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Frederik Otzen Bagger

Copenhagen University Hospital

32H-index
152Paper Count
7.7KCitation Count
Published Papers 42
Publication Date
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Translational bioinformatics stalls at implementation
errBriefings in Bioinformatics
IF7.7
err2026-04-17
err0
errOAAI
errLars Rønn Olsen; Helene Scheel Wegener; Puck Quarles van Ufford; Aimilia Schina; Frederik Kirk; Anne K Winding; Birgitte Hagelskjær; Chelsea Lennox; Chloe Pittman; Christopher T B Strømblad; Ida K Buhl; Inigo P Luengo; Mads Bonde; Majbritt B Madsen; Mikail Gögenur; Morten Rasmussen; Nicolas Rapin; Hermina Jakupovic; Simon Rasmussen; Tiara Dusselier; Michael Krauthammer; Ole Lund; Signe Modvig; Frederik O Bagger
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Exploring survival-associated transcriptomic subtypes in ovarian cancer using RNAseq from FFPE tissues in a clinical trial cohort
errTranslational Oncology
IF4.1
err2026-03-19
err0
errOAAI
errMaj K Kjeldsen; Frederik Otzen Bagger; Henrik Roed; Gitte-Bettina Nyvang; Charlotte Aaquist Haslund; Anja Oer Knudsen; Anne Krejbjerg Motavaf; Susanne Malander; Maarit Anttila; Gabriel Lindahl; Johanna Mäenpää; Maria Dimoula; Theresa Werner; Trine Zeeberg Iversen; Sakari Hietanen; Lars Fokdal; Hanna Dahlstrand; Line Bjørge; Michael Birrer; Mansoor Raza Mirza
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Transcriptome- and Epigenome-Wide Association Studies of Tic Spectrum Disorder in Discordant Monozygotic Twins
errGenes
IF2.8
err2026-01-26
err0
errOAAI
errJonas Dalsberg; Cathrine Jespersgaard; Amanda M. Levy; Anna Maria Asplund; Frederik Otzen Bagger; Nanette M. Debes; Qihua Tan; Zeynep Tümer; Mathis Hildonen
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errSave
Functional assessment of protein variants in structured domains by fluorescence cross-correlation spectroscopy
errScientific Reports
IF3.9
err2026-01-02
err0
errOAAI
errÀngels Mateu-Regué; Luca Mariani; Frederik Otzen Bagger; Muthiah Bose; Finn Cilius Nielsen
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errSave
Thrombopoietin increases susceptibility for EVI1 + KMT2A-MLLT3-driven AML expressing stem cell genes linked to poor outcome
errNature Communications
IF15.7
err2025-12-19
err0
errOAAI
errHugues-Étienne Châtel-Soulet; Sabine Juge; Ana Luisa Pereira; Jonathan Seguin; Athimed El Taher; Federica Valigi; Zivojin Jevtic; Rathick Sivalingam; Frederik Otzen Bagger; Paul Büschl; Marwa Almosailleakh; Alexander Tzankov; Wei Tong; Mineo Kurokawa; César Nombela Arrieta; Juerg Schwaller
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errSave
Recommendations for bioinformatics in clinical practice
errGenome Medicine
IF11.2
err2025-10-19
err0
errOAAI
errKsenia Lavrichenko; Emilie Sofie Engdal; Rasmus L. Marvig; Anders Jemt; Jone Marius Vignes; Henrikki Almusa; Kristine Bilgrav Saether; Eiríkur Briem; Eva Caceres; Edda María Elvarsdóttir; Magnús Halldór Gíslason; Maria K. Haanpää; Viktor Henmyr; Ronja Hotakainen; Eevi Kaasinen; Roan Kanninga; Sofia Khan; Mary Gertrude Lie-Nielsen; Majbritt Busk Madsen; Niklas Mähler; Khurram Maqbool; Ramprasad Neethiraj; Karl Nyrén; Minna Paavola; Peter Pruisscher; Ying Sheng; Ashish Kumar Singh; Aashish Srivastava; Thomas K. Stautland; Daniel T. Andreasen; Esmee ten Berk de Boer; Søren Vang; Valtteri Wirta; Frederik Otzen Bagger
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Copenhagen Prospective Personalized Oncology (CoPPO)—impact of comprehensive genomic profiling in more than 2000 patients in a phase I setting
