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Bioinformatics Advances

IF2.8
论文数131
被引数
期刊论文 131
发表时间
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memod-s: a standardised workflow to explore and analyse prokaryotic methylation patterns for Nanopore sequencing dataMemod-s：一种用于探索和分析原核生物甲基化模式的Nanopore测序数据标准化工作流程
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deleteMarotta, Alessia; Doni, Lapo; Avesani, Alessia; Passeri, Iacopo; Fagorzi, Camilla; Mengoni, Alessio; Martinez-Urtaza, Jaime; Batista, Frederico M.; Vezzulli, Luigi; Bosi, Emanuele
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Sketchbook: logical model inference from Boolean network sketches草图簿：从布尔网络草图进行逻辑模型推理
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deleteHuvar, Ondrej; Benes, Nikola; Brim, Lubos; Pastva, Samuel; Safranek, David
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CanDrivR-CS: a cancer-specific machine learning framework for distinguishing recurrent and rare variantsCanDrivR-CS：一种用于区分复发和稀有变异的癌症特异性机器学习框架
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deleteFrancis, Amy; Campbell, Colin; Gaunt, Tom R.
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Benchmarking methods for genome annotation using nanopore direct RNA in a non-model crop plant使用纳米孔直接RNA对非模式作物植物进行基因组注释的基准测试方法
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deleteDavis, Jade M.; Gagalova, Kristina K.; Sanglard, Lilian M. V. P.; Cuellar, Sabrina; Gibberd, Mark R.; Naim, Fatima
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Cell type annotation using large language models (LLMs) and CytoAnalyst使用大型语言模型（LLMs）和CytoAnalyst进行细胞类型注释
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deleteNguyen, Khoi; Tran, Duy; Nguyen, Phuong; Ro, Seungil; Bya, Phi; Nguyen, Tin
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Sigscores: summary scores for molecular signatures in RSigscores：R语言中分子特征汇总评分
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deleteBarberis, Alessandro; Buffa, Francesca M.
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Vector semantics of multidomain protein architectures多域蛋白质结构的空间语义
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deleteCui, Xiaoyue; Xiao, Yuting; Stolzer, Maureen; Durand, Dannie
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Integrative analysis and imputation of multiple data streams via deep Gaussian processes基于深度高斯过程的多种数据流整合分析与基因分型
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deleteSeptiandri, Ali A.; Ming, Deyu; DiazDelao, Francisco Alejandro; Jendoubi, Takoua; Ray, Samiran
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DCGAT-DTI: dynamic cross-graph attention network for drug-target interaction predictionDCGAT-DTI：用于药物-靶点相互作用预测的动态交叉图注意力网络
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deleteAbir, Abrar Rahman; Alif, Muhtasim Noor; Zhang, Wencai; Ahmed, Khandakar Tanvir; Zhang, Wei
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Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation赋能生物知识库：人机协同AI驱动的文献整理进展
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deleteWood, Valerie; Jeffryes, Matt; Green, Andrew F.; Blum, Matthias; Orchard, Sandra; Panni, Simona; Quaglia, Federica; Rodriguez-Esteban, Raul; Seager, James; Tosatto, Silvio C. E.; Wittig, Ulrike; Harrison, Melissa
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Graph convolutional networks for inferring cell-cell communication from spatial transcriptomics data基于空间转录组学数据的图卷积网络用于推断细胞间通讯
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deleteKouznetsov, Roman; Loper, Jackson; Regier, Jeffrey
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m6AnetAnalyzer: an R toolkit for post-processing of m6A sites detected by m6Anetm6AnetAnalyzer: 一个用于m6Anet检测的m6A位点后处理的R工具包
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deleteLee, Hanna; Gashi, Denalda; Batool, Syeda Maheen; Escobedo, Ana K.; Petti, Allegra A.; Carter, Bob S.; Balaj, Leonora
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OMAnnotator: a novel approach to building an annotated consensus genome sequenceOMAnnotator：构建注释共识基因组序列的一种新方法
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deleteBates, Sade; Dessimoz, Christophe; Nevers, Yannis
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DeepCE: a deep learning framework for correlation-enhanced gene regulatory network inference in single-cell RNA sequencing dataDeepCE：一种用于单细胞RNA测序数据中相关性增强型基因调控网络推断的深度学习框架
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deleteWu, Qianqian; Dai, Xingmiao; Lou, Shiyi; Wu, Siyuan; Tian, Tianhai
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GenomeDepot: data management system for microbial comparative genomicsGenomeDepot：微生物比较基因组学的数据管理系统
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deleteKazakov, Alexey; Deutschbauer, Adam M.
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GeneSNAKE: a Python package for simulation of gene regulatory networks and perturbation-induced expression dataGeneSNAKE：一个用于基因调控网络模拟和扰动诱导表达数据模拟的Python软件包
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deleteHillerton, Thomas; Bjork, Anton; Lundqvist, Nils; Zhivkoplias, Erik K.; Garbulowski, Mateusz; Sonnhammer, Erik L. L.
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parsomics: a data-driven framework for metagenomics data integration powered by a local relational database帕斯组学：一种由本地关系数据库驱动的宏基因组数据整合的数据驱动框架
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deletede Azevedo, Pedro Sader; Vedovatto, Meiski Maria; de Freitas, Pedro Coelho Gimenes; Luz, Rafaela Beatriz Silva; Streit, Rodrigo Silva Araujo; Persinoti, Gabriela Felix
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A network-guided penalized regression with application to proteomics data网络引导的惩罚回归及其在蛋白质组学数据中的应用
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deleteAhn, Seungjun; Oh, Eun Jeong
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Sparse dimensionality reduction for analyzing single-cell-resolved interactions (vol 6, vbag047, 2026)稀疏降维方法用于分析单细胞分辨率的相互作用 (vol 6, vbag047, 2026)
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deleteBrunn, Niklas; Hackenberg, Maren; Fullio, Camila L.; Vogel, Tanja; Binder, Harald
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Advancing understanding of long COVID pathophysiology through quantum walk-based network analysis通过量子行走网络分析推进对长新冠病理生理学的理解
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deletePark, Jaesub; Hwang, Woochang; Lee, Seokjun; Lee, Hyun Chang; Macmahon, Meabh; Zilbauer, Matthias; Han, Namshik
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