James C. Gee - Publications, H-index & Citations

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James C. Gee

University of Pennsylvania

79H-index

598Paper Count

5.4WCitation Count

Published Papers 130

Publication Date

Adaptive Riemannian optimization for multi-scale diffeomorphic matching

Nature Communications

IF15.7

2026-06-09

OAAI

Rohit Jena; Pratik Chaudhari; James C. Gee

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Contusions bias cortical thickness estimates after traumatic brain injury: A TRACK-TBI study

neuroimage: clinical

IF0

2026-05-06

OAAI

Daniel Brennan; Andrea L.C. Schneider; Russell Taki Shinohara; Ramon Diaz-Arrastia; Philip A. Cook; James C. Gee; James J. Gugger

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Text-Image Co-Alignment for Weakly Supervised Polyp Segmentation

IEEE Transactions on Medical Imaging

IF9.8

2026-03-17

PREAI

Wenhui Huang; Zhen Pan; Xiaoyan Wang; Yedi Zhang; Jingzhen He; James C. Gee; Yuanjie Zheng

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Enrichment of patients with concomitant limbic-predominant age-related TDP-43 encephalopathy (LATE) on the Alzheimer's disease continuum using hippocampal volume

Alzheimer's & Dementia

IF0

2025-12-13

OAAI

Nidhi S. Mundada; Xueying Lyu; Christopher A. Brown; Niyousha Sadeghpour; Emily McGrew; Long Xie; Philip A. Cook; James Gee; Paul A. Yushkevich; Sandhitsu R. Das; David A. Wolk; for the Alzheimer's Disease Neuroimaging Initiative

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The ANTsX ecosystem for mapping the mouse brain

Nature Communications

IF15.7

2025-11-22

OAAI

Nicholas J. Tustison; Min Chen; Fae N. Kronman; Jeffrey T. Duda; Clare Gamlin; Mia G. Tustison; Michael Kunst; Rachel Dalley; Staci Sorenson; Quanxin Wang; Lydia Ng; Yongsoo Kim; James C. Gee

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Geometric Aging of the Thoracic Aorta: Insights From 2 Large Cohorts

HYPERTENSION

IF8.2

2025-11-01

PREAI

Beeche, Cameron A.; Tavolinejad, Hamed; Zhao, Bingxin; Segers, Patrick; Duda, Jeffrey T.; Gee, James; Witschey, Walter R.; Chirinos, Julio A.

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Evaluating acute image ordering for real-world patient cases via language model alignment with radiological guidelines

Communications Medicine

IF6.3

2025-08-04

OAAI

Michael S. Yao; Allison Chae; Piya Saraiya; Charles E. Kahn; Walter R. Witschey; James C. Gee; Hersh Sagreiya; Osbert Bastani

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Executive dysfunction relates to salience network desegregation in behavioural variant frontotemporal dementia

neuroimage clinical

IF0

2025-07-24

OAAI

Melanie A. Matyi; Hamsanandini Radhakrishnan; Christopher A. Olm; Jeffrey S. Phillips; Philip A. Cook; Emma Rhodes; James C. Gee; David J. Irwin; Corey T. McMillan; Lauren Massimo

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Deep implicit optimization enables robust learnable features for deformable image registration

MEDICAL IMAGE ANALYSIS

IF11.8

2025-07-01

OAAI

Jena, Rohit; Chaudhari, Pratik; Gee, James C.

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A concept-based interpretable model for the diagnosis of choroid neoplasias using multimodal data (vol 16, 3504, 2025)

NATURE COMMUNICATIONS

IF15.7

2025-05-12

OAAI

Wu, Yifan; Liu, Yang; Yang, Yue; Yao, Michael S.; Yang, Wenli; Shi, Xuehui; Yang, Lihong; Li, Dongjun; Liu, Yueming; Yin, Shiyi; Lei, Chunyan; Zhang, Meixia; Gee, James C.; Yang, Xuan; Wei, Wenbin; Gu, Shi

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A concept-based interpretable model for the diagnosis of choroid neoplasias using multimodal data

NATURE COMMUNICATIONS

IF15.7

2025-04-13

OAAI

Wu, Yifan; Liu, Yang; Yang, Yue; Yao, Michael S.; Yang, Wenli; Shi, Xuehui; Yang, Lihong; Li, Dongjun; Liu, Yueming; Yin, Shiyi; Lei, Chunyan; Zhang, Meixia; Gee, James C.; Yang, Xuan; Wei, Wenbin

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Cardiovascular magnetic resonance imaging traits associated with adverse right ventricular remodeling in repaired tetralogy of Fallot: A Single Center Outcomes Using cardiovascular magnetic resonance in Tetralogy of Fallot study

JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE

IF6.1

2025-02-01

OAAI

Thompson, Elizabeth W.; Dong, Ningiun J.; Kim, Jin-seo; Bhattaru, Abhijit; Vu, Phuong; Hu, Fengling; Shinohara, Russell T.; Swago, Sophia; Donnelly, Elizabeth; Zhang, Xuemei; Loth, Annefleur; Vuthuri, Lipika; Lanzilotta, Kristen; Whitehead, Kevin K.; Duda, Jeffrey; Gee, James; Almasy, Laura; Goldmuntz, Elizabeth; Fogel, Mark A.; Witschey, Walter R.

