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William J. Murphy

texas a&m university college station

76H-index
259Paper Count
2.5WCitation Count
Published Papers 106
Publication Date
Reference genomes and fossils revise bat family phylogeny and biogeography
errNature
IF48.5
err2026-09-23
err0
errOAAI
errAriadna E. Morales; Yan Liang; William R. Thomas; Evgeny V. Leushkin; Francisco X. Castellanos; Denis M. Larkin; Tom Brown; Bastian Fromm; Suzanne J. Hand; Zixia Huang; Graham M. Hughes; Matthew F. Jones; Burton K. Lim; Meike Mai; Eugene W. Myers; Martin Pippel; Sebastien J. Puechmaille; Nancy B. Simmons; Linelle Ann L. Abueg; Nadav Ahituv; Zahran A. AlAbdulsalam; Ine Alvarez van Tussenbroek; Dineilys V. Aparicio; Lina M. Arcila Hernández; Alexander Ben Hamadou; Petr Benda; Mark Blaxter; Alex V. Borisenko; Jorge Brocca; Nair Cabezón; Lucia Carbone; Jose I. Carvajal; Wharton O. Y. Chan; Paul Davis; Dina K. N. Dechmann; Annette Denzinger; Judith L. Eger; Seth J. Eiseb; David Enard; Mark D. Engstrom; Nicole M. Foley; Giulio Formenti; Jackson Fuller; Ismael Galván; Akshamal M. Gamage; Neil J. Gemmell; Joanne E. Gillum; Alejandro Gonzales-Irribarren; Mailyn A. Gonzalez; Steven M. Goodman; Jonathan Gray; Carola Greve; Michael W. Guernsey; Edgar G. Gutiérrez; Yelena Guttman; Michael Hackenberg; Elena Hilario; Leon Hilgers; Thomas W. Horsley; Melissa R. de Waal; Deirdre M. Jafferally; Erich D. Jarvis; Sahieda A. Joemratie; Mirjam Knörnschild; Jenna E. Kohles; Dimitrios-Georgios Kontopoulos; Bonhwang Koo; M. Elise Lauterbur; Michael Letko; Harris A. Lewin; Shenglin Liu; Darrell K. Lizamore; Brian D. Lloyd; Livia Loureiro; M. Cristina MacSwiney G; Yury V. Malovichko; Kirsty McCaffrey; Dominik W. Melville; Magdalena Meyer; William O. Mgoola; Matthieu Muffato; Vincent J. Munster; William J. Murphy; Martina Nagy; Nicolas Nesi; Kimberly A. Nevonen; Haris Nicolaou; Evans E. Nkrumah; Zacharias Norman; Brian P. O’Toole; Sarah H. Olson; Alain Ondzie; Bismark A. Opoku; Jorge Ortega; William S. Pearman; Francy J. Perez-Llanos; Kendra L. Phelps; Myrtani Pieri; Sarahjane Power; Maksym Prylutskyi; Paola Pulido-Santacruz; Guoying Qi; Bernal Rodríguez-Herrera; Danny Rojas; Indranee Roopsind; Stephen J. Rossiter; Constance Scharff; Tilman Schell; Stephanie N. Seifert; Fernando Simal; Pipat Soisook; Simone Sommer; Andrew Spalton; Emma L. Stone; Peter H. Sudmant; Sam Talbot; Robert M. Timm; Laura Uelze; Nathan S. Upham; Marek Uvizl; Peter Vallo; Juan M. Vazquez; Lin-Fa Wang; Linet C. Watson; Daniel Whitby; Sylke Winkler; York Winter; Laurel R. Yohe; Monika Zavodna; Ning Zhang; Huabin Zhao; David A. Ray; Sonja C. Vernes; Liliana M. Dávalos; Michael Hiller; Emma C. Teeling
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Phylogenomic discordance and ancestral variation in rapidly radiating felids
err2026-08-01
err0
PREAI
errYuan, Jiaqing; Jiangzuo, Qigao; Sun, Ting; Ren, Yandong; Zhou, Qianting; Zhao, Le; Sun, Chang; Jing, Haohao; Wang, Jinhong; Feng, Tuo; Lan, Wenxu; Chen, Wu; Murphy, William J.; Kitchener, Andrew C.; Li, Gang
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The Y Chromosome Is a Reliable Marker for Deep-Time Phylogenetic Inference
err2026-07-22
err0
errOAAI
errEmmarie P Alexander; Nicole M Foley; William J Murphy; null
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An ancient recombination desert is a speciation supergene in placental mammals
errNature
IF48.5
err2025-11-12
err0
PREAI
errNicole M. Foley; Richard G. Rasulis; Zoya Wani; Mayra N. Mendoza Cerna; Henrique V. Figueiró; Klaus Peter Koepfli; Terje Raudsepp; William J. Murphy
