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William J. Murphy

University of California System

76H-index
256Paper Count
2.5WCitation Count
Published Papers 103
Publication Date
An ancient recombination desert is a speciation supergene in placental mammals
errNature
IF48.5
err2025-11-12
err0
PREAI
errNicole M. Foley; Richard G. Rasulis; Zoya Wani; Mayra N. Mendoza Cerna; Henrique V. Figueiró; Klaus Peter Koepfli; Terje Raudsepp; William J. Murphy
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Myeloid derived suppressor cell function is potentiated by interleukin 15 in vitro
err2025-11-01
err0
PREAI
errSholevar, Cyrus; Lammers, Marshall L.; Liu, Natalie; Purl, Megan; Zamora, Anthony Elston; Judge, Sean J.; Murphy, William J.; Canter, Robert
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Evidence of allogeneic directed anti-tumor effects by CAR T cells in xenogeneic modeling
err2025-11-01
err0
PREAI
errSheng, Michael K.; Vick, Logan V.; Collins, Craig P.; Firoz, Wahed A.; Nielsen, Ryan N.; Xiong, Ying; Zamora, Anthony Elston; Murphy, William J.; Loi, Kelly
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Near-gapless genome assemblies of the domestic cat (Felis silvestris catus) and the African serval (Leptailurus serval) derived from trio-binning
err2025-08-01
err1
PREAI
errHarris, Andrew J.; Raudsepp, Terje; Foley, Nicole M.; Warren, Wesley C.; Lyons, Leslie A.; Murphy, William J.
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A chromosome-scale fishing cat reference genome for the evaluation of potential germline risk variants
err2024-04-05
err1
errOAAI
errCarroll, Rachel A.; Rice, Edward S.; Murphy, William J.; Lyons, Leslie A.; Thibaud-Nissen, Francoise; Coghill, Lyndon M.; Swanson, William F.; Terio, Karen A.; Boyd, Tyler; Warren, Wesley C.
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Ancestry dynamics and trait selection in a cat breed
err2024-04-01
err2
errOAAI
errKaelin, Christopher B.; McGowan, Kelly A.; Hutcherson, Anthony D.; Delay, John M.; Li, Jeremiah H.; Kiener, Sarah; Jagannathan, Vidhya; Leeb, Tosso; Murphy, William J.; Barsh, Gregory S.
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The value of hybrid genomes: Building two highly contiguous reference genome assemblies to advance Canis genomic studies
err2024-02-28
err2
PREAI
errBredemeyer, Kevin R.; vonHoldt, Bridgett M.; Foley, Nicole M.; Childers, Isabella R.; Brzeski, Kristin E.; Murphy, William J.
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Karyotypic stasis and swarming influenced the evolution of viral tolerance in a species-rich bat radiation
err2024-02-01
err3
errOAAI
errFoley, Nicole M.; Harris, Andrew J.; Bredemeyer, Kevin R.; Ruedi, Manuel; Puechmaille, Sebastien J.; Teeling, Emma C.; Criscitiello, Michael F.; Murphy, William J.
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The genome of the black- footed cat: Revealing a rich natural history and urgent conservation priorities for small felids
err2024-01-02
err3
errOAAI
errYuan, Jiaqing; Kitchener, Andrew C.; Lackey, Laurie Bingaman; Sun, Ting; Jiangzuo, Qigao; Tuohetahong, Yilamujiang; Zhao, Le; Yang, Peng; Wang, Guiqiang; Huang, Chen; Wang, Jinhong; Hou, Wenhui; Liu, Yang; Chen, Wu; Mi, Da; Murphy, William J.; Li, Gang
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Extensive Phylogenomic Discordance and the Complex Evolutionary History of the Neotropical Cat Genus Leopardus
err2023-11-21
err4
errOAAI
errLescroart, Jonas; Bonilla-Sanchez, Alejandra; Napolitano, Constanza; Buitrago-Torres, Diana L.; Ramirez-Chaves, Hector E.; Pulido-Santacruz, Paola; Murphy, William J.; Svardal, Hannes; Eizirik, Eduardo
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The Lone Star Pioneer of Genomics: James E. Womack (March 30, 1941-August 13, 2023)
err2023-11-15
err0
errOAAI
errSkow, Loren C.; Threadgill, David W.; Seabury, Christopher M.; Murphy, William; O'Brien, Stephen J.
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Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution
err2023-11-02
err10
errOAAI
errBredemeyer, Kevin R.; Hillier, LaDeana; Harris, Andrew J.; Hughes, Graham M.; Foley, Nicole M.; Lawless, Colleen; Carroll, Rachel A.; Storer, Jessica M.; Batzer, Mark A.; Rice, Edward S.; Davis, Brian W.; Raudsepp, Terje; O'Brien, Stephen J.; Lyons, Leslie A.; Warren, Wesley C.; Murphy, William J.