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Thoracic Aortic Three-Dimensional Geometry

PULSE

IF7.3

2025-01-27

OAAI

Beeche, Cameron; Dib, Marie-Joe; Zhao, Bingxin; Azzo, Joe David; Tavolinejad, Hamed; Maynard, Hannah; Duda, Jeffrey Thomas; Gee, James; Salman, Oday; Penn Medicine BioBank, Walter R.; Witschey, Walter R.; Chirinos, Julio

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Effective Structured Information Extraction from Chest Radiography Reports Using Open-Weights Large Language Models

RADIOLOGY

IF15.2

2025-01-01

PREAI

Gee, James C.; Yao, Michael S.

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AmyNet: a Novel Deep Learning Imaging Approach to Identify Incidental Myocardial Uptake Indicative of Cardiac Amyloidosis on Whole Body 99Tc-Bone Scintigraphy Imaging

CIRCULATION

IF38.6

2024-11-12

PREAI

Bhattaru, Abhijit; Rojulpote, Chaitanya; Vidula, Mahesh; Duda, Jeffrey; Thompson, Elizabeth; Swago, Sophia; Gee, James; Pieretti, Janice; Drachman, Brian; Dorbala, Sharmila; Witschey, Walter; Bravo, Paco

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CT imaging-derived phenotypes for abdominal muscle and their association with age and sex in a medical biobank

SCIENTIFIC REPORTS

IF3.9

2024-06-26

OAAI

Vu, Phuong T.; Chahine, Chantal; Chatterjee, Neil; MacLean, Matthew T.; Swago, Sophia; Bhattaru, Abhi; Thompson, Elizabeth W.; Ikhlas, Anooshey; Oteng, Edith; Davidson, Lauren; Tran, Richard; Hazim, Mohamad; Raghupathy, Pavan; Verma, Anurag; Duda, Jeffrey; Gee, James; Luks, Valerie; Gershuni, Victoria; Wu, Gary; Rader, Daniel; Sagreiya, Hersh; Witschey, Walter R.

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ANTsX neuroimaging-derived structural phenotypes of UK Biobank

SCIENTIFIC REPORTS

IF3.9

2024-04-17

OAAI

Tustison, Nicholas J.; Yassa, Michael A.; Rizvi, Batool; Cook, Philip A.; Holbrook, Andrew J.; Sathishkumar, Mithra T.; Tustison, Mia G.; Gee, James C.; Stone, James R.; Avants, Brian B.

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Greater white matter degeneration and lower structural connectivity in non-amnestic vs. amnestic Alzheimer's disease

FRONTIERS IN NEUROSCIENCE

IF3.2

2024-03-18

OAAI

Phillips, Jeffrey S.; Adluru, Nagesh; Chung, Moo K.; Radhakrishnan, Hamsanandini; Olm, Christopher A.; Cook, Philip A.; Gee, James C.; Cousins, Katheryn A. Q.; Arezoumandan, Sanaz; Wolk, David A.; McMillan, Corey T.; Grossman, Murray; Irwin, David J.

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Deep learning approach for automated segmentation of myocardium using bone scintigraphy single-photon emission computed tomography/computed tomography in patients with suspected cardiac amyloidosis

JOURNAL OF NUCLEAR CARDIOLOGY

IF2.7

2024-03-01

PREAI

Bhattaru, Abhijit; Rojulpote, Chaitanya; Vidula, Mahesh; Duda, Jeffrey; Maclean, Matthew T.; Swago, Sophia; Thompson, Elizabeth; Gee, James; Pieretti, Janice; Drachman, Brian; Cohen, Adam; Dorbala, Sharmila; Bravo, Paco E.; Witschey, Walter R.

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Tau maturation in the clinicopathological spectrum of Lewy body and Alzheimer's disease

ANNALS OF CLINICAL AND TRANSLATIONAL NEUROLOGY

IF3.9

2024-01-23

OAAI

Arezoumandan, Sanaz; Cousins, Katheryn A. Q.; Ohm, Daniel T.; Lowe, MaKayla; Chen, Min; Gee, James; Phillips, Jeffrey S.; McMillan, Corey T.; Luk, Kelvin C.; Deik, Andres; Spindler, Meredith A.; Tropea, Thomas F.; Weintraub, Daniel; Wolk, David A.; Grossman, Murray; Lee, Virginia; Chen-Plotkin, Alice S.; Lee, Edward B.; Irwin, David J.

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Research Directions