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Alexandros Stamatakis

democritus university of thrace

76H-index
482Paper Count
9.8WCitation Count
Published Papers 74
Publication Date
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In situ microRaman spectroscopy as a screening tool for assessing human DNA preservation in ancient dental remains
errMicrochemical Journal
IF5.1
err2026-02-22
err0
errOAAI
errAggelos Philippidis; Angeliki Mamali; Victor Pinon; Despoina Vassou; Argyro Nafplioti; Eugenia Tabakaki; Nikos Poulakakis; Alexandros Stamatakis; Pavlos Pavlidis; Nikolaos Psonis; Demetrios Anglos
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Genetic affinities between the ancient Greek colony of Amvrakia and its metropolis
errGenome Biology
IF9.4
err2026-02-07
err1
PREAI
errPsonis, Nikolaos; Tabakaki, Eugenia; Vassou, Despoina; Papadantonakis, Stefanos; Souleles, Angelos; Nafplioti, Argyro; Kousis Tsampazis, Georgios; Papadopoulou, Angeliki; Xanthopoulos, Kiriakos; Panailidis, Panagiotis; Georgiadou, Angeliki; Papakosta, Dimitra; Koursioti, Sevasti; Evangelinou, Maria; Papadopoulou, Varvara; Evaggeloglou, Paraskevi; Korka, Elena; Christidis, Ioannis; Ioannou, Michael; Kontogianni, Theodora; Arkoumanis, Athanasios; Stamatakis, Alexandros; Poulakakis, Nikos; Papageorgopoulou, Christina; Pavlidis, Pavlos
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Bit-Reproducible Parallel Phylogenetic Tree Inference
errBioinformatics
IF5.4
err2026-01-30
err0
errOAAI
errChristoph Stelz; Lukas Hübner; Alexandros Stamatakis; null
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errSave
raxtax: a k-mer-based non-Bayesian taxonomic classifier
errBIOINFORMATICS
IF5.4
err2025-12-01
err0
errOAAI
errWahl, Noah A.; Koutsovoulos, Georgios; Bettisworth, Ben; Stamatakis, Alexandros
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errSave
Accelerating Maximum Likelihood Phylogenetic Inference via Early Stopping to Evade (Over-)optimization
errSYSTEMATIC BIOLOGY
IF5.7
err2025-09-01
err1
errOAAI
errTogkousidis, Anastasis; Stamatakis, Alexandros; Gascuel, Olivier
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errSave
Predicting Phylogenetic Bootstrap Values via Machine Learning
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2024-10-17
err1
errOAAI
errWiegert, Julius; Hoehler, Dimitri; Haag, Julia; Stamatakis, Alexandros
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Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2024-08-01
err1
PREAI
errKotsakiozi, Panayiota; Antoniou, Aglaia; Psonis, Nikolaos; Sagonas, Kostas; Karameta, Emmanouela; Ilgaz, Cetin; Kumlutas, Yusuf; Avci, Aziz; Jablonski, Daniel; Darriba, Diego; Stamatakis, Alexandros; Lymberakis, Petros; Poulakakis, Nikos
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Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution
errISME JOURNAL
IF10
err2024-07-13
err0
errOAAI
errWilliams, Tom A.; Davin, Adrian A.; Szantho, Lenard L.; Stamatakis, Alexandros; Wahl, Noah A.; Woodcroft, Ben J.; Soo, Rochelle M.; Eme, Laura; Sheridan, Paul O.; Gubry-Rangin, Cecile; Spang, Anja; Hugenholtz, Philip; Szollosi, Gergely J.
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Identification of the 18 World War II executed citizens of Adele, Rethymnon, Crete using an ancient DNA approach and low coverage genomes
errFORENSIC SCIENCE INTERNATIONAL-GENETICS
IF3.1
err2024-07-01
err0
PREAI
errPsonis, Nikolaos; Vassou, Despoina; Nafplioti, Argyro; Tabakaki, Eugenia; Pavlidis, Pavlos; Stamatakis, Alexandros; Poulakakis, Nikos
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errSave
Simulations of Sequence Evolution: How (Un)realistic They Are and Why
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2023-12-20
err4
errOAAI
errTrost, Johanna; Haag, Julia; Hoehler, Dimitri; Jacob, Laurent; Stamatakis, Alexandros; Boussau, Bastien
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errSave
Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2023-10-06
err6
errOAAI
errTogkousidis, Anastasis; Kozlov, Oleksiy M.; Haag, Julia; Hoehler, Dimitri; Stamatakis, Alexandros
