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J

Johan Staaf

 lund university

67H-index
507Paper Count
2.7WCitation Count
Published Papers 146
Publication Date
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High-depth whole genome sequencing of premalignant breast lesions reveals rearrangement hotspots and personalized management opportunities
errNature Communications
IF15.7
err2026-05-19
err0
errOAAI
errLucia Chmelova; Helen R. Davies; Andrea Degasperi; Giuseppe Rinaldi; Leon Wils; Daniella Black; Yasin Memari; Gene C. C. Koh; Scott Shooter; Lennart Mulder; Petra Kristel; Karoly Szuhai; Gino Prasad; Ivy Tsz-Lo Wong; Jens Luebeck; Yogesh Kumar; Jan Czarnecki; Shadi Basyuni; Zoya Kingsbury; Mark T. Ross; Øystein Garred; Margit Riis; Karin T. Lande; Johan Vallon-Christersson; Anna Ehinger; Amit Agrawal; Stuart A. McIntosh; Vineet Bafna; Paul S. Mischel; Jelle Wesseling; Johan Staaf; Therese Sørlie; Esther H. Lips; Serena Nik-Zainal
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errSave
DNA methylation and expression of MAPRE3 affect overall survival of early-stage non-small cell lung cancer patients
errMolecular Oncology
IF4.5
err2026-04-25
err0
errOAAI
errChao Chen; Jiancheng Cheng; Ruili Hou; Xiaoyuan Zheng; Li Su; Maria Moksnes Bjaanæs; Anna Karlsson; Maria Planck; Johan Staaf; Åslaug Helland; Manel Esteller; David C. Christiani; Feng Chen; Xiaofei Cao; Ruyang Zhang
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errSave
Homologous recombination deficiency in primary ER-positive and HER2-negative breast cancer
errCommunications Medicine
IF6.3
err2026-02-16
err0
errOAAI
errHelen R. Davies; Daniella Black; Anders Kvist; Kristín Sigurjónsdóttir; Ana Bosch; Ramsay Bowden; Yasin Memari; Ziqian Chen; Giuseppe Rinaldi; Frida Rosengren; Deborah F. Nacer; Srinivas Veerla; Lennart Hohmann; Nicklas Nordborg; Jari Häkkinen; Johan Vallon-Christersson; Åke Borg; Serena Nik-Zainal; Johan Staaf
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errSave
Stand-alone Transcriptional Immune Response Prediction in Primary Triple-Negative Breast Cancer
errCancer Research Communications
IF0
err2025-12-01
err0
errOAAI
errRoostee, Suze; Killander, Fredrika; Saghir, Hani; Nacer, Deborah F.; Hakkinen, Jari; Sasiain, Inaki; Veerla, Srinivas; Vallon-Christersson, Johan; Loman, Niklas; Ohlsson, Mattias; Staaf, Johan
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errSave
Molecular profiling of the Basal-like intrinsic molecular subtype in primary ER-positive HER2-negative breast cancer
errGenome Medicine
IF11.2
err2025-12-01
err0
errOAAI
errLennart Hohmann; Deborah F. Nacer; Mattias Aine; Yasin Memari; Daniella Black; Ramsay Bowden; Helen R. Davies; Åke Borg; Johan Vallon-Christersson; Serena Nik-Zainal; Johan Staaf
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errSave
Clinical potential of whole-genome data linked to mortality statistics in patients with breast cancer in the UK: a retrospective analysis
errThe Lancet Oncology
IF0
err2025-10-07
err0
errOAAI
