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Brad Chapman

Harvard University

36H-index
119Paper Count
1.9WCitation Count
Published Papers 23
Publication Date
Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development
err2021-04-02
err53
errOAAI
errProkopenko, Dmitry; Morgan, Sarah L.; Mullin, Kristina; Hofmann, Oliver; Chapman, Brad; Kirchner, Rory; Amberkar, Sandeep; Wohlers, Inken; Lange, Christoph; Hide, Winston; Bertram, Lars; Tanzi, Rudolph E.
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Aβ-accelerated neurodegeneration caused by Alzheimer's-associated ACE variant R1279Q is rescued by angiotensin system inhibition in mice
err2020-09-30
err27
PREAI
errCuddy, Leah K.; Prokopenko, Dmitry; Cunningham, Eric P.; Brimberry, Ross; Song, Peter; Kirchner, Rory; Chapman, Brad A.; Hofmann, Oliver; Hide, Winston; Procissi, Daniele; Hanania, Taleen; Leiser, Steven C.; Tanzi, Rudolph E.; Vassar, Robert
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Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data
err2020-03-19
err31
errOAAI
errProkopenko, Dmitry; Hecker, Julian; Kirchner, Rory; Chapman, Brad A.; Hoffman, Oliver; Mullin, Kristina; Hide, Winston; Bertram, Lars; Laird, Nan; DeMeo, Dawn L.; Lange, Christoph; Tanzi, Rudolph E.
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Best practices for benchmarking germline small-variant calls in human genomes (vol 37, pg 555, 2019)
err2019-03-21
err3
errOAAI
errKrusche, Peter; Trigg, Len; Boutros, Paul C.; Mason, Christopher E.; De La Vega, Francisco M.; Moore, Benjamin L.; Gonzalez-Porta, Mar; Eberle, Michael A.; Tezak, Zivana; Lababidi, Samir; Truty, Rebecca; Asimenos, George; Funke, Birgit; Fleharty, Mark; Chapman, Brad A.; Salit, Marc; Zook, Justin M.
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Best practices for benchmarking germline small-variant calls in human genomes
err2019-03-11
err207
errOAAI
errKrusche, Peter; Trigg, Len; Boutros, Paul C.; Mason, Christopher E.; De La Vega, Francisco M.; Moore, Benjamin L.; Gonzalez-Porta, Mar; Eberle, Michael A.; Tezak, Zivana; Lababidi, Samir; Truty, Rebecca; Asimenos, George; Funke, Birgit; Fleharty, Mark; Chapman, Brad A.; Salit, Marc; Zook, Justin M.
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Bioconda: sustainable and comprehensive software distribution for the life sciences
err2018-07-02
err526
errOAAI
errGruening, Bjoern; Dale, Ryan; Sjoedin, Andreas; Chapman, Brad A.; Rowe, Jillian; Tomkins-Tinch, Christopher H.; Valieris, Renan; Koester, Johannes; Team, Bioconda
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Silencing of the Drosophila ortholog of SOX5 leads to abnormal neuronal development and behavioral impairment
err2017-02-10
err26
errOAAI
errLi, Airong; Hooli, Basavaraj; Mullin, Kristina; Tate, Rebecca E.; Bubnys, Adele; Kirchner, Rory; Chapman, Brad; Hofmann, Oliver; Hide, Winston; Tanzi, Rudolph E.
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Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities
err2016-11-05
err5
errOAAI
errLindstroem, Sara; Ablorh, Akweley; Chapman, Brad; Gusev, Alexander; Chen, Gary; Turman, Constance; Eliassen, A. Heather; Price, Alkes L.; Henderson, Brian E.; Le Marchand, Loic; Hofmann, Oliver; Haiman, Christopher A.; Kraft, Peter
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Validated structural variant detection with prioritisation of known cancer related changes
err2016-07-15
err0
PREAI
errAhdesmaki, Miika; Chapman, Brad; Luke, Sally; Carr, Hedley; Stetson, Daniel; Hofmann, Oliver; Johnson, Justin
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Improved clinical variant calling and HLA genotyping with GRCh38
err2016-07-15
err0
PREAI
errChapman, Brad; Meynert, Alison; Church, Deanna; Johnson, Justin; Hofmann, Oliver
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Optimizing the detection of subclonal somatic variants with VarDict
err2016-07-15
err0
PREAI
errLai, Zhongwu; Chapman, Brad; Ahdesmaki, Miika; Hofmann, Oliver; Johnson, Justin; Dry, Jonathan
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VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research
err2016-04-07
err608
errOAAI
errLai, Zhongwu; Markovets, Aleksandra; Ahdesmaki, Miika; Chapman, Brad; Hofmann, Oliver; McEwen, Robert; Johnson, Justin; Dougherty, Brian; Barrett, J. Carl; Dry, Jonathan R.