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errSave
Parameter Estimation and Species Tree Rooting Using ALE and GeneRax
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2023-07-18
err4
errOAAI
errWilliams, Tom A.; Davin, Adrian A.; Morel, Benoit; Szantho, Lenard L.; Spang, Anja; Stamatakis, Alexandros; Hugenholtz, Philip; Szollosi, Gergely J.
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errSave
Lagrange-NG: The next generation of Lagrange
errSYSTEMATIC BIOLOGY
IF5.7
err2023-01-27
err0
errOAAI
errBettisworth, Ben; Smith, Stephen A.; Stamatakis, Alexandros
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errSave
Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean
errCURRENT BIOLOGY
IF7.5
err2023-01-01
err16
errOAAI
errKoptekin, Dilek; Yuncu, Eren; Rodriguez-Varela, Ricardo; Altinisxik, N. Ezgi; Psonis, Nikolaos; Kashuba, Natalia; Yorulmaz, Sevgi; George, Robert; Kazanci, Duygu Deniz; Kaptan, Damla; Gurun, Kanat; Vural, Kivilcim Basxak; Gemici, Hasan Can; Vassou, Despoina; Daskalaki, Evangelia; Karamurat, Cansu; Lagerholm, Vendela K.; Erdal, Omur Dilek; Kirdoek, Emrah; Marangoni, Aurelio; Schachner, Andreas; Ustundag, Handan; Shengelia, Ramaz; Bitadze, Liana; Elashvili, Mikheil; Stravopodi, Eleni; Ozbasxaran, Mihriban; Duru, Ganesx; Nafplioti, Argyro; Rose, C. Brian; Gencer, Tugba; Darbyshire, Gareth; Gavashelishvili, Alexander; Pitskhelauri, Konstantine; Cevik, Ozlem; Vurusxkan, Osman; Kyparissi-Apostolika, Nina; Bayakkarakaya, Ali Metin; Oguzhanoglu, Umay; Gunel, Sevinc; Tabakaki, Eugenia; Aliev, Akper; Ibrahimov, Anar; Shadlinski, Vaqif; Sampson, Adamantios; Kilinc, Gulsah Merve; Atakuman, Cigdem; Stamatakis, Alexandros; Poulakakis, Nikos; Erdal, Yilmaz Selim; Pavlidis, Pavlos; Stora, Jan; Ozer, Fasun; Goetherstroem, Anders; Somel, Mehmet
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From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2022-11-17
err21
errOAAI
errHaag, Julia; Hoehler, Dimitri; Bettisworth, Ben; Stamatakis, Alexandros
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errSave
CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data
errGENOME BIOLOGY
IF9.4
err2022-01-26
err31
errOAAI
errKozlov, Alexey; Alves, Joao M.; Stamatakis, Alexandros; Posada, David
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errSave
SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2022-01-11
err25
errOAAI
errMorel, Benoit; Schade, Paul; Lutteropp, Sarah; Williams, Tom A.; Szollosi, Gergely J.; Stamatakis, Alexandros
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errSave
SPART: A versatile and standardized data exchange format for species partition information
errMOLECULAR ECOLOGY RESOURCES
IF5.5
err2021-08-03
err7
errOAAI
errMiralles, Aurelien; Ducasse, Jacques; Brouillet, Sophie; Flouri, Tomas; Fujisawa, Tomochika; Kapli, Paschalia; Knowles, L. Lacey; Kumari, Sangeeta; Stamatakis, Alexandros; Sukumaran, Jeet; Lutteropp, Sarah; Vences, Miguel; Puillandre, Nicolas
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The wall lizards of the Balkan peninsula: Tackling questions at the interface of phylogenomics and population genomics
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2021-06-01
err10
errOAAI
errPsonis, Nikolaos; Antoniou, Aglaia; Karameta, Emmanouela; Darriba, Diego; Stamatakis, Alexandros; Lymberakis, Petros; Poulakakis, Nikos
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The SoftWipe tool and benchmark for assessing coding standards adherence of scientific software
errSCIENTIFIC REPORTS
IF3.9
err2021-05-11
err6
errOAAI
errZapletal, Adrian; Hoehler, Dimitri; Sinz, Carsten; Stamatakis, Alexandros
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Research Directions

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Co-authors
Cooperation Journals
P
Peer Bork
H-index: 233 · Papers: 948
王
王军 (Jun Wang)
H-index: 222 · Papers: 3.2K
W
Willem M. de Vos
H-index: 193 · Papers: 1.3K
P
Pamela S. Soltis
H-index: 193 · Papers: 1.5K
O
Oluf Pedersen
H-index: 164 · Papers: 1.3K
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