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Jillian Phallen

johns hopkins university

28H-index
204Paper Count
9.0KCitation Count
Published Papers 51
Publication Date
Cell-free DNA fragmentomes for noninvasive detection of liver cirrhosis and other diseases
err2026-03-04
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PREAI
errAkshaya V. Annapragada; Zachariah H. Foda; Hope Orjuela; Carter Norton; Shashikant Koul; Noushin Niknafs; Sarah Short; Keerti Boyapati; Adrianna Bartolomucci; Dimitrios Mathios; Michael Noë; Chris Cherry; Jacob Carey; Alessandro Leal; Bryan Chesnick; Nicholas C. Dracopoli; Jamie E. Medina; Nicholas A. Vulpescu; Daniel C. Bruhm; Sarah Bacus; Vilmos Adleff; Amy K. Kim; Stephen B. Baylin; Gregory D. Kirk; Andrei Sorop; Razvan Iacob; Speranta Iacob; Liana Gheorghe; Simona Dima; Manuel Ramírez-Zea; Katherine A. McGlynn; Claus L. Feltoft; Julia S. Johansen; John Groopman; Jillian Phallen; Robert B. Scharpf; Victor E. Velculescu
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Author Correction: The genomic landscape of response to EGFR blockade in colorectal cancer
errNature
IF48.5
err2026-02-16
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PREAI
errAndrea Bertotti; Eniko Papp; Siân Jones; Vilmos Adleff; Valsamo Anagnostou; Barbara Lupo; Mark Sausen; Jillian Phallen; Carolyn A. Hruban; Collin Tokheim; Noushin Niknafs; Monica Nesselbush; Karli Lytle; Francesco Sassi; Francesca Cottino; Giorgia Migliardi; Eugenia R. Zanella; Dario Ribero; Nadia Russolillo; Alfredo Mellano; Andrea Muratore; Gianluca Paraluppi; Mauro Salizzoni; Silvia Marsoni; Michael Kragh; Johan Lantto; Andrea Cassingena; Qing Kay Li; Rachel Karchin; Robert Scharpf; Andrea Sartore-Bianchi; Salvatore Siena; Luis A. Diaz; Livio Trusolino; Victor E. Velculescu
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NONINVASIVE DETECTION OF GLIOMAS VIA PLASMA CFDNA FRAGMENTOME PROFILING
err2025-11-01
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errOAAI
errMathios, Dimitrios; Niknafs, Noushin; Annapragada, Akshaya; Bobeff, Ernest; Park, Chul-Kee; Lim, Michael; Jackson, Christopher; Phallen, Jillian; Scharpf, Robert; Velculescu, Victor
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Genome-wide analyses of cell-free DNA for therapeutic monitoring of patients with pancreatic cancer
err2025-05-23
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PREAI
errHruban, Carolyn; Bruhm, Daniel C.; Chen, Inna M.; Koul, Shashikant; Annapragada, Akshaya V.; Vulpescu, Nicholas A.; Short, Sarah; Theile, Susann; Boyapati, Kavya; Alipanahi, Bahar; Skidmore, Zachary L.; Leal, Alessandro; Cristiano, Stephen; Adleff, Vilmos; Johannsen, Julia S.; Scharpf, Robert B.; Foda, Zachariah H.; Phallen, Jillian; Velculescu, Victor E.
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Genomic and fragmentomic landscapes of cell-free DNA for early cancer detection
err2025-03-04
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PREAI
errBruhm, Daniel C.; Vulpescu, Nicholas A.; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Early evaluation of the effectiveness and cost-effectiveness of ctDNA-guided selection for adjuvant chemotherapy in stage II colon cancer
err2024-08-21
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errOAAI
errKramer, Astrid; Greuter, Marjolein J. E.; Schraa, Suzanna J.; Vink, Geraldine R.; Phallen, Jillian; Velculescu, Victor E.; Meijer, Gerrit A.; van den Broek, Daan; Koopman, Miriam; Roodhart, Jeanine M. L.; Fijneman, Remond J. A.; Retel, Valesca P.; Coupe, Veerle M. H.
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DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation
err2024-08-06
err1
errOAAI
errNoe, Michael; Mathios, Dimitrios; Annapragada, Akshaya V.; Koul, Shashikant; Foda, Zacharia H.; Medina, Jamie E.; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation
err2024-03-22
err0
PREAI
errNoe, Michael; Annapragada, Akshaya V.; Foda, Zachariah H.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Comparison of FIT and cell-free DNA analyses for detection of individuals with colorectal cancer in population based screening
err2024-03-22
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PREAI
errWisse, Pieter Henk Abraham; Rubio-Alarcon, Carmen; Schraa, Suzanna J.; Mosquera, Adria C.; Sausen, Mark; Fijneman, Remond J.; Vink, Geraldine R.; de Wit, Meike; Phallen, Jillian; Velculescu, Victor E.; Carvalho, Beatriz; Meijer, Gerrit A.