errDaniella Black; Helen Ruth Davies; Gene Ching Chiek Koh; Lucia Chmelova; Marko Cubric; Georgia Chalivelaki Chan; Andrea Degasperi; Jan Czarnecki; Ping Jing Toong; Yasin Memari; James Whitworth; Salome Jingchen Zhao; Yogesh Kumar; Shadi Basyuni; Giuseppe Rinaldi; Scott Shooter; Vladyslav Dembrovskyi; Rosie Davies; Maria Chatzou Dunford; Ellen Copson; Carlo Palmieri; Åke Borg; John Ambrose; Catey Bunce; Alona Sosinsky; Prabhu Arumugam; Matthew Arthur Brown; Johan Staaf; Nicholas Turner; Serena Nik-Zainal
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errSave
Multi-omic profiling of squamous cell lung cancer identifies metabolites and related genes associated with squamous cell carcinoma
errMolecular Oncology
IF4.5
err2025-09-03
err0
errOAAI
errJohan Staaf; Daniel Ehinger; Hans Brunnström; Mats Jönsson; Frida Rosengren; Marija Kotevska; Anna Karlsson; Mattias Aine; Christian Frezza; Maria Planck; Elsa Arbajian
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errSave
Capturing breast cancers’ copy-number landscape in routine pathology: Exploiting low-resolution, genome-wide sequencing to identify HRD and beyond
errBritish Journal of Cancer
IF6.8
err2025-08-23
err0
PREAI
errC. J. H. Kramer; L. M. van Wijk; D. Ruano; S. Gelpke-Vermeulen; K. van der Tuin; N. van der Stoep; T. van Wezel; J. Wesseling; J. Vallon-Christersson; V. T. H. B. M. Smit; D. Cohen; H. Vrieling; J. Staaf; T. Bosse; C. J. van Asperen; M. P. G. Vreeswijk
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errSave
Gene expression-based identification of prognostic markers in lung adenocarcinoma
errPLOS ONE
IF2.6
err2025-05-07
err0
errOAAI
errSalomonsson, Annette; Ehinger, Daniel; Jonsson, Mats; Botling, Johan; Micke, Patrick; Brunnstrom, Hans; Staaf, Johan; Planck, Maria
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errSave
RET inhibition overcomes resistance to combined CDK4/6 inhibitor and endocrine therapy in ER plus breast cancer
errFRONTIERS IN ONCOLOGY
IF3.3
err2025-01-27
err0
errOAAI
errKindt, Charlotte K.; Ehmsen, Sidse; Traynor, Sofie; Policastro, Benedetta; Nissen, Nikoline; Jakobsen, Mie K.; Hundebol, Monique F.; Johansen, Lene E.; Bak, Martin; Arbajian, Elsa; Staaf, Johan; Ditzel, Henrik J.; Alves, Carla L.
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errSave
Evaluation of alternative prognostic thresholds for SP142 and 22C3 immunohistochemical PD-L1 expression in triple-negative breast cancer: results from a population-based cohort
errBREAST CANCER RESEARCH AND TREATMENT
IF3
err2024-12-10
err0
errOAAI
errSigurjonsdottir, Gudbjoerg; De Marchi, Tommaso; Ehinger, Anna; Hartman, Johan; Ullen, Susann; Leandersson, Karin; Bosch, Ana; Staaf, Johan; Killander, Fredrika; Nimeus, Emma
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errSave
A two-phase epigenome-wide four-way gene-smoking interaction study of overall survival for early-stage non-small cell lung cancer
errMOLECULAR ONCOLOGY
IF4.5
err2024-12-04
err0
PREAI
errChen, Leyi; Wang, Xiang; Xie, Ning; Zhang, Zhongwen; Xu, Xiaowen; Xue, Maojie; Yang, Yuqing; Liu, Liya; Su, Li; Bjaanaes, Maria; Karlsson, Anna; Planck, Maria; Staaf, Johan; Helland, Aslaug; Esteller, Manel; Christiani, David C.; Chen, Feng; Zhang, Ruyang
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errSave
The analytical and clinical validity of AI algorithms to score TILs in TNBC: can we use different machine learning models interchangeably?
