a prosurvival factor for adult-born olfactory bulb interneurons
err2023-05-01
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errSu, Xin; Kovalchuk, Yury; Mojtahedi, Nima; Kamari, Farzin; Claassen, Manfred; Garaschuk, Olga
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Positive feedback induces switch between distributive and processive phosphorylation of Hog1
err2023-04-29
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errMosbacher, Maximilian; Lee, Sung Sik; Yaakov, Gilad; Nadal-Ribelles, Mariona; de Nadal, Eulalia; van Drogen, Frank; Posas, Francesc; Peter, Matthias; Claassen, Manfred
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Simulation-based inference of differentiation trajectories from RNA velocity fields
err2022-12-01
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errGupta, Revant; Cerletti, Dario; Gut, Gilles; Oxenius, Annette; Claassen, Manfred
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Preexisting comorbidities shape the immune response associated with severe COVID-19
err2022-08-01
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errKreutmair, Stefanie; Kauffmann, Manuel; Unger, Susanne; Ingelfinger, Florian; Nunez, Nicolas Gonzalo; Alberti, Chiara; De Feo, Donatella; Krishnarajah, Sinduya; Friebel, Ekaterina; Ulutekin, Can; Babaei, Sepideh; Gaborit, Benjamin; Lutz, Mirjam; Jurado, Nicole Puertas; Malek, Nisar P.; Gopel, Siri; Rosenberger, Peter; Haberle, Helene A.; Ayoub, Ikram; Al-Hajj, Sally; Claassen, Manfred; Liblau, Roland; Martin-Blondel, Guillaume; Bitzer, Michael; Roquilly, Antoine; Becher, Burkhard
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High-dimensional immune profiling identifies a biomarker to monitor dimethyl fumarate response in multiple sclerosis
err2022-07-26
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errDiebold, Martin; Galli, Edoardo; Kopf, Andreas; Sanderson, Nicholas S. R.; Callegari, Ilaria; Benkert, Pascal; Nunez, Nicolas Gonzalo; Ingelfinger, Florian; Herms, Stefan; Cichon, Sven; Kappos, Ludwig; Kuhle, Jens; Becher, Burkhard; Claassen, Manfred; Derfuss, Tobias
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Dynamics of Melanoma-Associated Epitope-Specific CD8+T Cells in the Blood Correlate With Clinical Outcome Under PD-1 Blockade
err2022-07-07
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errGaissler, Andrea; Meldgaard, Trine Sundebo; Heeke, Christina; Babaei, Sepideh; Tvingsholm, Siri Amanda; Bochem, Jonas; Spreuer, Janine; Amaral, Teresa; Wagner, Nikolaus Benjamin; Klein, Reinhild; Meier, Friedegund; Garbe, Claus; Eigentler, Thomas K.; Pawelec, Graham; Claassen, Manfred; Weide, Benjamin; Hadrup, Sine Reker; Wistuba-Hamprecht, Kilian
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Privacy-preserving federated neural network learning for disease-associated cell classification
err2022-05-01
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errSav, Sinem; Bossuat, Jean-Philippe; Troncoso-Pastoriza, Juan R.; Claassen, Manfred; Hubaux, Jean-Pierre
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Novel Blood Vascular Endothelial Subtype-Specific Markers in Human Skin Unearthed by Single-Cell Transcriptomic Profiling
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IF5.2
err2022-03-25
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errHe, Yuliang; Tacconi, Carlotta; Dieterich, Lothar C.; Kim, Jihye; Restivo, Gaetana; Gousopoulos, Epameinondas; Lindenblatt, Nicole; Levesque, Mitchell P.; Claassen, Manfred; Detmar, Michael
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