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M

Matthew L. Bootsma

university

10H-index
73Paper Count
344Citation Count
Published Papers 15
Publication Date
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Convergent evolution of complex structural variants drives therapy resistance in metastatic prostate cancer
errGenome Biology
IF9.4
err2026-04-15
err0
errOAAI
errThaidy Moreno-Rodriguez; Meng Zhang; Arian Lundberg; Raunak Shrestha; Martin Sjöström; Anupama Pasam; Joanna Chan; Lisa Devereux; Adam Foye; Xiaolin Zhu; Alana S. Weinstein; Anna S. Trigos; Alexander W. Wyatt; Joshi J. Alumkal; Eric J. Small; Rahul Aggarwal; Scott M. Dehm; Matthew L. Bootsma; Shuang G. Zhao; Mathieu Lupien; Felix Y. Feng; Shahneen Sandhu; David A. Quigley
errShare
errSave
Analysis of cfDNA fragmentomics metrics and commercial targeted sequencing panels
errNature Communications
IF15.7
err2025-10-14
err0
errOAAI
errKyle T. Helzer; Marina N. Sharifi; Jamie M. Sperger; Matthew R. Chrostek; Matthew L. Bootsma; Shannon R. Reese; Amy Taylor; Katie R. Kaufmann; Hannah Krause; Jennifer Schehr; Nan Sethakorn; David Kosoff; Christos E. Kyriakopoulos; Michael Bassetti; Grace Blitzer; John Floberg; Martin Sjöström; Andrew J. Armstrong; Himisha Beltran; Rana R. McKay; Felix Y. Feng; Ruth O’Regan; Kari B. Wisinski; Hamid Emamekhoo; Alex W. Wyatt; Joshua M. Lang; Shuang G. Zhao
errShare
errSave
Transcriptomic Signatures of Monocyte-Derived Macrophages Associate With Androgen Receptor Pathway Inhibitor Progression in Prostate Cancer
errprostate
IF0
err2025-07-02
err0
errOAAI
errMarina Nasrin Sharifi; Erika Heninger; Matthew Leeson Bootsma; Emma Elizabeth Recchia; Matthew Thomas Breneman; Amy Kristine Taylor; Shuang George Zhao; Aaron Matthew LeBeau; David Kosoff
errShare
errSave
Adverse prognosis gene expression patterns in metastatic castration-resistant prostate cancer
errMOLECULAR ONCOLOGY
IF4.5
err2025-02-22
err0
errOAAI
errSharifi, Marina N.; Feng, Eric; Rydzewski, Nicholas R.; Taylor, Amy K.; Sperger, Jamie M.; Shi, Yue; Helzer, Kyle T.; Bootsma, Matthew L.; Carreno, Viridiana; Chang, Alex H.; Nunamaker, Luke A.; Blitzer, Grace C.; Shang, Tianfu Andy; Subramanian, Aishwarya; Bjartell, Anders; Josefsson, Andreas; Wikstrom, Pernilla; Feng, Emily; Kohli, Manish; Yang, Rendong; Dehm, Scott M.; Small, Eric J.; Aggarwal, Rahul; Quigley, David A.; Lang, Joshua M.; Zhao, Shuang G.; Sjostrom, Martin
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errSave
A phenocopy signature of TP53 loss predicts response to chemotherapy
errNPJ PRECISION ONCOLOGY
IF8
err2024-10-02
err0
errOAAI
errBakhtiar, Hamza; Sharifi, Marina N.; Helzer, Kyle T.; Shi, Yue; Bootsma, Matthew L.; Shang, Tianfu A.; Chrostek, Matthew R.; Berg, Tracy J.; Carson Callahan, S.; Carreno, Viridiana; Blitzer, Grace C.; West, Malinda T.; O'Regan, Ruth M.; Wisinski, Kari B.; Sjostrom, Martin; Zhao, Shuang G.
errShare
errSave
Clinical cell-surface targets in metastatic and primary solid cancers
errJCI INSIGHT
IF6.1
err2024-09-24
err0
errOAAI
errSharifi, Marina N.; Shi, Yue; Chrostek, Matthew R.; Callahan, S. Carson; Shang, Tianfu; Berg, Tracy J.; Helzer, Kyle T.; Bootsma, Matthew L.; Sjostrom, Martin; Josefsson, Andreas; Feng, Felix Y.; Huffman, Laura B.; Schulte, Chris; Blitzer, Grace C.; Sodji, Quaovi H.; Morris, Zachary S.; Ma, Vincent T.; Meimetis, Labros; Kosoff, David; Taylor, Amy K.; LeBeau, Aaron M.; Lang, Joshua M.; Zhao, Shuang G.
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errSave
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer
errNATURE GENETICS
IF31.8
err2024-07-17
err2
errOAAI
errZhao, Shuang G.; Bootsma, Matthew; Zhou, Stanley; Shrestha, Raunak; Moreno-Rodriguez, Thaidy; Lundberg, Arian; Pan, Chu; Arlidge, Christopher; Hawley, James R.; Foye, Adam; Weinstein, Alana S.; Sjostrom, Martin; Zhang, Meng; Li, Haolong; Chesner, Lisa N.; Rydzewski, Nicholas R.; Helzer, Kyle T.; Shi, Yue; Bailey, Adina M.; Zhang, Li; Beer, Tomasz M.; Thomas, George; Chi, Kim N.; Gleave, Martin; Zoubeidi, Amina; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen; Bose, Rohit; Huang, Franklin W.; Fong, Larry; Lara, Primo N.; Evans, Christopher P.; Huang, Jiaoti; Lynch, Molly; Dehm, Scott M.; Lang, Joshua M.; Alumkal, Joshi J.; He, Hansen H.; Wyatt, Alexander W.; Aggarwal, Rahul; Zwart, Wilbert; Small, Eric J.; Quigley, David A.; Lupien, Mathieu; Feng, Felix Y.
