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NAR Genomics and Bioinformatics

IF2.8
论文数267
被引数
期刊论文 267
发表时间
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WasteFams: a database of protein families from global wastewater microbiomes全球废水微生物组蛋白质家族数据库
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-22
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deleteAlexandros Galaras; Iro N Chasapi; Eleni Aplakidou; Maria N Chasapi; Efthimia Lamari; Sophia Diplari; Ilias Georgakopoulos-Soares; Evangelos Karatzas; Fotis A Baltoumas; Nikos C Kyrpides; Georgios A Pavlopoulos; null
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ModCRElib: a standalone package to model cis-regulatory elementsModCRElib：一个用于模拟顺式调控元件的独立软件包
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-21
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deletePatrick Gohl; Oriol Fornes; Patricia M Bota; Alberto Meseguer; Jaume Bonet; Ruben Molina-Fernández; Joan Planas-Iglesias; Altair C Hernández; Oriol Gallego; Narcis Fernandez-Fuentes; Baldomero Oliva
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Cell DiffErential Expression by Pooling (CellDEEP) highlights issues in differential gene expression in scRNA-seq通过汇集进行细胞差异表达（CellDEEP）突出了单细胞RNA测序中差异基因表达的问题
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-21
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deleteYiyi Cheng; Toby Kettlewell; Ross F Laidlaw; Olympia M Hardy; Andrew McCluskey; Thomas D Otto; Domenico Somma
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MAJIQ V3: Scalable and accurate RNA splicing analysis with splicegraph algebra and improved intron retention modelingMAJIQ V3：基于剪接图代数和改进的内含子保留建模的可扩展且精确的RNA剪接分析
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-21
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deleteJoseph K Aicher; Barry Slaff; San Jewell; Matthew R Gazzara; Elizabeth J K Bhoj; Yoseph Barash; null
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Pan-cancer multi-omics analysis reveals upregulation of the POLE2 subunit of DNA polymerase epsilon and its associations with patient survival and cellular pathways beyond DNA replication泛癌种多组学分析揭示了DNA聚合酶ε的POLE2亚基的上调及其与患者生存和细胞通路（除DNA复制外）的关联
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-14
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deleteAlina Krasilia; Deepali Chaudhry; Iwona J Fijalkowska; Michal Dmowski
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Detect de novo expressed ORFs in transcriptomes with DESwoMAN使用DESwoMAN检测转录组中新生表达的ORFs
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-07
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deleteAnna Grandchamp; Marie Lebherz; Elias Dohmen
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Nanopore sequencing combined with adaptive sampling and NanoExpansion enables accurate characterization of repeat expansion disorders纳米孔测序结合自适应采样和NanoExpansion技术，实现了对重复序列扩展障碍的精确表征
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-06
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deleteLuca Morandi; Francesco Casadei; Sara De Fanti; Luigi Bonan; Francesco Ravaioli; Flavia Palombo; Alessia Fiorentino; Silvia de Pasqua; Veria Vacchiano; Patrizia Avoni; Giovanni Rizzo; Sabina Capellari; Edoardo Ruggeri; Vincenzo Donadio; Gastone Castellani; Maria Giulia Bacalini; Raffaele Lodi; Rocco Liguori; Valerio Carelli; Caterina Tonon; null
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Integrating network medicine and foundation models reveals cell-type-specific regulatory alterations in Alzheimer’s disease整合网络医学和基础模型揭示了阿尔茨海默病中细胞类型特异的调控改变
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-10-06
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deleteAndrea Álvarez-Pérez; Alejandro Rodríguez-González; Jan Baumbach; Lucía Prieto-Santamaría; Mhaned Oubounyt
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Characterization of immunoglobulin loci in Pongo abelii and Pongo pygmaeus: Insights from multi-genome annotation and IMGT-based curation猩猩属（Pongo abelii和Pongo pygmaeus）免疫球蛋白基因座表征：多基因组注释和IMGT数据库基础上的筛选研究
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-28
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deleteShamsa Batool; Guilhem Zeitoun; Chahrazed Debbagh; Boutayna Dhioui; Géraldine Folch; Joumana Jabado-Michaloud; Véronique Giudicelli; Sofia Kossida
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Automated GenePy gene-burden computation via a reproducible Nextflow workflow integrated with the Genomics England (GEL) Lifebit platform通过可重复的Nextflow工作流与Genomics England (GEL) Lifebit平台集成实现的GenePy基因负担自动计算
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-28
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deleteIman Nazari; Guo Cheng; James Ashton; Sarah Ennis