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Profiling cancer gene mutations in longitudinal epithelial ovarian cancer biopsies by targeted next-generation sequencing: a retrospective study
err2015-07-01
err43
errOAAI
errBeltrame, L.; Di Marino, M.; Fruscio, R.; Calura, E.; Chapman, B.; Clivio, L.; Sina, F.; Mele, C.; Iatropoulos, P.; Grassi, T.; Fotia, V.; Romualdi, C.; Martini, P.; Noris, M.; Paracchini, L.; Craparotta, I.; Petrillo, M.; Milani, R.; Perego, P.; Ravaggi, A.; Zambelli, A.; Ronchetti, E.; D'Incalci, M.; Marchini, S.
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Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
err2014-02-16
err578
errOAAI
errZook, Justin M.; Chapman, Brad; Wang, Jason; Mittelman, David; Hofmann, Oliver; Hide, Winston; Salit, Marc
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Targeted exome sequencing of suspected mitochondrial disorders
err2013-05-07
err148
errOAAI
errLieber, Daniel S.; Calvo, Sarah E.; Shanahan, Kristy; Slate, Nancy G.; Liu, Shangtao; Hershman, Steven G.; Gold, Nina B.; Chapman, Brad A.; Thorburn, David R.; Berry, Gerard T.; Schmahmann, Jeremy D.; Borowsky, Mark L.; Mueller, David M.; Sims, Katherine B.; Mootha, Vamsi K.
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Deep targeted sequencing of 12 breast cancer loci in 4,700 women across four different ethnicities.
err2013-04-01
err0
PREAI
errLindstroem, Sara; Chapman, Brad; Chen, Gary; Chen, Constance; Ablorh, Akweley; Le Marchand, Loic; Henderson, Brian; Hofmann, Oliver; Mirel, Daniel; Haiman, Christopher; Kraft, Peter
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Histone H3R2 Symmetric Dimethylation and Histone H3K4 Trimethylation Are Tightly Correlated in Eukaryotic Genomes
err2012-02-01
err81
errOAAI
errYuan, Chih-Chi; Matthews, Adam G. W.; Jin, Yi; Chen, Chang Feng; Chapman, Brad A.; Ohsumi, Toshiro K.; Glass, Karen C.; Kutateladze, Tatiana G.; Borowsky, Mark L.; Struhl, Kevin; Oettinger, Marjorie A.
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Toward interoperable bioscience data
err2012-01-27
err283
errOAAI
errSansone, Susanna-Assunta; Rocca-Serra, Philippe; Field, Dawn; Maguire, Eamonn; Taylor, Chris; Hofmann, Oliver; Fang, Hong; Neumann, Steffen; Tong, Weida; Amaral-Zettler, Linda; Begley, Kimberly; Booth, Tim; Bougueleret, Lydie; Burns, Gully; Chapman, Brad; Clark, Tim; Coleman, Lee-Ann; Copeland, Jay; Das, Sudeshna; de Daruvar, Antoine; de Matos, Paula; Dix, Ian; Edmunds, Scott; Evelo, Chris T.; Forster, Mark J.; Gaudet, Pascale; Gilbert, Jack; Goble, Carole; Griffin, Julian L.; Jacob, Daniel; Kleinjans, Jos; Harland, Lee; Haug, Kenneth; Hermjakob, Henning; Sui, Shannan J. Ho; Laederach, Alain; Liang, Shaoguang; Marshall, Stephen; McGrath, Annette; Merrill, Emily; Reilly, Dorothy; Roux, Magali; Shamu, Caroline E.; Shang, Catherine A.; Steinbeck, Christoph; Trefethen, Anne; Williams-Jones, Bryn; Wolstencroft, Katherine; Xenarios, Ioannis; Hide, Winston
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The genomic binding sites of a noncoding RNA
err2011-12-05
err388
errOAAI
errSimon, Matthew D.; Wang, Charlotte I.; Kharchenko, Peter V.; West, Jason A.; Chapman, Brad A.; Alekseyenko, Artyom A.; Borowsky, Mark L.; Kuroda, Mitzi I.; Kingston, Robert E.
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The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons
err2011-11-24
err17
errOAAI
errSui, Shannan J. Ho; Begley, Kimberly; Reilly, Dorothy; Chapman, Brad; McGovern, Ray; Rocca-Sera, Philippe; Maguire, Eamonn; Altschuler, Gabriel M.; Hansen, Terah A. A.; Sompallae, Ramakrishna; Krivtsov, Andrei; Shivdasani, Ramesh A.; Armstrong, Scott A.; Culhane, Aedin C.; Correll, Mick; Sansone, Susanna-Assunta; Hofmann, Oliver; Hide, Winston
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