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J

Jonathan Warrell

yale university

51H-index
185Paper Count
2.6WCitation Count
Published Papers 17
Publication Date
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Transcriptomic and phenotypic convergence of neurodevelopmental disorder risk genes in vitro and in vivo
errNature Neuroscience
IF20
err2026-04-24
err0
errOAAI
errMeilin Fernandez Garcia; Kayla Retallick-Townsley; April Pruitt; Elizabeth A. Davidson; Novin Balafkan; Jonathan Warrell; Tzu-Chieh Huang; Alfred Kibowen; Zhiyuan Chu; Yi Dai; Sarah E. Fitzpatrick; Ran Meng; Annabel Sen; Sophie Cohen; Olivia Livoti; Suha Khan; Charlotte Becker; Andre Luiz Teles e Silva; Jenny Liu; Grace Dossou; Jen Cheung; Susanna Liu; Sadaf Ghorbani; P. J. Michael Deans; Marisa DeCiucis; Prashant Emani; Huanyao Gao; Hongying Shen; Mark Gerstein; Zuoheng Wang; Laura M. Huckins; Ellen J. Hoffman; Kristen Brennand
errShare
errSave
Interpretability and implicit model semantics in biomedicine and deep learning
errNature Machine Intelligence
IF23.9
err2026-03-23
err0
PREAI
errJonathan Warrell; Michael Gancz; Hussein Mohsen; Prashant Emani; Mark Gerstein
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errSave
Metabolic characterization of tumor-immune interactions by multiplexed immunofluorescence reveals spatial mechanisms of immunotherapy response in non-small cell lung carcinoma (NSCLC)
errNature Communications
IF15.7
err2026-02-03
err0
errOAAI
errJames Monkman; Aaron Kilgallon; Clara Lawler; Rafael Tubelleza; Thazin Nwe Aung; Jonathan H. Warrell; Ioannis Vathiotis; Ioannis P. Trontzas; Niki Gavrielatou; Nay Nwe Nyein Chan; Rotem Czertok; Shai Bookstein; Ken O’Byrne; Ettai Markovits; David L. Rimm; Arutha Kulasinghe
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errSave
Spatial signatures for predicting immunotherapy outcomes using multi-omics in non-small cell lung cancer
errNature Genetics
IF29
err2025-10-10
err0
errOAAI
errThazin N. Aung; James Monkman; Jonathan Warrell; Ioannis Vathiotis; Katherine M. Bates; Niki Gavrielatou; Ioannis P. Trontzas; Chin Wee Tan; Aileen I. Fernandez; Myrto Moutafi; Ken O’ Byrne; Kurt A. Schalper; Konstantinos Syrigos; Roy S. Herbst; Arutha Kulasinghe; David L. Rimm
errShare
errSave
A variational graph-partitioning approach to modeling protein liquid-liquid phase separation
errCELL REPORTS PHYSICAL SCIENCE
IF7.3
err2024-11-01
err0
errOAAI
errWang, Gaoyuan; Warrell, Jonathan; Zheng, Suchen; Gerstein, Mark
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errSave
Spatially Informed Gene Signatures for Response to Immunotherapy in Melanoma
errCLINICAL CANCER RESEARCH
IF10.2
err2024-06-05
err1
PREAI
errAung, Thazin N.; Warrell, Jonathan; Martinez-Morilla, Sandra; Gavrielatou, Niki; Vathiotis, Ioannis; Yaghoobi, Vesal; Kluger, Harriet M.; Gerstein, Mark; Rimm, David L.
errShare
errSave
Spatial-specific gene signatures to predict immunotherapy outcomes in lung cancer
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errAung, Thazin N.; Moutafi, Myrto; Trontzas, Ioannis; Kulasinghe, Arutha; Monkman, James; Gavrielatou, Niki; Vathiotis, Ioannis; Warrell, Jonathan H.; Rimm, David L.
errShare
errSave
Latent evolutionary signatures: a general framework for analysing music and cultural evolution
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2024-03-20
err0
errOAAI
errWarrell, Jonathan; Salichos, Leonidas; Gancz, Michael; Gerstein, Mark B.
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errSave
Genetic determination of regional connectivity in modelling the spread of COVID-19 outbreak for more efficient mitigation strategies
errSCIENTIFIC REPORTS
IF3.9
err2023-05-25
err0
errOAAI
errSalichos, Leonidas; Warrell, Jonathan; Cevasco, Hannah; Chung, Alvin; Gerstein, Mark
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errSave
Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH
errCELL REPORTS METHODS
IF4.5
err2021-09-01
err16
errOAAI
errSavulescu, Anca F.; Brackin, Robyn; Bouilhol, Emmanuel; Dartigues, Benjamin; Warrell, Jonathan H.; Pimentel, Mafalda R.; Beaume, Nicolas; Fortunato, Isabela C.; Dallongeville, Stephane; Boulle, Mikael; Soueidan, Hayssam; Agou, Fabrice; Schmoranzer, Jan; Olivo-Marin, Jean-Christophe; Franco, Claudio A.; Gomes, Edgar R.; Nikolski, Macha; Mhlanga, Musa M.
errShare
errSave
A new tool for technical standardization of the Ki67 immunohistochemical assay
errMODERN PATHOLOGY
IF5.5
err2021-07-01
err38
errOAAI
errAung, Thazin Nwe; Acs, Balazs; Warrell, Jonathan; Bai, Yalai; Gaule, Patricia; Martinez-Morilla, Sandra; Vathiotis, Ioannis; Shafi, Saba; Moutafi, Myrto; Gerstein, Mark; Freiberg, Benjamin; Fulton, Regan; Rimm, David L.
errShare
errSave
Quantum computing at the frontiers of biological sciences
errNATURE METHODS
IF32.1
err2021-01-04
err69
errOAAI
errEmani, Prashant S.; Warrell, Jonathan; Anticevic, Alan; Bekiranov, Stefan; Gandal, Michael; McConnell, Michael J.; Sapiro, Guillermo; Aspuru-Guzik, Alan; Baker, Justin T.; Bastiani, Matteo; Murray, John D.; Sotiropoulos, Stamatios N.; Taylor, Jacob; Senthil, Geetha; Lehner, Thomas; Gerstein, Mark B.; Harrow, Aram W.
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errSave
An integrative ENCODE resource for cancer genomics
errNATURE COMMUNICATIONS
IF15.7
err2020-07-29
err91
errOAAI
errZhang, Jing; Lee, Donghoon; Dhiman, Vineet; Jiang, Peng; Xu, Jie; McGillivray, Patrick; Yang, Hongbo; Liu, Jason; Meyerson, William; Clarke, Declan; Gu, Mengting; Li, Shantao; Lou, Shaoke; Xu, Jinrui; Lochovsky, Lucas; Ung, Matthew; Ma, Lijia; Yu, Shan; Cao, Qin; Harmanci, Arif; Yan, Koon-Kiu; Sethi, Anurag; Gursoy, Gamze; Schoenberg, Michael Rutenberg; Rozowsky, Joel; Warrell, Jonathan; Emani, Prashant; Yang, Yucheng T.; Galeev, Timur; Kong, Xiangmeng; Liu, Shuang; Li, Xiaotong; Krishnan, Jayanth; Feng, Yanlin; Rivera-Mulia, Juan Carlos; Adrian, Jessica; Broach, James R.; Bolt, Michael; Moran, Jennifer; Fitzgerald, Dominic; Dileep, Vishnu; Liu, Tingting; Mei, Shenglin; Sasaki, Takayo; Trevilla-Garcia, Claudia; Wang, Su; Wang, Yanli; Zang, Chongzhi; Wang, Daifeng; Klein, Robert J.; Snyder, Michael; Gilbert, David M.; Yip, Kevin; Cheng, Chao; Yue, Feng; Liu, X. Shirley; White, Kevin P.; Gerstein, Mark
errShare
errSave
Estimating growth patterns and driver effects in tumor evolution from individual samples
errNATURE COMMUNICATIONS
IF15.7
err2020-02-05
err16
errOAAI
errSalichos, Leonidas; Meyerson, William; Warrell, Jonathan; Gerstein, Mark
errShare
errSave
MACHINE LEARNING IN PSYCHIATRIC GENOMICS: INTEGRATING MULTIPLE LEVELS OF ANALYSIS THROUGH DEEP NETWORK MODELS
errEUROPEAN NEUROPSYCHOPHARMACOLOGY
IF6.7
err2019-10-01
err0
PREAI
errWarrell, Jonathan
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errSave
exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling
errCELL SYSTEMS
IF7.7
err2019-04-01
err110
errOAAI
errRozowsky, Joel; Kitchen, Robert R.; Park, Jonathan J.; Galeev, Timur R.; Diao, James; Warrell, Jonathan; Thistlethwaite, William; Subramanian, Sai L.; Milosavljevic, Aleksandar; Gerstein, Mark
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errSave
Filter-Based Mean-Field Inference for Random Fields with Higher-Order Terms and Product Label-Spaces
errINTERNATIONAL JOURNAL OF COMPUTER VISION
IF9.3
err2014-03-19
err51
PREAI
errVineet, Vibhav; Warrell, Jonathan; Torr, Philip H. S.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
M
M Snyder
H-index: 210 · Papers: 3.3K
M
Mark Gerstein
H-index: 191 · Papers: 1.2K
R
Roy S. Herbst
H-index: 134 · Papers: 1.3K
D
David L. Rimm
H-index: 134 · Papers: 1.5K
A
Alán Aspuru‐Guzik
H-index: 114 · Papers: 933
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