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Liquid biopsy approaches for monitoring metastatic pancreatic cancer in immunotherapy treated patients
err2024-03-22
err0
PREAI
errHruban, Carolyn Anna; Chen, Inna; Bruhm, Daniel C.; Koul, Shashikant; Yao, Jennie; Theile, Susann; Boyapati, Kavya; Vulpescu, Nicholas A.; Annapragada, Akshaya; Ferreira, Leonardo; Cristiano, Stephen; Foda, Zachariah H.; Adleff, Vilmos; Johansen, Julia; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Genome-wide repeat landscapes in cancer and cell-free DNA
err2024-03-22
err0
PREAI
errAnnapragada, Akshaya; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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MEDOCC-CrEATE trial: Feasibility of measuring circulating tumor DNA after surgery to guide adjuvant chemotherapy in stage II colon cancer patients
err2024-03-22
err0
PREAI
errFranken, Ingrid; Schraa, Suzanna; van Rooijen, Karlijn; van der Kruijssen, Dave; Rubio-Alarcon, Carmen; Ketelaars, Steven; van Nassau, Sietske; Snetselaar, Teunise; Adriaans, Bregje; Phallen, Jillian; Angiuoli, Sam; Greer, Amy; Verner, Ellen; Coupe, Veerle; Verkooijen, Helena; van Dongen, Miranda; Bosch, Linda; Lanfermeijer, Mirthe; van den Broek, Daan; Meijer, Gerrit; Velculescu, Victor; Sausen, Mark; Koopman, Miriam; Fijneman, Remond; Vink, Geraldine
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Variation of cell-free DNA concentrations in liquid biopsies
err2024-03-22
err0
PREAI
errShort, Sarah; Annapragada, Akshaya V.; Medina, Jamie E.; Foda, Zachariah H.; Mathios, Dimitrios; Hruban, Carolyn; Chiao, Elaine J.; Boyapati, Kavya; Bartolomucci, Adrianna; Boyapati, Keerti; Adleff, Vilmos; Scharpf, Robert B.; Velculescu, Victor E.; Phallen, Jillian
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Genome-wide repeat landscapes in cancer and cell-free DNA
err2024-03-13
err3
errOAAI
errAnnapragada, Akshaya V.; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Early evaluation of effectiveness and cost-effectiveness of ctDNA-guided selection for adjuvant chemotherapy in stage II colon cancer
err2023-10-01
err0
errOAAI
errKramer, A.; Greuter, M. J.; Schraa, S.; Vink, G. R.; Phallen, J.; Velculescu, V.; Meijer, G.; Van den Broek, D.; Koopman, M.; Roodhart, J. M. L.; Fijneman, R.; Retel, V. P.; Coupe, V.
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Cell-Free DNA Fragmentomes in the Diagnostic Evaluation of Patients With Symptoms Suggestive of Lung Cancer
errCHEST
IF8.6
err2023-10-01
err5
errOAAI
errLeal, Alessandro I. C.; Mathios, Dimitrios; Jakubowski, Debbie; Johansen, Jakob S.; Lau, Anna; Wu, Tony; Cristiano, Stephen; Medina, Jamie E.; Phallen, Jillian; Bruhm, Daniel C.; Carey, Jacob; Dracopoli, Nicholas C.; Bojesen, Stig E.; Scharpf, Robert B.; Velculescu, Victor E.; Vachani, Anil; Bach, Peter B.
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A machine learning approach to determine the cellular origin of variants in liquid biopsies
err2023-04-04
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PREAI
errCanzoniero, Jenna V.; Balan, Archana; Phallen, Jillian; Landon, Blair V.; Sivapalan, Lavanya; Green, Benjamin; Belcaid, Zineb; Scott, Susan C.; Pereira, Gavin; Lam, Vincent K.; Zaidi, Ali H.; Kelly, Ronan J.; Hann, Christine L.; Iams, Wade T.; Lovly, Christine M.; Forde, Patrick M.; Meijer, Gerrit A.; Vink, Geraldine R.; Fijneman, Remond J.; Velculescu, Victor E.; Scharpf, Robert B.; Anagnostou, Valsamo
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Ultra-deep targeted sequencing of cell-free DNA and patient-matched white blood cells for treatment response evaluation in patients with metastatic colorectal cancer
err2023-04-04
err0
PREAI
errvan 't Erve, Iris; Medina, Jamie E.; Leal, Alessandro; Papp, Eniko; Phallen, Jillian; Adleff, Vilmos; Chiao, Elaine Jiayuee; Arun, Adith S.; Bolhuis, Karen; Simmons, John K.; Karandikar, Aanavi; Valkenburg, Kenneth C.; Sausen, Mark; Angiuoli, Samuel V.; Scharpf, Robert B.; Punt, Cornelis J.; Meijer, Gerrit J.; Velculescu, Victor E.; Fijneman, Remond J.
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Early detection of ovarian cancer using cell-free DNA fragmentomes
err2023-04-04
err1
PREAI
errAnnapragada, Akshaya V.; Medina, Jamie E.; Lof, Pien; Mathios, Dimitrios; Foda, Zachariah H.; Noe, Michael; Short, Sarah; Bartolomucci, Adrianna; Bruhm, Daniel C.; Jung, Euihye; Canzoniero, Jenna; Niknafs, Noushin; Cristiano, Stephen; Adleff, Vilmos; Symecko, Heather; van de Broek, Daan; Baylin, Stephen B.; Press, Michael F.; Slamon, Dennis; Konecny, Gottfried; Domchek, Susan; Drapkin, Ronny; Phallen, Jillian; Scharpf, Robert B.; Lok, Christianne; Velculescu, Victor E.
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Detecting Liver Cancer Using Cell-Free DNA Fragmentomes
err2022-11-18
err63
errOAAI
errFoda, Zachariah H.; Annapragada, Akshaya, V; Boyapati, Kavya; Bruhm, Daniel C.; Vulpescu, Nicholas A.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Niknafs, Noushin; Luu, Harry T.; Goggins, Michael G.; Anders, Robert A.; Sun, Jing; Meta, Shruti H.; Thomas, David L.; Kirk, Gregory D.; Adleff, Vilmos; Phallen, Jillian; Scharpf, Robert B.; Kim, Amy K.; Velculescu, Victor E.
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