errAnnals of Oncology
IF65.4
err2025-04-15
err0
PREAI
errL. Belcaid; M. Højgaard; I. Tuxen; I. Spanggaard; U. Lassen; L. Robinson; M. Rossing; F. Bagger; L.B. Ahlborn; A.Y. Schmidt; J.P. Hasselby; E. Santoni-Rugiu; F.C. Nielsen; C.W. Yde; K. Rohrberg
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SPATIAL TRANSCRIPTOMIC COMPARISONS OF GLIOBLASTOMA TISSUE REVEAL UPREGULATION OF NEURODEVELOPMENTAL PATHWAYS AND SYNAPTIC GENES IN INFILTRATING TUMOR CELLS
errNEURO-ONCOLOGY
IF13.4
err2024-11-11
err0
PREAI
errHarwood, Dylan; Pedersen, Vilde; Bager, Nicolai; Schmidt, Ane; Stannius, Tobias; Areskeviciute, Ausrine; Josefsen, Knud; Noroxe, Dorte; Scheie, David; Rostalski, Hannah; Lue, Maya; Locallo, Alessio; Lassen, Ulrik; Bagger, Frederik; Weischenfeldt, Joachim; Heiland, Dieter; Vitting-Seerup, Kristoffer; Michaelsen, Signe; Kristensen, Bjarne
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Glioblastoma cells increase expression of notch signaling and synaptic genes within infiltrated brain tissue
errNATURE COMMUNICATIONS
IF15.7
err2024-09-09
err0
errOAAI
errHarwood, Dylan Scott Lykke; Pedersen, Vilde; Bager, Nicolai Schou; Schmidt, Ane Yde; Stannius, Tobias Overlund; Areskeviciute, Ausrine; Josefsen, Knud; Noroxe, Dorte Schou; Scheie, David; Rostalski, Hannah; Lu, Maya Jeje Schuang; Locallo, Alessio; Lassen, Ulrik; Bagger, Frederik Otzen; Weischenfeldt, Joachim; Heiland, Dieter Henrik; Vitting-Seerup, Kristoffer; Michaelsen, Signe Regner; Kristensen, Bjarne Winther
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From breast and gastric to beyond: Expanding HER2 detection in solid tumors using quantitative RNA and protein analysis
errANNALS OF ONCOLOGY
IF65.4
err2024-09-01
err0
PREAI
errEgebjerg, K.; Rohrberg, K. S.; Nielsen, A. Bach; Talman, M-L M.; Laenkholm, A-V; Nedergaard, M.; Garbyal, R.; Wang, J.; Madsen, F. M.; Lassen, U. N.; Knop, A. S.; Spanggaard, I.; Bagger, F.; Mann, M.; Rossing, M.; Mau-Sorensen, M.
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Similar genetic profile in early and late-stage urothelial tract cancer suggests that early genomic testing bears the potential of timely personalized treatment in clinical trials
errANNALS OF ONCOLOGY
IF65.4
err2024-09-01
err0
PREAI
errStormoen, D. R.; Rohrberg, K. S.; Mouw, K. W.; Orum, K.; Szallasi, Z.; Rossing, M.; Bagger, F.; Pappot, H.
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IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2024-04-03
err4
errOAAI
errBorch, Annie; Carri, Ibel; Reynisson, Birkir; Alvarez, Heli M. Garcia; Munk, Kamilla K.; Montemurro, Alessandro; Kristensen, Nikolaj Pagh; Tvingsholm, Siri A.; Holm, Jeppe Sejero; Heeke, Christina; Moss, Keith Henry; Hansen, Ulla Kring; Schaap-Johansen, Anna-Lisa; Bagger, Frederik Otzen; de Lima, Vinicius Araujo Barbosa; Rohrberg, Kristoffer S.; Funt, Samuel A.; Donia, Marco; Svane, Inge Marie; Lassen, Ulrik; Barra, Carolina; Nielsen, Morten; Hadrup, Sine Reker
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Glioblastoma cells increase expression of neurodevelopmental programs and synaptic connectivity in the tumor periphery
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errHarwood, Dylan; Pedersen, Vilde; Bager, Nicolai S.; Schmidt, Ane Y.; Stannius, Tobias O.; Areskeviciute, Ausrine; Josefsen, Knud; Noroxe, Dorte S.; Scheie, David; Rostalski, Hannah E.; Lassen, Ulrik; Bagger, Frederik O.; Weischenfeldt, Joachim; Heiland, Dieter H.; Vitting-Seerup, Kristoffer; Michaelsen, Signe R.; Kristensen, Bjarne W.
