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J

Jacob Reimer

Baylor College of Medicine

38H-index
105Paper Count
7.9KCitation Count
Published Papers 29
Publication Date
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Designer indicators for two-photon recording of subthreshold voltage dynamics
errNature Methods
IF32.1
err2026-04-15
err0
PREAI
errMichelle A. Land; Mario Galdamez; Vincent Villette; Jun Zhu; Xiaoyu Lu; Mate Marosi; Shuyuan Yang; Gregory Foran; Alex J. McDonald; Xiaoyu Dong; Elsayed Zaabout; Haixin Liu; Zhuohe Liu; Kevin L. Colbert; Shujuan Lai; Matthew Shorey; Anthony S. G. Lourdiane; Annick Ayon; Jonathan Bradley; Caroline Mailhes-Hamon; Ryan G. Natan; Jian Zhong; Ryan Kroeger; Robert G. Law; Noura Hakam; Cameron L. Smith; Ming Hu; Shanii Tabb; Brice Bathellier; Barna Dudok; Na Ji; Laurent Bourdieu; Jacob Reimer; François St-Pierre
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errSave
Author Correction: Foundation model of neural activity predicts response to new stimulus types
errNature
IF48.5
err2026-04-08
err0
errOAAI
errEric Y. Wang; Paul G. Fahey; Zhuokun Ding; Stelios Papadopoulos; Kayla Ponder; Marissa A. Weis; Andersen Chang; Taliah Muhammad; Saumil Patel; Zhiwei Ding; Dat Tran; Jiakun Fu; Casey M. Schneider-Mizell; R. Clay Reid; Forrest Collman; Nuno Maçarico da Costa; Katrin Franke; Alexander S. Ecker; Jacob Reimer; Xaq Pitkow; Fabian H. Sinz; Andreas S. Tolias
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errSave
Statistics of natural scenes shape contextual modulation in the visual cortex
errNeuron
IF15
err2026-03-26
err0
errOAAI
errJiakun Fu; Suhas Shrinivasan; Luca Baroni; Zhuokun Ding; Paul G. Fahey; Paweł A. Pierzchlewicz; Nikos Karantzas; Kayla Ponder; Rachel Froebe; Lydia Ntanavara; Taliah Muhammad; Konstantin F. Willeke; Eric Wang; Zhiwei Ding; Dat Tran; Stelios Papadopoulos; Saumil Patel; Jacob Reimer; Alexander S. Ecker; Xaq Pitkow
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errSave
Conserved post-odor dynamics in the olfactory systems of mice and locusts
erriScience
IF4.1
err2026-03-16
err0
errOAAI
errElizabeth H. Moss; Doris Ling; Cameron L. Smith; Feiyang Deng; Ryan Kroeger; Jacob Reimer; Baranidharan Raman; Benjamin R. Arenkiel
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errSave
Functional bipartite invariance in mouse primary visual cortex receptive fields
errNature Neuroscience
IF20
err2026-02-25
err0
errOAAI
errZhiwei Ding; Dat Tran; Kayla Ponder; Zhuokun Ding; Rachel Froebe; Lydia Ntanavara; Paul G. Fahey; Erick Cobos; Luca Baroni; Maria Diamantaki; Eric Y. Wang; Andersen Chang; Stelios Papadopoulos; Jiakun Fu; Taliah Muhammad; Christos Papadopoulos; Santiago A. Cadena; Alexandros Evangelou; Konstantin Willeke; Fabio Anselmi; Sophia Sanborn; Jan Antolik; Emmanouil Froudarakis; Saumil Patel; Edgar Y. Walker; Jacob Reimer; Fabian H. Sinz; Alexander S. Ecker; Katrin Franke; Xaq Pitkow; Andreas S. Tolias
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errSave
The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex
errNature Neuroscience
IF20
err2025-07-28
err0
errOAAI
errAgnes L. Bodor; Casey M. Schneider-Mizell; Chi Zhang; Leila Elabbady; Alex Mallen; Andi Bergeson; Derrick Brittain; JoAnn Buchanan; Daniel J. Bumbarger; Rachel Dalley; Clare Gamlin; Emily Joyce; Daniel Kapner; Sam Kinn; Gayathri Mahalingam; Sharmishtaa Seshamani; Shelby Suckow; Marc Takeno; Russel Torres; Wenjing Yin; J. Alexander Bae; Manuel A. Castro; Sven Dorkenwald; Akhilesh Halageri; Zhen Jia; Chris Jordan; Nico Kemnitz; Kisuk Lee; Kai Li; Ran Lu; Thomas Macrina; Eric Mitchell; Shanka Subhra Mondal; Shang Mu; Barak Nehoran; Sergiy Popovych; William Silversmith; Nicholas L. Turner; Szi-chieh Yu; William Wong; Jingpeng Wu; Brendan Celii; Luke Campagnola; Stephanie C. Seeman; Tim Jarsky; Naixin Ren; Anton Arkhipov; Jacob Reimer; H. Sebastian Seung; R. Clay Reid; Forrest Collman; Nuno Maçarico da Costa
