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J

Jacob Schreiber

vienna biocentre

23H指数
79论文数
3.4K被引数
收录论文 22
发表时间
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Tangermeme: a toolkit for understanding cis-regulatory logic using deep learning modelsTangermeme：一个用于理解顺式调控逻辑的深度学习模型工具包
errNature Methods
IF32.1
err2026-10-08
err0
errOAAI
errJacob Schreiber
err分享
err收藏
Predictive design of tissue-specific mammalian enhancers that function in the mouse embryo预测在 mouse 胚胎中具有功能的组织特异性哺乳动物增强子的设计
errNature Genetics
IF29
err2026-08-25
err0
errOAAI
errShenzhi Chen; Vincent Loubiere; Ethan W. Hollingsworth; Ken Murakami; Nikolaus Mandlburger; Sandra H. Jacinto; Atrin Dizehchi; Jacob Schreiber; Evgeny Z. Kvon; Alexander Stark
err分享
err收藏
Positional interpretation of cis-regulatory code and nucleosome organization with deep learning models利用深度学习模型对顺式调控代码和核小体组织进行位置解释
errNature Communications
IF15.7
err2026-07-04
err0
errOAAI
errCharles E. McAnany; Melanie Weilert; Grishma Mehta; Fahad Kamulegeya; Jennifer M. Gardner; Jacob Schreiber; Anshul Kundaje; Julia Zeitlinger
err分享
err收藏
Tomtom-lite: accelerating Tomtom enables large-scale and real-time motif similarity scoringTomtom-lite：加速Tomtom以实现大规模和实时基序相似性评分
errBIOINFORMATICS
IF5.4
err2025-11-01
err0
PREAI
errSchreiber, Jacob
err分享
err收藏
Predicting chromatin conformation contact maps预测染色质构象接触图谱
errPLOS ONE
IF2.6
err2025-09-29
err0
PREAI
errMin, Alan; Schreiber, Jacob; Kundaje, Anshul; Noble, William S.
err分享
err收藏
Cross-species imputation and comparison of single-cell transcriptomic profiles跨物种单细胞转录组图谱的推算与比较
errGENOME BIOLOGY
IF9.4
err2025-02-26
err0
errOAAI
errZhang, Ran; Yang, Mu; Schreiber, Jacob; O'Day, Diana R.; Turner, James M. A.; Shendure, Jay; Noble, William Stafford; Disteche, Christine M.
err分享
err收藏
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles ( vol 24 , 79 , 2023)ENCODE 插补挑战：对跨细胞类型表观基因组谱插补方法的关键评估（卷 24，79，2023）
errGENOME BIOLOGY
IF9.4
err2025-02-13
err0
errOAAI
errSchreiber, Jacob Matthew; Boix, Carles A.; Lee, Jin Wook; Li, Hongyang; Guan, Yuanfang; Chang, Chun-Chieh; Chang, Jen-Chien; Hawkins-Hooker, Alex; Schoelkopf, Bernhard; Schweikert, Gabriele; Carulla, Mateo Rojas; Canakoglu, Arif; Guzzo, Francesco; Nanni, Luca; Masseroli, Marco; Carman, Mark James; Pinoli, Pietro; Hong, Chenyang; Yip, Kevin Y.; Spence, Jefrey P.; Batra, Sanjit Singh; Song, Yun S.; Mahony, Shaun; Zhang, Zheng; Tan, Wuwei; Shen, Yang; Sun, Yuanfei; Shi, Minyi; Adrian, Jessika; Sandstrom, Richard S.; Farrell, Nina P.; Halow, Jessica M.; Lee, Kristen; Jiang, Lixia; Yang, