Ryan E. Mills - Publications, H-index & Citations

Ryan E. Mills

University of Michigan

54H指数

191论文数

4.1W被引数

收录论文 48

发表时间

Author Correction: Complex genetic variation in nearly complete human genomes 作者更正：近完整人类基因组中的复杂遗传变异

Nature

IF48.5

2025-08-26

OAAI

Glennis A. Logsdon; Peter Ebert; Peter A. Audano; Mark Loftus; David Porubsky; Jana Ebler; Feyza Yilmaz; Pille Hallast; Timofey Prodanov; DongAhn Yoo; Carolyn A. Paisie; William T. Harvey; Xuefang Zhao; Gianni V. Martino; Mir Henglin; Katherine M. Munson; Keon Rabbani; Chen-Shan Chin; Bida Gu; Hufsah Ashraf; Stephan Scholz; Olanrewaju Austine-Orimoloye; Parithi Balachandran; Marc Jan Bonder; Haoyu Cheng; Zechen Chong; Jonathan Crabtree; Mark Gerstein; Lisbeth A. Guethlein; Patrick Hasenfeld; Glenn Hickey; Kendra Hoekzema; Sarah E. Hunt; Matthew Jensen; Yunzhe Jiang; Sergey Koren; Youngjun Kwon; Chong Li; Heng Li; Jiaqi Li; Paul J. Norman; Keisuke K. Oshima; Benedict Paten; Adam M. Phillippy; Nicholas R. Pollock; Tobias Rausch; Mikko Rautiainen; Yuwei Song; Arda Söylev; Arvis Sulovari; Likhitha Surapaneni; Vasiliki Tsapalou; Weichen Zhou; Ying Zhou; Qihui Zhu; Michael C. Zody; Ryan E. Mills; Scott E. Devine; Xinghua Shi; Michael E. Talkowski; Mark J. P. Chaisson; Alexander T. Dilthey; Miriam K. Konkel; Jan O. Korbel; Charles Lee; Christine R. Beck; Evan E. Eichler; Tobias Marschall

Complex genetic variation in nearly complete human genomes 几乎完整的人类基因组中的复杂遗传变异

Nature

IF48.5

2025-07-23

OAAI

The Somatic Mosaicism across Human Tissues Network 人体组织网络中的体细胞镶嵌

Nature

IF48.5

2025-07-02

PREAI

Tim H. H. Coorens; Ji Won Oh; Yujin Angelina Choi; Nam Seop Lim; Boxun Zhao; Adam Voshall; Alexej Abyzov; Lucinda Antonacci-Fulton; Samuel Aparicio; Kristin G. Ardlie; Thomas J. Bell; James T. Bennett; Bradley E. Bernstein; Thomas G. Blanchard; Alan P. Boyle; Jason D. Buenrostro; Kathleen H. Burns; Fei Chen; Rui Chen; Sangita Choudhury; Harsha V. Doddapaneni; Evan E. Eichler; Gilad D. Evrony; Melissa A. Faith; Thomas G. Fazzio; Robert S. Fulton; Manuel Garber; Nils Gehlenborg; Soren Germer; Gad Getz; Richard A. Gibbs; Raquel G. Hernandez; Fulai Jin; Jan O. Korbel; Dan A. Landau; Heather A. Lawson; Niall J. Lennon; Heng Li; Yan Li; Po-Ru Loh; Gabor Marth; Michael J. McConnell; Ryan E. Mills; Stephen B. Montgomery; Pradeep Natarajan; Peter J. Park; Rahul Satija; Fritz J. Sedlazeck; Diane D. Shao; Hui Shen; Andrew B. Stergachis; Hunter R. Underhill; Alexander E. Urban; Melissa W. VonDran; Christopher A. Walsh; Ting Wang; Tao P. Wu; Chenghang Zong; Eunjung Alice Lee; Flora M. Vaccarino

Long Noncoding RNAs Expressed in Mouse Pituitary Development and Mature Hormone-Producing Cells 在小鼠垂体发育和成熟激素产生细胞中表达的长链非编码rna

ENDOCRINOLOGY

IF3.3

2024-11-02

OAAI

Brinkmeier, Michelle Lynn; George, Akima Semone; Cheung, Leonard Yan Ming; Mills, Ryan Edward; Melamed, Philippa; Camper, Sally Ann