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errSave
Inhibitory specificity from a connectomic census of mouse visual cortex (vol 640, pg 448, 2025)
errNATURE
IF48.5
err2025-05-19
err0
errOAAI
errSchneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico
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Functional connectomics reveals general wiring rule in mouse visual cortex
errNATURE
IF48.5
err2025-04-09
err4
errOAAI
errDing, Zhuokun; Fahey, Paul G.; Papadopoulos, Stelios; Wang, Eric Y.; Celii, Brendan; Papadopoulos, Christos; Chang, Andersen; Kunin, Alexander B.; Tran, Dat; Fu, Jiakun; Ding, Zhiwei; Patel, Saumil; Ntanavara, Lydia; Froebe, Rachel; Ponder, Kayla; Muhammad, Taliah; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Yatsenko, Dimitri; Froudarakis, Emmanouil; Sinz, Fabian; Josic, Kresimir; Rosenbaum, Robert; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Walker, Edgar Y.; Pitkow, Xaq; Reimer, Jacob
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errSave
NEURD offers automated proofreading and feature extraction for connectomics
errNATURE
IF48.5
err2025-04-09
err5
errOAAI
errCelii, Brendan; Papadopoulos, Stelios; Ding, Zhuokun; Fahey, Paul G.; Wang, Eric; Papadopoulos, Christos; Kunin, Alexander B.; Patel, Saumil; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Yin, Wenjing; Xenes, Daniel; Kitchell, Lindsey M.; Rivlin, Patricia K.; Rose, Victoria A.; Bishop, Caitlyn A.; Wester, Brock; Froudarakis, Emmanouil; Walker, Edgar Y.; Sinz, Fabian; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Pitkow, Xaq; Tolias, Andreas S.; Reimer, Jacob
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An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex
errNATURE COMMUNICATIONS
IF15.7
err2025-04-09
err0
errOAAI
errWeis, Marissa A.; Papadopoulos, Stelios; Hansel, Laura; Lueddecke, Timo; Celii, Brendan; Fahey, Paul G.; Wang, Eric Y.; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Castro, Manuel A.; Collman, Forrest; da Costa, Nuno Macarico; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Reid, R. Clay; Schneider-Mizell, Casey M.; Seung, H. Sebastian; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reimer, Jacob; Berens, Philipp; Tolias, Andreas S.
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errSave
Inhibitory specificity from a connectomic census of mouse visual cortex
errNATURE
IF48.5
err2025-04-09
err6
errOAAI
errSchneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico
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errSave
Cortical acetylcholine dynamics are predicted by cholinergic axon activity and behavior state
errCELL REPORTS
IF6.9
err2024-10-01
err0
errOAAI
errNeyhart, Erin; Zhou, Na; Munn, Brandon R.; Law, Robert G.; Smith, Cameron; Mridha, Zakir H.; Blanco, Francisco A.; Li, Guochuan; Li, Yulong; Hu, Ming; Mcginley, Matthew J.; Shine, James M.; Reimer, Jacob
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Endobronchial Ultrasound for the Screening of Pulmonary Embolism in Patients with Suspected Lung Cancer: A Prospective Cohort Study
errRESPIRATION
IF3.8
err2023-07-27
err6
PREAI
errJuul, Amanda Dandanell; Laursen, Christian B.; Christophersen, Alice; Arshad, Arman; Luef, Stefan Moller; Panou, Vasiliki; Larsen, Julie Gellert; Reimer, Jacob; Paaby, Jens; Falster, Casper