errECLINICALMEDICINE
IF10
err2024-12-01
err0
PREAI
errVidal, Joan Martinez; Tsiknakis, Nikos; Staaf, Johan; Bosch, Ana; Ehinger, Anna; Nimeus, Emma; Salgado, Roberto; Bai, Yalai; Rimm, David L.; Hartman, Johan; Acs, Balazs
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errSave
Tumor purity estimated from bulk DNA methylation can be used for adjusting beta values of individual samples to better reflect tumor biology
errgenomics proteomics bioinformatics
IF2.8
err2024-11-04
err1
errOAAI
errSasiain, Inaki; Nacer, Deborah F.; Aine, Mattias; Veerla, Srinivas; Staaf, Johan
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errSave
Tumour immune characterisation of primary triple-negative breast cancer using automated image quantification of immunohistochemistry-stained immune cells
errSCIENTIFIC REPORTS
IF3.9
err2024-09-13
err1
errOAAI
errRoostee, Suze; Ehinger, Daniel; Jonsson, Mats; Phung, Bengt; Jonsson, Goeran; Sjodahl, Gottfrid; Staaf, Johan; Aine, Mattias
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errSave
FHL2 expression by cancer-associated fibroblasts promotes metastasis and angiogenesis in lung adenocarcinoma
errINTERNATIONAL JOURNAL OF CANCER
IF4.7
err2024-09-08
err1
errOAAI
errKanzaki, Ryu; Reid, Steven; Bolivar, Paulina; Sjolund, Jonas; Staaf, Johan; Larsson, Sara; Shintani, Yasushi; Pietras, Kristian
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errSave
Genomic alterations associated with resistance and circulating tumor DNA dynamics for early detection of progression on CDK4/6 inhibitor in advanced breast cancer
errINTERNATIONAL JOURNAL OF CANCER
IF4.7
err2024-08-11
err3
errOAAI
errKindt, Charlotte K.; Alves, Carla L.; Ehmsen, Sidse; Kragh, Amalie; Reinert, Thomas; Vogsen, Marianne; Kodahl, Annette R.; Ronlev, Jeanette D.; Ardik, Dilan; Sorensen, Anna L.; Evald, Kirstine; Clemmensen, Mia L.; Staaf, Johan; Ditzel, Henrik J.
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errSave
Kataegis in clinical and molecular subgroups of primary breast cancer
errNPJ BREAST CANCER
IF7.6
err2024-04-24
err1
errOAAI
errVeerla, Srinivas; Staaf, Johan
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errSave
A 14-gene B-cell immune signature in early-stage triple-negative breast cancer (TNBC): a pooled analysis of seven studies
errEBIOMEDICINE
IF10.8
err2024-04-01
err3
errOAAI
errConte, Benedetta; Braso-Maristany, Fara; Hernandez, Adela Rodriguez; Pascual, Tomas; Villacampa, Guillermo; Schettini, Francesco; Losada, Maria J. Vidal; Segui, Elia; Angelats, Laura; Garcia-Fructuoso, Isabel; Gomez-Bravo, Raquel; Lorman-Carbo, Natalia; Pare, Laia; Marin-Aguilera, Mercedes; Martinez-Saez, Olga; Adamo, Barbara; Sanfeliu, Esther; Fratini, Beatrice; Falato, Claudette; Chic, Nuria; Vivancos, Ana; Villagrasa, Patricia; Staaf, Johan; Parker, Joel S.; Perou, Charles M.; Prat, Aleix
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errSave
Current and emerging sequencing-based tools for precision cancer medicine
errMOLECULAR ASPECTS OF MEDICINE
IF10.3
err2024-04-01
err3
PREAI
errEdsjo, Anders; Gisselsson, David; Staaf, Johan; Holmquist, Louise; Fioretos, Thoas; Cavelier, Lucia; Rosenquist, Richard
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Douglas F. Easton
H-index: 177 · Papers: 1.2K
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Manel Esteller
H-index: 165 · Papers: 1.6K
P
P. Andrew Futreal
H-index: 159 · Papers: 1.3K
P
Peter J. Campbell
H-index: 159 · Papers: 747
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