Not logged in DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation Noe, Michael; Mathios, Dimitrios; Annapragada, Akshaya V.; Koul, Shashikant; Foda, Zacharia H.; Medina, Jamie E.; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
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DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation Noe, Michael; Annapragada, Akshaya V.; Foda, Zachariah H.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Genome-wide repeat landscapes in cancer and cell-free DNA Annapragada, Akshaya; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Longitudinal cell-free tumor load dynamics represent an early endpoint for immunotherapy response in non-small cell lung cancer Sivapalan, Lavanya; Alipanahi, Bahar; Balan, Archana; Medina, Jamie E.; Niknafs, Noushin; Peters, Erica; Wehr, Jaime; Konicki, Alissa; Najjar, Mimi; Chesnick, Bryan; Pereira, Gavin; Rongione, Sarah; Rao, Nisha; Rongione, Michael; Shavatt, Brittany; Rinaldi, Lorenzo; Levy, Benjamin; Velculescu, Victor E.; Forde, Patrick M.; Anagnostou, Valsamo Share Save
Chromatin landscapes of colorectal cancer development and cfDNA fragmentation Vulpescu, Nicholas A.; Foda, Zachariah H.; Wisse, Pieter H.; Medina, Jamie E.; Adleff, Vilmos; Fijneman, Remond J.; Scharpf, Robert B.; Meijer, Gerrit A.; Carvalho, Beatriz; Velculescu, Victor E. Share Save
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Variation of cell-free DNA concentrations in liquid biopsies Short, Sarah; Annapragada, Akshaya V.; Medina, Jamie E.; Foda, Zachariah H.; Mathios, Dimitrios; Hruban, Carolyn; Chiao, Elaine J.; Boyapati, Kavya; Bartolomucci, Adrianna; Boyapati, Keerti; Adleff, Vilmos; Scharpf, Robert B.; Velculescu, Victor E.; Phallen, Jillian Share Save
Monitoring response to immunotherapy using cell free DNA fragmentomes Alipanahi, Bahar; Sivapalan, Lavanya; Medina, Jamie; Skidmore, Zachary L.; Ghanem, Paola; Peters, Erica; Pereira, Gavin; Rao, Nisha; Velliangiri, Kavya; Konicki, Alissa; Cristiano, Stephen; Millberg, Laurel; Carey, Jacob; Lumbard, Keith; Niknafs, Noushin; Chesnick, Bryan; Tom, Jennifer; Leal, Alessandro; Levy, Benjamin; Forde, Patrick; Bach, Peter; Dracopoli, Nicholas C.; Scharpf, Robert B.; Velculescu, Victor; Rinaldi, Lorenzo; Anagnostou, Valsamo Share Save
Genome-wide repeat landscapes in cancer and cell-free DNA Annapragada, Akshaya V.; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Cell-Free DNA Fragmentomes in the Diagnostic Evaluation of Patients With Symptoms Suggestive of Lung Cancer Leal, Alessandro I. C.; Mathios, Dimitrios; Jakubowski, Debbie; Johansen, Jakob S.; Lau, Anna; Wu, Tony; Cristiano, Stephen; Medina, Jamie E.; Phallen, Jillian; Bruhm, Daniel C.; Carey, Jacob; Dracopoli, Nicholas C.; Bojesen, Stig E.; Scharpf, Robert B.; Velculescu, Victor E.; Vachani, Anil; Bach, Peter B. Share Save
Inaugurating High-Throughput Profiling of Extracellular Vesicles for Earlier Ovarian Cancer Detection (Adv. Sci. 27/2023) Jo, Ala; Green, Allen; Medina, Jamie E.; Iyer, Sonia; Ohman, Anders W.; McCarthy, Eric T.; Reinhardt, Ferenc; Gerton, Thomas; Demehin, Daniel; Mishra, Ranjan; Kolin, David L.; Zheng, Hui; Cheon, Jinwoo; Crum, Christopher P.; Weinberg, Robert A.; Rueda, Bo R.; Castro, Cesar M.; Dinulescu, Daniela M.; Lee, Hakho Share Save
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Inaugurating High-Throughput Profiling of Extracellular Vesicles for Earlier Ovarian Cancer Detection Jo, Ala; Green, Allen; Medina, Jamie E.; Iyer, Sonia; Ohman, Anders W.; McCarthy, Eric T.; Reinhardt, Ferenc; Gerton, Thomas; Demehin, Daniel; Mishra, Ranjan; Kolin, David L.; Zheng, Hui; Cheon, Jinwoo; Crum, Christopher P.; Weinberg, Robert A.; Rueda, Bo R.; Castro, Cesar M.; Dinulescu, Daniela M.; Lee, Hakho Share Save
Ultra-deep targeted sequencing of cell-free DNA and patient-matched white blood cells for treatment response evaluation in patients with metastatic colorectal cancer van 't Erve, Iris; Medina, Jamie E.; Leal, Alessandro; Papp, Eniko; Phallen, Jillian; Adleff, Vilmos; Chiao, Elaine Jiayuee; Arun, Adith S.; Bolhuis, Karen; Simmons, John K.; Karandikar, Aanavi; Valkenburg, Kenneth C.; Sausen, Mark; Angiuoli, Samuel V.; Scharpf, Robert B.; Punt, Cornelis J.; Meijer, Gerrit J.; Velculescu, Victor E.; Fijneman, Remond J. Share Save
Early detection of ovarian cancer using cell-free DNA fragmentomes Annapragada, Akshaya V.; Medina, Jamie E.; Lof, Pien; Mathios, Dimitrios; Foda, Zachariah H.; Noe, Michael; Short, Sarah; Bartolomucci, Adrianna; Bruhm, Daniel C.; Jung, Euihye; Canzoniero, Jenna; Niknafs, Noushin; Cristiano, Stephen; Adleff, Vilmos; Symecko, Heather; van de Broek, Daan; Baylin, Stephen B.; Press, Michael F.; Slamon, Dennis; Konecny, Gottfried; Domchek, Susan; Drapkin, Ronny; Phallen, Jillian; Scharpf, Robert B.; Lok, Christianne; Velculescu, Victor E. Share Save
Metastatic Colorectal Cancer Treatment Response Evaluation by Ultra-Deep Sequencing of Cell-Free DNA and Matched White Blood Cells van 't Erve, Iris; Medina, Jamie E.; Leal, Alessandro; Papp, Eniko; Phallen, Jillian; Adleff, Vilmos; Chiao, Elaine Jiayuee; Arun, Adith S.; Bolhuis, Karen; Simmons, John K.; Karandikar, Aanavi; Valkenburg, Kenneth C.; Sausen, Mark; Angiuoli, Samuel, V; Scharpf, Robert B.; Punt, Cornelis J. A.; Meijer, Gerrit A.; Velculescu, Victor E.; Fijneman, Remond J. A. Share Save
Detecting Liver Cancer Using Cell-Free DNA Fragmentomes Foda, Zachariah H.; Annapragada, Akshaya, V; Boyapati, Kavya; Bruhm, Daniel C.; Vulpescu, Nicholas A.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Niknafs, Noushin; Luu, Harry T.; Goggins, Michael G.; Anders, Robert A.; Sun, Jing; Meta, Shruti H.; Thomas, David L.; Kirk, Gregory D.; Adleff, Vilmos; Phallen, Jillian; Scharpf, Robert B.; Kim, Amy K.; Velculescu, Victor E. Share Save
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