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Myeloid derived suppressor cell function is potentiated by interleukin 15 in vitro
err2025-11-01
err0
PREAI
errSholevar, Cyrus; Lammers, Marshall L.; Liu, Natalie; Purl, Megan; Zamora, Anthony Elston; Judge, Sean J.; Murphy, William J.; Canter, Robert
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Evidence of allogeneic directed anti-tumor effects by CAR T cells in xenogeneic modeling
err2025-11-01
err0
PREAI
errSheng, Michael K.; Vick, Logan V.; Collins, Craig P.; Firoz, Wahed A.; Nielsen, Ryan N.; Xiong, Ying; Zamora, Anthony Elston; Murphy, William J.; Loi, Kelly
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Near-gapless genome assemblies of the domestic cat (Felis silvestris catus) and the African serval (Leptailurus serval) derived from trio-binning
err2025-08-01
err1
PREAI
errHarris, Andrew J.; Raudsepp, Terje; Foley, Nicole M.; Warren, Wesley C.; Lyons, Leslie A.; Murphy, William J.
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A chromosome-scale fishing cat reference genome for the evaluation of potential germline risk variants
err2024-04-05
err1
errOAAI
errCarroll, Rachel A.; Rice, Edward S.; Murphy, William J.; Lyons, Leslie A.; Thibaud-Nissen, Francoise; Coghill, Lyndon M.; Swanson, William F.; Terio, Karen A.; Boyd, Tyler; Warren, Wesley C.
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Ancestry dynamics and trait selection in a cat breed
err2024-04-01
err2
errOAAI
errKaelin, Christopher B.; McGowan, Kelly A.; Hutcherson, Anthony D.; Delay, John M.; Li, Jeremiah H.; Kiener, Sarah; Jagannathan, Vidhya; Leeb, Tosso; Murphy, William J.; Barsh, Gregory S.
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The value of hybrid genomes: Building two highly contiguous reference genome assemblies to advance Canis genomic studies
err2024-02-28
err2
PREAI
errBredemeyer, Kevin R.; vonHoldt, Bridgett M.; Foley, Nicole M.; Childers, Isabella R.; Brzeski, Kristin E.; Murphy, William J.
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Karyotypic stasis and swarming influenced the evolution of viral tolerance in a species-rich bat radiation
err2024-02-01
err3
errOAAI
errFoley, Nicole M.; Harris, Andrew J.; Bredemeyer, Kevin R.; Ruedi, Manuel; Puechmaille, Sebastien J.; Teeling, Emma C.; Criscitiello, Michael F.; Murphy, William J.
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The genome of the black- footed cat: Revealing a rich natural history and urgent conservation priorities for small felids
err2024-01-02
err3
errOAAI
errYuan, Jiaqing; Kitchener, Andrew C.; Lackey, Laurie Bingaman; Sun, Ting; Jiangzuo, Qigao; Tuohetahong, Yilamujiang; Zhao, Le; Yang, Peng; Wang, Guiqiang; Huang, Chen; Wang, Jinhong; Hou, Wenhui; Liu, Yang; Chen, Wu; Mi, Da; Murphy, William J.; Li, Gang
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Extensive Phylogenomic Discordance and the Complex Evolutionary History of the Neotropical Cat Genus Leopardus
err2023-11-21
err4
errOAAI
errLescroart, Jonas; Bonilla-Sanchez, Alejandra; Napolitano, Constanza; Buitrago-Torres, Diana L.; Ramirez-Chaves, Hector E.; Pulido-Santacruz, Paola; Murphy, William J.; Svardal, Hannes; Eizirik, Eduardo
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The Lone Star Pioneer of Genomics: James E. Womack (March 30, 1941-August 13, 2023)
err2023-11-15
err0
errOAAI
errSkow, Loren C.; Threadgill, David W.; Seabury, Christopher M.; Murphy, William; O'Brien, Stephen J.