Mapping recurrent mosaic copy number variation in human neurons

NATURE COMMUNICATIONS

IF15.7

2024-05-17

OAAI

Sun, Chen; Kathuria, Kunal; Emery, Sarah B.; Kim, ByungJun; Burbulis, Ian E.; Shin, Joo Heon; Weinberger, Daniel R.; Moran, John V.; Kidd, Jeffrey M.; Mills, Ryan E.; McConnell, Michael J.; Gleeson, Joseph G.; Breuss, Martin W.; Yang, Xiaoxu; Antaki, Danny; Chung, Changuk; Averbuj, Dan; Ball, Laurel L.; Roy, Subhojit; Mathern, Gary; Walsh, Christopher A.; Lee, Alice; Huang, August Yue; D'Gama, Alissa; Dias, Caroline; Maury, Eduardo; Ganz, Javier; Lodato, Michael; Miller, Michael; Li, Pengpeng; Rodin, Rachel; Borges-Monroy, Rebeca; Hill, Robert; Bizzotto, Sara; Khoshkhoo, Sattar; Kim, Sonia; Zhou, Zinan; Park, Peter J.; Barton, Alison; Galor, Alon; Chu, Chong; Bohrson, Craig; Gulhan, Doga; Lim, Elaine; Lim, Euncheon; Melloni, Giorgio; Cortes, Isidro; Lee, Jake; Luquette, Joe; Yang, Lixing; Sherman, Maxwell; Coulter, Michael; Kwon, Minseok; Lee, Semin; Lee, Soo; Viswanadham, Vinary; Dou, Yanmei; Chess, Andrew J.; Jones, Attila; Rosenbluh, Chaggai; Akbarian, Schahram; Langmead, Ben; Thorpe, Jeremy; Cho, Sean; Abyzov, Alexej; Bae, Taejeong; Jang, Yeongjun; Wang, Yifan; Molitor, Cindy; Peters, Mette; Gage, Fred H.; Wang, Meiyan; Reed, Patrick; Linker, Sara; Urban, Alexander; Zhou, Bo; Pattni, Reenal; Zhu, Xiaowei; Serres Amero, Aitor; Juan, David; Povolotskaya, Inna; Lobon, Irene; Solis Moruno, Manuel; Garcia Perez, Raquel; Marques-Bonet, Tomas; Soriano, Eduardo; Moran, John V.; Sun, Chen; Flasch, Diane A.; Frisbie, Trenton J.; Kopera, Huira C.; Kidd, Jeffrey M.; Moldovan, John B.; Kwan, Kenneth Y.; Mills, Ryan E.; Emery, Sarah B.; Zhou, Weichen; Zhao, Xuefang; Ratan, Aakrosh; Vaccarino, Flora M.; Cherskov, Adriana; Jourdon, Alexandre; Fasching, Liana; Sestan, Nenad; Pochareddy, Sirisha; Scuder, Soraya

HPV integration events are heterogenous, clonally selected and associated with spatially distinct transcriptomic profiles in aggressive HPV positive oropharyngeal squamous cell carcinoma

CANCER RESEARCH

IF16.6

2023-04-14

PREAI

Gu, Wenjin; Bhangale, Apurva; Brummel, Collin V.; Gensterblum-Miller, Elizabeth; Spector, Matthew E.; Mills, Ryan E.; Brenner, Chad

Analysis of Human Papilloma Virus Content and Integration in Mucoepidermoid Carcinoma

VIRUSES-BASEL

IF3.5

2022-10-26

OAAI

Gu, Wenjin; Bhangale, Apurva; Neal, Molly E. Heft; Smith, Josh D.; Brummel, Collin; McHugh, Jonathan B.; Spector, Matthew E.; Mills, Ryan E.; Brenner, J. Chad

SquiggleNet: real-time, direct classification of nanopore signals

GENOME BIOLOGY

IF9.4

2021-10-27

OAAI

Bao, Yuwei; Wadden, Jack; Erb-Downward, John R.; Ranjan, Piyush; Zhou, Weichen; McDonald, Torrin L.; Mills, Ryan E.; Boyle, Alan P.; Dickson, Robert P.; Blaauw, David; Welch, Joshua D.

SearcHPV: A novel approach to identify and assemble human papillomavirus-host genomic integration events in cancer

CANCER

IF5.1

2021-06-23

OAAI

Pinatti, Lisa M.; Gu, Wenjin; Wang, Yifan; Elhossiny, Ahmed; Bhangale, Apurva D.; Brummel, Collin V.; Carey, Thomas E.; Mills, Ryan E.; Brenner, J. Chad

Cas9 targeted enrichment of mobile elements using nanopore sequencing

NATURE COMMUNICATIONS

IF15.7

2021-06-11

OAAI

McDonald, Torrin L.; Zhou, Weichen; Castro, Christopher; Mumm, Camille; Switzenberg, Jessica A.; Mills, Ryan E.; Boyle, Alan P.