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Unlocking cis-regulatory landscapes across 500 million years of evolution and disease mechanisms揭示跨越5亿年进化和疾病机制的顺式调控景观
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-15
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deleteTássia Mangetti Gonçalves; Casey L Stewart; Samantha D Baxley; Jason Xu; Kevin Boyer; Bijesh George; Daofeng Li; Chengran Yang; Harrison W Gabel; Xianhua Piao; Carlos Cruchaga; Yang E Li; Ting Wang; Oshri Avraham; Guoyan Zhao
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Customizable host and viral transcript enrichment using CRISPR–Cas9 long-read sequencing for characterization of low-to-moderate abundance isoforms利用CRISPR–Cas9长读长测序技术实现宿主和病毒转录本的可定制富集，以表征低至中等丰度的异构体
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-15
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deleteAn N T Nguyen; Jianshu Zhang; Shuxin Zhang; Miranda E Pitt; Devika Ganesamoorthy; Svenja Fritzlar; Jessie J -Y Chang; Sarah L Londrigan; Lachlan J M Coin
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FANTASIA suite: a reproducible and configurable framework for embedding-based functional annotation of proteinsFANTASIA套件：一种用于基于嵌入的功能蛋白注释的可重复且可配置的框架
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-11
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deleteFrancisco M Pérez-Canales; Àlex Domínguez-Rodríguez; Belén Carbonetto; Rosa Fernández; Ildefonso Cases; Ana M Rojas; null
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Long-read based detection of large copy number variants with potential functional significance using the ContextSV structural variant caller基于长读长的潜在功能意义大型拷贝数变异检测，使用ContextSV结构变异检测器
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-09
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deleteJonathan Elliot Perdomo; Mian Umair Ahsan; Jasmine Akoto; James Bauer; Naiara Akizu; Kai Wang
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VicMAG, an open-source tool for visualizing circular metagenome-assembled genomes highlighting bacterial virulence and antimicrobial resistanceVicMAG，一种用于可视化环形宏基因组组装基因组的开源工具，突出显示细菌毒力和抗菌耐药性
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-08
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deleteYusuke Tsuda; Yasuhiro Tanizawa; Thi My Hanh Vu; Yosuke Nishimura; Masaki Shintani; Haruka Abe; Futoshi Hasebe; Ikuro Kasuga; Miki Nagao; Masato Suzuki
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Identifying fundamental gaps in functional metagenomics: a step towards unlocking microbiome research potential识别功能宏基因组学中的基本差距：迈向解锁微生物组研究潜力的关键一步
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-08
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deleteSumeet K Tiwari; Andrea Telatin; Dipali Singh; null
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LAMBDA: a prophage detection benchmark for genomic language modelsLAMBDA：一种用于基因组语言模型的噬菌体检测基准
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-08
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deleteLeAnn M Lindsey; Nicole L Pershing; Keith Dufault-Thompson; Ho-jin Gwak; Anisa Habib; Aaron Schindler; Arjun Rakheja; June L Round; W Zac Stephens; Anne J Blaschke; Hari Sundar; Xiaofang Jiang
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SURE-Pipe: a pipeline to compare genomes and extract shared and unique regionsSURE-Pipe：一种用于比较基因组并提取共享和独特区域的流程
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-07
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deleteInfant Thomas; Abhishek B Kannur; Arya Sudheer; Debyani Samantray; Akshay Pramod Ware; Budheswar Dehury; Sandipan Chakraborty; Bobby Paul
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Proportionality-based association metrics in count compositional data基于比例性的计数组合数据关联度量
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-04
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deleteKevin McGregor; Nneka Okaeme; Reihane Khorasaniha; Simona Veniamin; Juan Jovel; Richard Miller; Ramsha Mahmood; Morag Graham; Christine Bonner; Charles N Bernstein; Douglas L Arnold; Amit Bar-Or; Ruth Ann Marrie; Julia O’Mahony; Eluen Ann Yeh; Yinshan Zhao; Brenda Banwell; Emmanuelle Waubant; Natalie Knox; Gary Van Domselaar; Feng Zhu; Ali I Mirza; Helen Tremlett; Heather Armstrong
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Scalable joint non-negative matrix factorization for paired single cell gene expression and chromatin accessibility data可扩展的联合非负矩阵分解方法用于配对的单细胞基因表达和染色质可及性数据
deleteNAR Genomics and Bioinformatics
IF2.8
delete2026-09-03
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deleteWilliam Morgans; Andrew D Sharrocks; Mudassar Iqbal
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