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J

Jeff W. Lichtman

Harvard University

86H-index
359Paper Count
3.6WCitation Count
Published Papers 87
Publication Date
Human brain organoids record the passage of time over multiple years
errNature
IF48.5
err2026-08-19
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errOAAI
errIrene Faravelli; Noelia Antón-Bolaños; Anqi Wei; Tyler Faits; Abhishek Sampath Kumar; Sophia Andreadis; Rahel Kastli; Marta Montero Crespo; Mara Steiger; Daniel Leible; Elizabeth Zhang; Bobae An; Yaron Meirovitch; Sayara Silwal; Sung Min Yang; Alexander Kovacsovics; Xian Adiconis; Helene Kretzmer; Joshua Z. Levin; Edward S. Boyden; Jeff Lichtman; Aviv Regev; Alexander Meissner; Paola Arlotta
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Connectomic evidence that ordered activity drives neuromuscular network formation
err2026-06-30
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errOAAI
errYaron Meirovitch; Kai Kang; Ryan W. Draft; Elisa C. Pavarino; Maria Fernanda Henao Echeverri; Fuming Yang; Stephen G. Turney; Daniel R. Berger; Adi Peleg; Marta Montero-Crespo; Yuelong Wu; Richard L. Schalek; Ju Lu; Jean Livet; Juan-Carlos Tapia; Jeff W. Lichtman
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Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers
err2026-04-27
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errOAAI
errXiaotang Lu; Yuelong Wu; Peter H. Li; Tao Fang; Richard L. Schalek; Yaxin Su; Daniel R. Berger; Jeffery D. Carter; Sean Lynch; Daniel J. Schneider; Shashi Gupta; Viren Jain; Nebojsa Janjic; Jeff W. Lichtman
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Lrrn-mediated retinal ganglion cell targeting drives visual circuit assembly for brightness and contrast detection
err2026-01-23
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errOAAI
errElena Putti; Giulia Faini; Julie Thanh-Mai Dang; Jay H. Savaliya; Fanny Eggeler; Karine Duroure; Juliette Vougny; Gonzalo Ortiz-Álvarez; Cristina Pujades; Armin Bahl; Jeff W. Lichtman; Florian Engert; Jonathan Boulanger-Weill; Filippo Del Bene; Shahad Albadri
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SmartEM: machine learning-guided electron microscopy
err2025-12-29
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PREAI
errYaron Meirovitch; Ishaan Singh Chandok; Core Francisco Park; Pavel Potocek; Lu Mi; Shashata Sawmya; Yicong Li; Thomas L. Athey; Vladislav Susoy; Neha Karlupia; Yuelong Wu; Daniel R. Berger; Richard Schalek; Caitlyn A. Bishop; Daniel Xenes; Hannah Martinez; Jordan Matelsky; Brock A. Wester; Hanspeter Pfister; Remco Schoenmakers; Maurice Peemen; Jeff W. Lichtman; Aravinthan D. T. Samuel; Nir Shavit
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Frenet-Serret Frame-Based Decomposition for Part Segmentation of 3-D Curvilinear Structures
err2025-12-01
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PREAI
errLeslie Gu, Shixuan; Adhinarta, Jason Ken; Bessmeltsev, Mikhail; Yang, Jiancheng; Jessica Zhang, Yongjie; Yin, Wenjie; Berger, Daniel; Lichtman, Jeff W.; Pfister, Hanspeter; Wei, Donglai
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TriSAM: Tri-Plane SAM for Zero-Shot Cortical Blood Vessel Segmentation in VEM Images
err2025-06-09
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PREAI
errJia Wan; Wanhua Li; Jason Ken Adhinarta; Atmadeep Banerjee; Evelina Sjöstedt; Jingpeng Wu; Jeff Lichtman; Hanspeter Pfister; Donglai Wei
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Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning
err2025-06-01
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errOAAI
errTian, Qiyuan; Ngamsombat, Chanon; Lee, Hong-Hsi; Berger, Daniel R.; Wu, Yuelong; Fan, Qiuyun; Bilgic, Berkin; Li, Ziyu; Novikov, Dmitry S.; Fieremans, Els; Rosen, Bruce R.; Lichtman, Jeff W.; Huang, Susie Y.
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Paired and solitary ionocytes in the zebrafish olfactory epithelium
err2025-01-01
err0
PREAI
errPeloggia, Julia; Cheung, King Yee; Petkova, Mariela D.; Schalek, Richard; Boulanger-Weill, Jonathan; Wu, Yuelong; Wang, Shuohong; van Hateren, Nicholas J.; Januszewski, Michal; Jain, Viren; Lichtman, Jeff W.; Engert, Florian; Piotrowski, Tatjana; Whitfield, Tanya T.; Jesuthasan, Suresh
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A neural algorithm for computing bipartite matchings
err2024-09-03
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PREAI
errDasgupta, Sanjoy; Meirovitch, Yaron; Zheng, Xingyu; Bush, Inle; Lichtman, Jeff W.; Navlakha, Saket