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errSave
Building flexible and robust analysis frameworks for molecular subtyping of cancers
errMOLECULAR ONCOLOGY
IF4.5
err2024-01-07
err0
errOAAI
errPedersen, Christina Bligaard; Campos, Benito; Rene, Lasse; Wegener, Helene Scheel; Krishnan, Neeraja M.; Panda, Binay; Vitting-Seerup, Kristoffer; Rossing, Maria; Bagger, Frederik Otzen; Olsen, Lars Ronn
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BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-02
err11
errOAAI
errGislason, Magnus H.; Demircan, Guel Sude; Prachar, Marek; Furtwangler, Benjamin; Schwaller, Juerg; Schoof, Erwin M.; Porse, Bo Torben; Rapin, Nicolas; Bagger, Frederik Otzen
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errSave
The histone demethylase KDM5C functions as a tumor suppressor in AML by repression of bivalently marked immature genes
errLEUKEMIA
IF13.4
err2023-01-12
err7
errOAAI
errTrempenau, Mette Louise; Schuster, Mikkel Bruhn; Pundhir, Sachin; Pereira, Mafalda Araujo; Kalvisa, Adrija; Tapia, Marta; Su, Jinyu; Ge, Ying; de Boer, Bauke; Balhuizen, Alexander; Bagger, Frederik Otzen; Shliaha, Pavel; Sroczynska, Patrycja; Walfridsson, Julian; Gronbaek, Kirsten; Theilgaard-Moench, Kim; Jensen, Ole N. N.; Helin, Kristian; Porse, Bo T. T.
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Benchmarking full-length transcript single cell mRNA sequencing protocols
errBMC GENOMICS
IF3.7
err2022-12-29
err7
errOAAI
errProbst, Victoria; Simonyan, Arman; Pacheco, Felix; Guo, Yuliu; Nielsen, Finn Cilius; Bagger, Frederik Otzen
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errSave
Consensus molecular subtypes in late-stage colorectal cancer
errANNALS OF ONCOLOGY
IF65.4
err2022-09-01
err0
errOAAI
errBjerrum, A.; Stannius, T. O.; Belcaid, L.; Rohrberg, K. S.; Spanggaard, I.; Hoejgaard, M.; Nlelsen, F. C.; Bagger, F. O.; Qvortrup, C.
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H3K9 dimethylation safeguards cancer cells against activation of the interferon pathway
errSCIENCE ADVANCES
IF12.5
err2022-03-18
err21
errOAAI
errHansen, Anne Meldgaard; Ge, Ying; Schuster, Mikkel Bruhn; Pundhir, Sachin; Jakobsen, Janus Schou; Kalvisa, Adrija; Tapia, Marta Cecylia; Gordon, Sandra; Ambri, Francesca; Bagger, Frederik Otzen; Pandey, Deo; Helin, Kristian; Porse, Bo Torben
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Interpretable Autoencoders Trained on Single Cell Sequencing Data Can Transfer Directly to Data from Unseen Tissues
errCELLS
IF5.2
err2021-12-28
err5
errOAAI
errWalbech, Julie Sparholt; Kinalis, Savvas; Winther, Ole; Nielsen, Finn Cilius; Bagger, Frederik Otzen
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Research Directions

No research directions
Co-authors
Cooperation Journals
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Scott W. Lowe
H-index: 156 · Papers: 977
B
Bruce R. Blazar
H-index: 148 · Papers: 1.5K
S
Sarah A. Teichmann
H-index: 141 · Papers: 677
N
Nicole Soranzo
H-index: 138 · Papers: 444
W
Willem H. Ouwehand
H-index: 128 · Papers: 561
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