errShare
errSave
Fragmentomic analysis of a circulating tumor DNA targeted cancer gene panel discriminates ER status in metastatic breast cancer liquid biopsies
errCANCER RESEARCH
IF16.6
err2024-05-02
err0
PREAI
errHelzer, Kyle; Sperger, Jamie; Shi, Yue; Carreno, Viridiana; Krause, Hannah; Kaufmann, Katherine; Mora-Rodriguez, Leilani; Bootsma, Matthew; Burkard, Mark; O'Regan, Ruth; Wisinski, Kari; Lang, Joshua; Zhao, Shuang (George); West, Malinda; Sharifi, Marina
errShare
errSave
A platform-independent AI tumor lineage and site (ATLAS) classifier
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-03-13
err0
errOAAI
errRydzewski, Nicholas R.; Shi, Yue; Li, Chenxuan; Chrostek, Matthew R.; Bakhtiar, Hamza; Helzer, Kyle T.; Bootsma, Matthew L.; Berg, Tracy J.; Harari, Paul M.; Floberg, John M.; Blitzer, Grace C.; Kosoff, David; Taylor, Amy K.; Sharifi, Marina N.; Yu, Menggang; Lang, Joshua M.; Patel, Krishnan R.; Citrin, Deborah E.; Sundling, Kaitlin E.; Zhao, Shuang G.
errShare
errSave
Fragmentomic analysis of circulating tumor DNA-targeted cancer panels
errANNALS OF ONCOLOGY
IF65.4
err2023-09-01
err10
PREAI
errHelzert, K. T.; Sharifi, M. N.; Spergert, J. M.; Shi, Y.; Annala, M.; Bootsma, M. L.; Reese, S. R.; Taylor, A.; Kaufmann, K. R.; Krause, H. K.; Schehr, J. L.; Sethakorn, N.; Kosoff, D.; Kyriakopoulos, C.; Burkard, M. E.; Rydzewski, N. R.; Yu, M.; Harari, P. M.; Bassetti, M.; Blitzer, G.; Floberg, J.; Sjoestroem, M.; Quigley, D. A.; Dehm, S. M.; Armstrong, A. J.; Mckay, R. R.; Beltran, H.; Feng, F. Y.; O'Regan, R.; Wisinski, K. B.; Emamekhoo, H.; Wyatt, A. W.; Lang, J. M.; Zhao, S. G.
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errSave
Liquid biopsy biomarker analysis of a phase II trial of sacituzumab govitecan in castrate resistant metastatic prostate cancer
errCANCER RESEARCH
IF16.6
err2023-06-02
err0
PREAI
errSperger, Jamie M.; Taylor, Amy K.; Shi, Yue; Stahlfeld, Charlotte N.; Helzer, Kyle; Bootsma, Matthew; Kaufmann, Katherine R.; Sharifi, Marina N.; Kyriakopoulos, Christos E.; Slovin, Susan; Tagawa, Scott; Dehm, Scott; Zhao, Shuang G.; Lang, Joshua M.
errShare
errSave
Intrinsic Molecular Subtypes of Metastatic Castration-Resistant Prostate Cancer
errCLINICAL CANCER RESEARCH
IF10.2
err2022-10-19
err5
errOAAI
errFeng, Eric; Rydzewski, Nicholas R.; Zhang, Meng; Lundberg, Arian; Bootsma, Matthew; Helzer, Kyle T.; Lang, Joshua M.; Aggarwal, Rahul; Small, Eric J.; Quigley, David A.; Sjostrom, Martin; Zhao, Shuang G.
errShare
errSave
The ghosts of propagation past: haplotype information clarifies the relative influence of stocking history and phylogeographic processes on contemporary population structure of walleye (Sander vitreus)
errEVOLUTIONARY APPLICATIONS
IF3.2
err2021-01-29
err24
errOAAI
errBootsma, Matthew L.; Miller, Loren; Sass, Greg G.; Euclide, Peter T.; Larson, Wesley A.
errShare
errSave
A GT-seq panel for walleye (Sander vitreus) provides important insights for efficient development and implementation of amplicon panels in non-model organisms
errMOLECULAR ECOLOGY RESOURCES
IF5.5
err2020-08-04
err37
errOAAI
errBootsma, Matthew L.; Gruenthal, Kristen M.; McKinney, Garrett J.; Simmons, Levi; Miller, Loren; Sass, Greg G.; Larson, Wesley A.
errShare
errSave
Attack of the PCR clones: Rates of clonality have little effect on RAD-seq genotype calls
errMOLECULAR ECOLOGY RESOURCES
IF5.5
err2019-10-01
err16
PREAI
errEuclide, Peter T.; McKinney, Garrett J.; Bootsma, Matthew; Tarsa, Charlene; Meek, Mariah H.; Larson, Wesley A.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Eric J. Small
H-index: 118 · Papers: 1.3K
张
张丽 (Li Zhang)
H-index: 112 · Papers: 4.1K
F
Felix Y. Feng
H-index: 109 · Papers: 1.7K
H
Himisha Beltran
H-index: 87 · Papers: 899
A
Anders Bjartell
H-index: 81 · Papers: 713
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