Genome diversity in Ukraine 乌克兰的基因组多样性

GIGASCIENCE

IF3.9

2021-01-13

OAAI

Oleksyk, Taras K.; Wolfsberger, Walter W.; Weber, Alexandra M.; Shchubelka, Khrystyna; Oleksyk, Olga T.; Levchuk, Olga; Patrus, Alla; Lazar, Nelya; Castro-Marquez, Stephanie O.; Hasynets, Yaroslava; Boldyzhar, Patricia; Neymet, Mikhailo; Urbanovych, Alina; Stakhovska, Viktoriya; Malyar, Kateryna; Chervyakova, Svitlana; Podoroha, Olena; Kovalchuk, Natalia; Rodriguez-Flores, Juan L.; Zhou, Weichen; Medley, Sarah; Battistuzzi, Fabia; Liu, Ryan; Hou, Yong; Chen, Siru; Yang, Huanming; Yeager, Meredith; Dean, Michael; Mills, Ryan E.; Smolanka, Volodymyr

Characterization of nuclear mitochondrial insertions in the whole genomes of primates

genomics proteomics bioinformatics

IF2.8

2020-11-16

OAAI

Dayama, Gargi; Zhou, Weichen; Prado-Martinez, Javier; Marques-Bonet, Tomas; Mills, Ryan E.

A robust benchmark for detection of germline large deletions and insertions (Jun, 10.1038/s41587-020-0538-8, 2020)用于检测种系大缺失和插入的稳健基准 (6月，10.1038/s41587-020-0538-8，2020)

NATURE BIOTECHNOLOGY

IF41.7

2020-07-22

OAAI

Zook, Justin M.; Hansen, Nancy F.; Olson, Nathan D.; Chapman, Lesley; Mullikin, James C.; Xiao, Chunlin; Sherry, Stephen; Koren, Sergey; Phillippy, Adam M.; Boutros, Paul C.; Sahraeian, Sayed Mohammad E.; Huang, Vincent; Rouette, Alexandre; Alexander, Noah; Mason, Christopher E.; Hajirasouliha, Iman; Ricketts, Camir; Lee, Joyce; Tearle, Rick; Fiddes, Ian T.; Barrio, Alvaro Martinez; Wala, Jeremiah; Carroll, Andrew; Ghaffari, Noushin; Rodriguez, Oscar L.; Bashir, Ali; Jackman, Shaun; Farrell, John J.; Wenger, Aaron M.; Alkan, Can; Soylev, Arda; Schatz, Michael C.; Garg, Shilpa; Church, George; Marschall, Tobias; Chen, Ken; Fan, Xian; English, Adam C.; Rosenfeld, Jeffrey A.; Zhou, Weichen; Mills, Ryan E.; Sage, Jay M.; Davis, Jennifer R.; Kaiser, Michael D.; Oliver, John S.; Catalano, Anthony P.; Chaisson, Mark J. P.; Spies, Noah; Sedlazeck, Fritz J.; Salit, Marc

A robust benchmark for detection of germline large deletions and insertions 用于检测种系大缺失和插入的可靠基准

NATURE BIOTECHNOLOGY

IF41.7

2020-06-15

201

OAAI

Prognostic model for multiple myeloma progression integrating gene expression and clinical features 整合基因表达和临床特征的多发性骨髓瘤进展预后模型

GIGASCIENCE

IF3.9

2019-12-30

OAAI

Sun, Chen; Li, Hongyang; Mills, Ryan E.; Guan, Yuanfang

Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology

NUCLEIC ACIDS RESEARCH

IF13.1

2019-12-19

OAAI

Zhou, Weichen; Emery, Sarah B.; Flasch, Diane A.; Wang, Yifan; Kwan, Kenneth Y.; Kidd, Jeffrey M.; Moran, John, V; Mills, Ryan E.

Structural variation in the sequencing era 测序时代的结构变异

NATURE REVIEWS GENETICS

IF52

2019-11-15

349

OAAI

Ho, Steve S.; Urban, Alexander E.; Mills, Ryan E.

RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-09-23

OAAI

Moldovan, John B.; Wang, Yifan; Shuman, Stewart; Mills, Ryan E.; Moran, John V.

Translation of upstream open reading frames in a model of neuronal differentiation

BMC GENOMICS

IF3.7

2019-05-20

OAAI

Rodriguez, Caitlin M.; Chun, Sang Y.; Mills, Ryan E.; Todd, Peter K.

Multi-platform discovery of haplotype-resolved structural variation in human genomes 人类基因组单倍型解析结构变异的多平台发现

NATURE COMMUNICATIONS

IF15.7

2019-04-16

547

OAAI

Chaisson, Mark J. P.; Sanders, Ashley D.; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J.; Rodriguez, Oscar L.; Guo, Li; Collins, Ryan L.; Fan, Xian; Wen, Jia; Handsaker, Robert E.; Fairley, Susan; Kronenberg, Zev N.; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M.; Hastie, Alex R.; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A.; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T.; Lambert, Christine C.; Church, Deanna M.; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U.; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T.; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M.; Navarro, Fabio C. P.; Nelson, Bradley J.; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W. C.; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stuetz, Adrian; Spierings, Diana C. J.; Ward, Alistair; Welch, AnneMarie E.; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B.; Kwok, Pui-Yan; Lansdorp, Peter M.; Marth, Gabor T.; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E.; Talkowski, Michael E.; Mills, Ryan E.; Marschall, Tobias; Korbel, Jan O.; Eichler, Evan E.; Lee, Charles

研究方向