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Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution
err2023-11-02
err10
errOAAI
errBredemeyer, Kevin R.; Hillier, LaDeana; Harris, Andrew J.; Hughes, Graham M.; Foley, Nicole M.; Lawless, Colleen; Carroll, Rachel A.; Storer, Jessica M.; Batzer, Mark A.; Rice, Edward S.; Davis, Brian W.; Raudsepp, Terje; O'Brien, Stephen J.; Lyons, Leslie A.; Warren, Wesley C.; Murphy, William J.
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Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease
err2023-11-01
err9
errOAAI
errHoward-McCombe, Jo; Jamieson, Alexandra; Carmagnini, Alberto; Russo, Isa-Rita M.; Ghazali, Muhammad; Campbell, Ruairidh; Driscoll, Carlos; Murphy, William J.; Nowak, Carsten; O'Connor, Terry; Tomsett, Louise; Lyons, Leslie A.; Munoz-Fuentes, Violeta; Bruford, Michael W.; Kitchener, Andrew C.; Larson, Greger; Frantz, Laurent; Senn, Helen; Lawson, Daniel J.; Beaumont, Mark A.
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Limited historical admixture between European wildcats and domestic cats
err2023-11-01
err4
errOAAI
errJamieson, Alexandra; Carmagnini, Alberto; Howard-McCombe, Jo; Doherty, Sean; Hirons, Alexandra; Dimopoulos, Evangelos; Lin, Audrey T.; Allen, Richard; Anderson-Whymark, Hugo; Barnett, Ross; Batey, Colleen; Beglane, Fiona; Bowden, Will; Bratten, John; Cupere, Bea De; Drew, Ellie; Foley, Nicole M.; Fowler, Tom; Fox, Allison; Geigl, Eva-Maria; Gotfredsen, Anne Birgitte; Grange, Thierry; Griffiths, David; Gross, Daniel; Haruda, Ashleigh; Hjermind, Jesper; Knapp, Zoe; Lebrasseur, Ophelie; Librado, Pablo; Lyons, Leslie A.; Mainland, Ingrid; McDonnell, Christine; Munoz-Fuentes, Violeta; Nowak, Carsten; O'Connor, Terry; Peters, Joris; Russo, Isa-Rita M.; Ryan, Hannah; Sheridan, Alison; Sinding, Mikkel-Holger S.; Skoglund, Pontus; Swali, Pooja; Symmons, Robert; Thomas, Gabor; Jensen, Theis Zetner Trolle; Kitchener, Andrew C.; Senn, Helen; Lawson, Daniel; Driscoll, Carlos; Murphy, William J.; Beaumont, Mark; Ottoni, Claudio; Sykes, Naomi; Larson, Greger; Frantz, Laurent
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How genomic insights into the evolutionary history of clouded leopards inform their conservation
err2023-10-06
err4
errOAAI
errYuan, Jiaqing; Wang, Guiqiang; Zhao, Le; Kitchener, Andrew C.; Sun, Ting; Chen, Wu; Huang, Chen; Wang, Chen; Xu, Xiao; Wang, Jinhong; Lu, Huimeng; Xu, Lulu; Jiangzuo, Qigao; Murphy, William J.; Wu, Dongdong; Li, Gang
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An ASO therapy for Angelman syndrome that targets an evolutionarily conserved region at the start of the UBE3A-AS transcript
err2023-03-22
err31
errOAAI
errDindot, Scott, V; Christian, Sarah; Murphy, William J.; Berent, Allyson; Panagoulias, Jennifer; Schlafer, Annalise; Ballard, Johnathan; Radeva, Kamelia; Robinson, Ruth; Myers, Luke; Jepp, Thomas; Shaheen, Hillary; Hillman, Paul; Konganti, Kranti; Hillhouse, Andrew; Bredemeyer, Kevin R.; Black, Lauren; Douville, Julie; FIRE Consortium
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De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations
err2022-06-30
err18
errOAAI
errWang, Richard J.; Raveendran, Muthuswamy; Harris, R. Alan; Murphy, William J.; Lyons, Leslie A.; Rogers, Jeffrey; Hahn, Matthew W.
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