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Multiplexed volumetric CLEM enabled by scFvs provides insights into the cytology of cerebellar cortex
err2024-08-05
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errOAAI
errHan, Xiaomeng; Lu, Xiaotang; Li, Peter H.; Wang, Shuohong; Schalek, Richard; Meirovitch, Yaron; Lin, Zudi; Adhinarta, Jason; Murray, Karl D.; Macniven, Leah M.; Berger, Daniel R.; Wu, Yuelong; Fang, Tao; Meral, Elif Sevde; Asraf, Shadnan; Ploegh, Hidde; Pfister, Hanspeter; Wei, Donglai; Jain, Viren; Trimmer, James S.; Lichtman, Jeff W.
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Mapping of neuronal and glial primary cilia contactome and connectome in the human cerebral cortex
errNEURON
IF15
err2024-01-01
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PREAI
errWu, Jun Yao; Cho, Su-Ji; Descant, Katherine; Li, Peter H.; Shapson-Coe, Alexander; Januszewski, Michal; Berger, Daniel R.; Meyer, Cailyn; Casingal, Cristine; Huda, Ariba; Liu, Jiaqi; Ghashghaei, Tina; Brenman, Mikayla; Jiang, Michelle; Scarborough, Joseph; Pope, Art; Jain, Viren; Stein, Jason L.; Guo, Jiami; Yasuda, Ryohei; Lichtman, Jeff W.; Anton, E. S.
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Multi-layered maps of neuropil with segmentation-guided contrastive learning
err2023-11-20
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errOAAI
errDorkenwald, Sven; Li, Peter H.; Januszewski, Michal; Berger, Daniel R.; Maitin-Shepard, Jeremy; Bodor, Agnes L.; Collman, Forrest; Schneider-Mizell, Casey M.; da Costa, Nuno Macarico; Lichtman, Jeff W.; Jain, Viren
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Immersion Fixation and Staining of Multicubic Millimeter Volumes for Electron Microscopy- Based Connectomics of Human Brain Biopsies
err2023-08-01
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errOAAI
errKarlupia, Neha; Schalek, Richard L.; Wu, Yuelong; Meirovitch, Yaron; Wei, Donglai; Charney, Alexander W.; Kopell, Brian H.; Lichtman, Jeff W.
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Connectomics of the Octopus vulgaris vertical lobe provides insight into conserved and novel principles of a memory acquisition network
err2023-07-06
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errOAAI
errBidel, Flavie; Meirovitch, Yaron; Schalek, Richard Lee; Lu, Xiaotang; Pavarino, Elisa Catherine; Yang, Fuming; Peleg, Adi; Wu, Yuelong; Shomrat, Tal; Berger, Daniel Raimund; Shaked, Adi; Lichtman, Jeff William; Hochner, Binyamin
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Preserving extracellular space for high-quality optical and ultrastructural studies of whole mammalian brains
err2023-07-01
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errOAAI
errLu, Xiaotang; Han, Xiaomeng; Meirovitch, Yaron; Sjostedt, Evelina; Schalek, Richard L.; Lichtman, Jeff W.
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mEMbrain: an interactive deep learning MATLAB tool for connectomic segmentation on commodity desktops
err2023-06-15
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errOAAI
errPavarino, Elisa C.; Yang, Emma; Dhanyasi, Nagaraju; Wang, Mona D. D.; Bidel, Flavie; Lu, Xiaotang; Yang, Fuming; Park, Core Francisco; Renuka, Mukesh Bangalore; Drescher, Brandon; Samuel, Aravinthan D. T.; Hochner, Binyamin; Katz, Paul S.; Zhen, Mei; Lichtman, Jeff W.; Meirovitch, Yaron
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Post-embryonic remodeling of the C. elegans motor circuit
err2022-11-01
err9
errOAAI
errMulcahy, Ben; Witvliet, Daniel K.; Mitchell, James; Schalek, Richard; Berger, Daniel R.; Wu, Yuelong; Holmyard, Doug; Lu, Yangning; Ahamed, Tosif; Samuel, Aravinthan D. T.; Chisholm, Andrew D.; Lichtman, Jeff W.; Zhen, Mei
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Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes
err2022-09-01
err0
errOAAI
errMatejek, Brian; Franzmeyer, Tim; Wei, Donglai; Wang, Xueying; Zhao, Jinglin; Palagyi, Kalman; Lichtman, Jeff W.; Pfister, Hanspeter
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Functional and ultrastructural analysis of reafferent mechanosensation in larval zebrafish
err2022-01-01
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errOAAI
errOdstrcil, Iris; Petkova, Mariela D.; Haesemeyer, Martin; Boulanger-Weill, Jonathan; Nikitchenko, Maxim; Gagnon, James A.; Oteiza, Pablo; Schalek, Richard; Peleg, Adi; Portugues, Ruben; Lichtman, Jeff W.; Engert, Florian
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