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Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers Deyell, Rebecca J.; Shen, Yaoqing; Titmuss, Emma; Dixon, Katherine; Williamson, Laura M.; Pleasance, Erin; Nelson, Jessica M. T.; Abbasi, Sanna; Krzywinski, Martin; Armstrong, Linlea; Bonakdar, Melika; Ch'ng, Carolyn; Chuah, Eric; Dunham, Chris; Fok, Alexandra; Jones, Martin; Lee, Anna F.; Ma, Yussanne; Moore, Richard A.; Mungall, Andrew J.; Mungall, Karen L.; Rogers, Paul C.; Schrader, Kasmintan A.; Virani, Alice; Wee, Kathleen; Young, Sean S.; Zhao, Yongjun; Jones, Steven J. M.; Laskin, Janessa; Marra, Marco A.; Rassekh, Shahrad R. Share Save
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Whole-genome and transcriptome analysis enhances precision cancer treatment options Pleasance, E.; Bohm, A.; Williamson, L. M.; Nelson, J. M. T.; Shen, Y.; Bonakdar, M.; Titmuss, E.; Csizmok, V; Wee, K.; Hosseinzadeh, S.; Grisdale, C. J.; Reisle, C.; Taylor, G. A.; Lewis, E.; Jones, M. R.; Bleile, D.; Sadeghi, S.; Zhang, W.; Davies, A.; Pellegrini, B.; Wong, T.; Bowlby, R.; Chan, S. K.; Mungall, K. L.; Chuah, E.; Mungall, A. J.; Moore, R. A.; Zhao, Y.; Deol, B.; Fisic, A.; Fok, A.; Regier, D. A.; Weymann, D.; Schaeffer, D. F.; Young, S.; Yip, S.; Schrader, K.; Levasseur, N.; Taylor, S. K.; Feng, X.; Tinker, A.; Savage, K. J.; Chia, S.; Gelmon, K.; Sun, S.; Lim, H.; Renouf, D. J.; Jones, S. J. M.; Marra, M. A.; Laskin, J. Share Save
Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes Gagalova, Kristina K.; Warren, Rene L.; Coombe, Lauren; Wong, Johnathan; Nip, Ka Ming; Saint Yuen, Macaire Man; Whitehill, Justin G. A.; Celedon, Jose M.; Ritland, Carol; Taylor, Greg A.; Cheng, Dean; Plettner, Patrick; Hammond, S. Austin; Mohamadi, Hamid; Zhao, Yongjun; Moore, Richard A.; Mungall, Andrew J.; Boyle, Brian; Laroche, Jerome; Cottrell, Joan; Mackay, John J.; Lamothe, Manuel; Gerardi, Sebastien; Isabel, Nathalie; Pavy, Nathalie; Jones, Steven J. M.; Bohlmann, Joerg; Bousquet, Jean; Birol, Inanc Share Save
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Whole-slide laser microdissection for tumour enrichment Coope, Robin J. N.; Schlosser, Colin; Corbett, Richard D.; Pleasance, Stephen; Tessier-Cloutier, Basile; Pandoh, Pawan; Kirk, Heather; Haile, Simon; Zhao, Yongjun; Mungall, Andrew J.; Marra, Marco A. Share Save
Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure Jackman, Shaun D.; Coombe, Lauren; Warren, Rene L.; Kirk, Heather; Trinh, Eva; MacLeod, Tina; Pleasance, Stephen; Pandoh, Pawan; Zhao, Yongjun; Coope, Robin J.; Bousquet, Jean; Bohlmann, Joerg; Jones, Steven J. M.; Birol, Inanc Share Save
Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes Pleasance, Erin; Titmuss, Emma; Williamson, Laura; Kwan, Harwood; Culibrk, Luka; Zhao, Eric Y.; Dixon, Katherine; Fan, Kevin; Bowlby, Reanne; Jones, Martin R.; Shen, Yaoqing; Grewal, Jasleen K.; Ashkani, Jahanshah; Wee, Kathleen; Grisdale, Cameron J.; Thibodeau, My Linh; Bozoky, Zoltan; Pearson, Hillary; Majounie, Elisa; Vira, Tariq; Shenwai, Reva; Mungall, Karen L.; Chuah, Eric; Davies, Anna; Warren, Mya; Reisle, Caralyn; Bonakdar, Melika; Taylor, Gregory A.; Csizmok, Veronika; Chan, Simon K.; Zong, Zusheng; Bilobram, Steve; Muhammadzadeh, Amir; D'Souza, Darryl; Corbett, Richard D.; MacMillan, Daniel; Carreira, Marcus; Choo, Caleb; Bleile, Dustin; Sadeghi, Sara; Zhang, Wei; Wong, Tina; Cheng, Dean; Brown, Scott D.; Holt, Robert A.; Moore, Richard A.; Mungall, Andrew J.; Zhao, Yongjun; Nelson, Jessica; Fok, Alexandra; Ma, Yussanne; Lee, Michael K. C.; Lavoie, Jean-Michel; Mendis, Shehara; Karasinska, Joanna M.; Deol, Balvir; Fisic, Ana; Schaeffer, David F.; Yip, Stephen; Schrader, Kasmintan; Regier, Dean A.; Weymann, Deirdre; Chia, Stephen; Gelmon, Karen; Tinker, Anna; Sun, Sophie; Lim, Howard; Renouf, Daniel J.; Laskin, Janessa; Jones, Steven J. M.; Marra, Marco A. Share Save
Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study Rousseau, Francois; Langlois, Sylvie; Johnson, Jo-Ann; Gekas, Jean; Bujold, Emmanuel; Audibert, Francois; Walker, Mark; Giroux, Sylvie; Caron, Andre; Clement, Valerie; Blais, Jonatan; MacLeod, Tina; Moore, Richard; Gauthier, Julie; Jouan, Loubna; Laporte, Alexandre; Diallo, Ousmane; Parker, Jeremy; Swanson, Lucas; Zhao, Yongjun; Labelle, Yves; Giguere, Yves; Forest, Jean-Claude; Little, Julian; Karsan, Aly; Rouleau, Guy Share Save
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Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples Haile, Simon; Corbett, Richard D.; Bilobram, Steve; Bye, Morgan H.; Kirk, Heather; Pandoh, Pawan; Trinh, Eva; MacLeod, Tina; McDonald, Helen; Bala, Miruna; Miller, Diane; Novik, Karen; Coope, Robin J.; Moore, Richard A.; Zhao, Yongjun; Mungall, Andrew J.; Ma, Yussanne; Holt, Rob A.; Jones, Steven J.; Marra, Marco A. Share Save
Clinical application of whole genome and transcriptome sequencing in cancer care Shen, Yaoqing; Jones, Martin R.; Pleasance, Erin; Bonakdar, Melika; Ch'ng, Carolyn; Reisle, Caralyn; Williamson, Laura; Majounie, Elisa; Taylor, Greg; Chan, Simon; Pierce, Brandon; Zhang, Wei; Muhammadzadeh, Amir; Zhao, Eric Y.; Bleile, Dustin; Mungall, Karen; Thiessen, Nina; Chuah, Eric; Wong, Tina; Corbett, Richard; Ma, Yussanne; Moore, Richard A.; Mungall, Andrew J.; Zhao, Yongjun; Yip, Stephen; Lee, Anna F.; Rassekh, Rod; Deyell, Rebecca; Lim, Howard; Renouf, Daniel; Roscoe, Robyn; Jones, Steven J. M.; Laskin, Janessa; Marra, Marco A. Share Save
The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA Hammond, S. Austin; Warren, Rene L.; Vandervalk, Benjamin P.; Kucuk, Erdi; Khan, Hamza; Gibb, Ewan A.; Pandoh, Pawan; Kirk, Heather; Zhao, Yongjun; Jones, Martin; Mungall, Andrew J.; Coope, Robin; Pleasance, Stephen; Moore, Richard A.; Holt, Robert A.; Round, Jessica M.; Ohora, Sara; Walle, Branden V.; Veldhoen, Nik; Helbing, Caren C.; Birol, Inanc Share Save
Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing Haile, Simon; Corbett, Richard D.; MacLeod, Tina; Bilobram, Steve; Smailus, Duane; Tsao, Philip; Kirk, Heather; McDonald, Helen; Pandoh, Pawan; Bala, Miruna; Hirst, Martin; Miller, Diane; Moore, Richard A.; Mungall, Andrew J.; Schein, Jacquie; Coope, Robin J.; Ma, Yussanne; Zhao, Yongjun; Holt, Rob A.; Jones, Steven J.; Marra, Marco A. Share Save
Breast cancer whole genomes link homologous recombination deficiency (HRD) with therapeutic outcomes Zhao, Eric Y.; Shen, Yaoqing; Pleasance, Erin; Kasaian, Katayoon; Jones, Martin R.; Ch'ng, Carolyn; Reisle, Caralyn; Eirew, Peter; Mungall, Karen; Thiessen, Nina; Ma, Yussanne; Fok, Alexandra; Mungall, Andrew J.; Zhao, Yongjun; Moore, Richard; Villa, Diego; Shenkier, Tamara; Lohrisch, Caroline; Chia, Stephen; Yip, Stephen; Gelmon, Karen; Lim, Howard; Sun, Sophie; Schrader, Kasmintan A.; Young, Sean; Karsan, Aly; Roscoe, Robyn; Laskin, Janessa; Marra, Marco A.; Jones, Steven J. Share Save
Genomic analysis of pancreatic ductal adenocarcinoma in a patient with MUTYH-associated polyposis Schrader, Kasmintan A.; Chu'ng, Carolyn; Zhao, Eric; Wong, Hui-li; Shen, Yaoqing; Jones, Martin; Thomson, Tom; Lim, Howard; Young, Sean; Cremin, Carol; Holt, Robert; Eirew, Peter; Karasinska, Joanna; Schein, Jacquie; Zhao, Yongjun; Mungall, Andy; Moore, Richard; Ma, Yussanne; Fok, Alexandra; Roscoe, Robyn; Yip, Stephen; Mitchell, Gillian; Karsan, Aly; Jones, Steven; Schaeffer, David; Laskin, Janessa; Marra, Marco; Renouf, Daniel Share Save
The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy Kasaian, Katayoon; Wiseman, Sam M.; Walker, Blair A.; Schein, Jacqueline E.; Zhao, Yongjun; Hirst, Martin; Moore, Richard A.; Mungall, Andrew J.; Marra, Marco A.; Jones, Steven J. M. Share Save
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