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Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease
err2023-11-01
err9
errOAAI
errHoward-McCombe, Jo; Jamieson, Alexandra; Carmagnini, Alberto; Russo, Isa-Rita M.; Ghazali, Muhammad; Campbell, Ruairidh; Driscoll, Carlos; Murphy, William J.; Nowak, Carsten; O'Connor, Terry; Tomsett, Louise; Lyons, Leslie A.; Munoz-Fuentes, Violeta; Bruford, Michael W.; Kitchener, Andrew C.; Larson, Greger; Frantz, Laurent; Senn, Helen; Lawson, Daniel J.; Beaumont, Mark A.
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Limited historical admixture between European wildcats and domestic cats
err2023-11-01
err4
errOAAI
errJamieson, Alexandra; Carmagnini, Alberto; Howard-McCombe, Jo; Doherty, Sean; Hirons, Alexandra; Dimopoulos, Evangelos; Lin, Audrey T.; Allen, Richard; Anderson-Whymark, Hugo; Barnett, Ross; Batey, Colleen; Beglane, Fiona; Bowden, Will; Bratten, John; Cupere, Bea De; Drew, Ellie; Foley, Nicole M.; Fowler, Tom; Fox, Allison; Geigl, Eva-Maria; Gotfredsen, Anne Birgitte; Grange, Thierry; Griffiths, David; Gross, Daniel; Haruda, Ashleigh; Hjermind, Jesper; Knapp, Zoe; Lebrasseur, Ophelie; Librado, Pablo; Lyons, Leslie A.; Mainland, Ingrid; McDonnell, Christine; Munoz-Fuentes, Violeta; Nowak, Carsten; O'Connor, Terry; Peters, Joris; Russo, Isa-Rita M.; Ryan, Hannah; Sheridan, Alison; Sinding, Mikkel-Holger S.; Skoglund, Pontus; Swali, Pooja; Symmons, Robert; Thomas, Gabor; Jensen, Theis Zetner Trolle; Kitchener, Andrew C.; Senn, Helen; Lawson, Daniel; Driscoll, Carlos; Murphy, William J.; Beaumont, Mark; Ottoni, Claudio; Sykes, Naomi; Larson, Greger; Frantz, Laurent
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How genomic insights into the evolutionary history of clouded leopards inform their conservation
err2023-10-06
err4
errOAAI
errYuan, Jiaqing; Wang, Guiqiang; Zhao, Le; Kitchener, Andrew C.; Sun, Ting; Chen, Wu; Huang, Chen; Wang, Chen; Xu, Xiao; Wang, Jinhong; Lu, Huimeng; Xu, Lulu; Jiangzuo, Qigao; Murphy, William J.; Wu, Dongdong; Li, Gang
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An ASO therapy for Angelman syndrome that targets an evolutionarily conserved region at the start of the UBE3A-AS transcript
err2023-03-22
err31
errOAAI
errDindot, Scott, V; Christian, Sarah; Murphy, William J.; Berent, Allyson; Panagoulias, Jennifer; Schlafer, Annalise; Ballard, Johnathan; Radeva, Kamelia; Robinson, Ruth; Myers, Luke; Jepp, Thomas; Shaheen, Hillary; Hillman, Paul; Konganti, Kranti; Hillhouse, Andrew; Bredemeyer, Kevin R.; Black, Lauren; Douville, Julie; FIRE Consortium
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De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations
err2022-06-30
err18
errOAAI
errWang, Richard J.; Raveendran, Muthuswamy; Harris, R. Alan; Murphy, William J.; Lyons, Leslie A.; Rogers, Jeffrey; Hahn, Matthew W.
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Tree House Explorer: A Novel Genome Browser for Phylogenomics
err2022-06-14
err5
errOAAI
errHarris, Andrew J.; Foley, Nicole M.; Williams, Tiffani L.; Murphy, William J.
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An ancient haplotype containing antimicrobial peptide gene variants is associated with severe fungal skin disease in Persian cats
err2022-02-14
err10
errOAAI
errMyers, Alexandra N.; Lawhon, Sara D.; Diesel, Alison B.; Bradley, Charles W.; Hoffmann, Aline Rodrigues; Murphy, William J.
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Rapid Macrosatellite Evolution Promotes X-Linked Hybrid Male Sterility in a Feline Interspecies Cross
err2021-09-14
err11
errOAAI
errBredemeyer, Kevin R.; Seabury, Christopher M.; Stickney, Mark J.; McCarrey, John R.; VonHoldt, Bridgett M.; Murphy, William J.
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