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errSave
Binary and analog variation of synapses between cortical pyramidal neurons
errELIFE
IF0
err2022-11-16
err24
errOAAI
errDorkenwald, Sven; Turner, Nicholas L.; Macrina, Thomas; Lee, Kisuk; Lu, Ran; Wu, Jingpeng; Bodor, Agnes L.; Bleckert, Adam A.; Brittain, Derrick; Kemnitz, Nico; Silversmith, William M.; Ih, Dodam; Zung, Jonathan; Zlateski, Aleksandar; Tartavull, Ignacio; Yu, Szi-Chieh; Popovych, Sergiy; Wong, William; Castro, Manuel; Jordan, Chris S.; Wilson, Alyssa M.; Froudarakis, Emmanouil; Buchanan, JoAnn; Takeno, Marc M.; Torres, Russel; Mahalingam, Gayathri; Collman, Forrest; Schneider-Mizell, Casey M.; Bumbarger, Daniel J.; Li, Yang; Becker, Lynne; Suckow, Shelby; Reimer, Jacob; Tolias, Andreas S.; Macarico da Costa, Nuno; Reid, R. Clay; Seung, H. Sebastian
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errSave
Distinct organization of two cortico-cortical feedback pathways
errNATURE COMMUNICATIONS
IF15.7
err2022-10-27
err8
errOAAI
errShen, Shan; Jiang, Xiaolong; Scala, Federico; Fu, Jiakun; Fahey, Paul; Kobak, Dmitry; Tan, Zhenghuan; Zhou, Na; Reimer, Jacob; Sinz, Fabian; Tolias, Andreas S.
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errSave
Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator
errNEURON
IF15
err2020-08-01
err83
errOAAI
errShemesh, Or A.; Linghu, Changyang; Piatkevich, Kiryl D.; Goodwin, Daniel; Celiker, Orhan Tunc; Gritton, Howard J.; Romano, Michael F.; Gao, Ruixuan; Yu, Chih-Chieh (Jay); Tseng, Hua-An; Bensussen, Seth; Narayan, Sujatha; Yang, Chao-Tsung; Freifeld, Limor; Siciliano, Cody A.; Gupta, Ishan; Wang, Joyce; Pak, Nikita; Yoon, Young-Gyu; Ullmann, Jeremy F. P.; Guner-Ataman, Burcu; Noamany, Habiba; Sheinkopf, Zoe R.; Park, Won Min; Asano, Shoh; Keating, Amy E.; Trimmer, James S.; Reimer, Jacob; Tolias, Andreas S.; Bear, Mark F.; Tye, Kay M.; Han, Xue; Ahrens, Misha B.; Boyden, Edward S.
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The Visual Cortex in Context
errANNUAL REVIEW OF VISION SCIENCE
IF0
err2019-09-15
err48
errOAAI
errFroudarakis, Emmanouil; Fahey, Paul G.; Reimer, Jacob; Smirnakis, Stelios M.; Tehovnik, Edward J.; Tolias, Andreas S.
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errSave
Engineering a Less Artificial Intelligence
errNEURON
IF15
err2019-09-01
err109
PREAI
errSinz, Fabian H.; Pitkow, Xaq; Reimer, Jacob; Bethge, Matthias; Tolias, Andreas S.
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errSave
Follicle-stimulating hormone and luteinizing hormone increase Ca2+ in the granulosa cells of mouse ovarian follicles
errBIOLOGY OF REPRODUCTION
IF3
err2019-05-14
err18
errOAAI
errEgbert, Jeremy R.; Fahey, Paul G.; Reimer, Jacob; Owen, Corie M.; Evsikov, Alexei V.; Nikolaev, Viacheslav O.; Griesbeck, Oliver; Ray, Russell S.; Tolias, Andreas S.; Jaffe, Laurinda A.
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errSave
In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain
errNATURE METHODS
IF32.1
err2017-02-20
err418
errOAAI
errOuzounov, Dimitre G.; Wang, Tianyu; Wang, Mengran; Feng, Danielle D.; Horton, Nicholas G.; Cruz-Hernandez, Jean C.; Cheng, Yu-Ting; Reimer, Jacob; Tolias, Andreas S.; Nishimura, Nozomi; Xu, Chris
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Research Directions

No research directions
Co-authors
Cooperation Journals
K
Karl Deisseroth
H-index: 182 · Papers: 634
D
David A. McCormick
H-index: 109 · Papers: 279
M
Mark F. Bear
H-index: 105 · Papers: 398
E
Edward S. Boyden
H-index: 95 · Papers: 622
M
M. L. Roukes
H-index: 78 · Papers: 325
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