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Sean R. Eddy

Harvard University

90H-index
200Paper Count
14.2WCitation Count
Published Papers 42
Publication Date
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HMMER web server: 2026 update
errNucleic Acids Research
IF13.1
err2026-04-27
err0
errOAAI
errAleksandar Rajković; Martin Beracochea; Alexander B Rogers; Sean R Eddy; Nicholas P Carter; Robert D Finn
errShare
errSave
Presence of group II introns in phage genomes
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-08-28
err1
errOAAI
errMerk, Liana N.; Jones, Thomas A.; Eddy, Sean R.
errShare
errSave
Mixing genome annotation methods in a comparative analysis inflates the apparent number of lineage-specific genes
errCURRENT BIOLOGY
IF7.5
err2022-06-01
err36
errOAAI
errWeisman, Caroline M.; Murray, Andrew W.; Eddy, Sean R.
errShare
errSave
A computational screen for alternative genetic codes in over 250,000 genomes
errELIFE
IF0
err2021-11-09
err33
PREAI
errShulgina, Yekaterina; Eddy, Sean R.
errShare
errSave
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
errNUCLEIC ACIDS RESEARCH
IF13.1
err2020-11-19
err519
errOAAI
errKalvari, Ioanna; Nawrocki, Eric P.; Ontiveros-Palacios, Nancy; Argasinska, Joanna; Lamkiewicz, Kevin; Marz, Manja; Griffiths-Jones, Sam; Toffano-Nioche, Claire; Gautheret, Daniel; Weinberg, Zasha; Rivas, Elena; Eddy, Sean R.; Finn, Robert D.; Bateman, Alex; Petrov, Anton, I
errShare
errSave
A genetic, genomic, and computational resource for exploring neural circuit function
errELIFE
IF0
err2020-01-15
err146
errOAAI
errDavis, Fred P.; Nern, Aljoscha; Picard, Serge; Reiser, Michael B.; Rubin, Gerald M.; Eddy, Sean R.; Henry, Gilbert L.
errShare
errSave
Free circular introns with an unusual branchpoint in neuronal projections
errELIFE
IF0
err2019-11-07
err15
errOAAI
errSaini, Harleen; Bicknell, Alicia A.; Eddy, Sean R.; Moore, Melissa J.
errShare
errSave
The Pfam protein families database in 2019
errNUCLEIC ACIDS RESEARCH
IF13.1
err2018-10-24
err3.5K
errOAAI
errEl-Gebali, Sara; Mistry, Jaina; Bateman, Alex; Eddy, Sean R.; Luciani, Aurelien; Potter, Simon C.; Qureshi, Matloob; Richardson, Lorna J.; Salazar, Gustavo A.; Smart, Alfredo; Sonnhammer, Erik L. L.; Hirsh, Layla; Paladin, Lisanna; Piovesan, Damiano; Tosatto, Silvio C. E.; Finn, Robert D.
errShare
errSave
HMMER web server: 2018 update
errNUCLEIC ACIDS RESEARCH
IF13.1
err2018-06-14
err1.5K
errOAAI
errPotter, Simon C.; Luciani, Aurelien; Eddy, Sean R.; Park, Youngmi; Lopez, Rodrigo; Finn, Robert D.
errShare
errSave
Group I introns are widespread in archaea
errNUCLEIC ACIDS RESEARCH
IF13.1
err2018-05-18
err19
errOAAI
errNawrocki, Eric P.; Jones, Thomas A.; Eddy, Sean R.
errShare
errSave
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
errNUCLEIC ACIDS RESEARCH
IF13.1
err2017-11-03
err716
errOAAI
errKalvari, Ioanna; Argasinska, Joanna; Quinones-Olvera, Natalia; Nawrocki, Eric P.; Rivas, Elena; Eddy, Sean R.; Bateman, Alex; Finn, Robert D.; Petrov, Anton I.
errShare
errSave
Gene Evolution: Getting Something from Nothing
errCURRENT BIOLOGY
IF7.5
err2017-07-01
err19
errOAAI
errWeisman, Caroline M.; Eddy, Sean R.
errShare
errSave
Identification and Characterization of a Class of MALAT1-like Genomic Loci
errCELL REPORTS
IF6.9
err2017-05-01
err64
errOAAI
errZhang, Bin; Mao, Yuntao S.; Diermeier, Sarah D.; Novikova, Irina V.; Nawrocki, Eric P.; Jones, Tom A.; Lazar, Zsolt; Tung, Chang-Shung; Luo, Weijun; Eddy, Sean R.; Sanbonmatsu, Karissa Y.; Spector, David L.
errShare
errSave
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
errNATURE METHODS
IF32.1
err2016-11-07
err266
errOAAI
errRivas, Elena; Clements, Jody; Eddy, Sean R.
errShare
errSave
Epigenomic landscapes of retinal rods and cones
errELIFE
IF0
err2016-03-07
err113
errOAAI
errMo, Alisa; Luo, Chongyuan; Davis, Fred P.; Mukamel, Eran A.; Henry, Gilbert L.; Nery, Joseph R.; Urich, Mark A.; Picard, Serge; Lister, Ryan; Eddy, Sean R.; Beer, Michael A.; Ecker, Joseph R.; Nathans, Jeremy
errShare
errSave
The Pfam protein families database: towards a more sustainable future
errNUCLEIC ACIDS RESEARCH
IF13.1
err2015-12-15
err4.3K
errOAAI
errFinn, Robert D.; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Mistry, Jaina; Mitchell, Alex L.; Potter, Simon C.; Punta, Marco; Qureshi, Matloob; Sangrador-Vegas, Amaia; Salazar, Gustavo A.; Tate, John; Bateman, Alex
errShare
errSave
The Dfam database of repetitive DNA families
errNUCLEIC ACIDS RESEARCH
IF13.1
err2015-11-26
err467
errOAAI
errHubley, Robert; Finn, Robert D.; Clements, Jody; Eddy, Sean R.; Jones, Thomas A.; Bao, Weidong; Smit, Arian F. A.; Wheelers, Travis J.
errShare
errSave
Combinatorial DNA Rearrangement Facilitates the Origin of New Genes in Ciliates
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2015-09-02
err27
errOAAI
errChen, Xiao; Jung, Seolkyoung; Beh, Leslie Y.; Eddy, Sean R.; Landweber, Laura F.
errShare
errSave
Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
errNEURON
IF15
err2015-06-01
err569
errOAAI
errMo, Alisa; Mukamel, Eran A.; Davis, Fred P.; Luo, Chongyuan; Henry, Gilbert L.; Picard, Serge; Urich, Mark A.; Nery, Joseph R.; Sejnowski, Terrence J.; Lister, Ryan; Eddy, Sean R.; Ecker, Joseph R.; Nathans, Jeremy
errShare
errSave
HMMER web server: 2015 update
errNUCLEIC ACIDS RESEARCH
IF13.1
err2015-05-05
err758
errOAAI
errFinn, Robert D.; Clements, Jody; Arndt, William; Miller, Benjamin L.; Wheeler, Travis J.; Schreiber, Fabian; Bateman, Alex; Eddy, Sean R.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Elaine R. Mardis
H-index: 197 · Papers: 1.7K
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Joseph R. Ecker
H-index: 168 · Papers: 535
G
Gerald M. Rubin
H-index: 164 · Papers: 485
T
Terrence J. Sejnowski
H-index: 153 · Papers: 993
R
Richard Durbin
H-index: 149 · Papers: 465
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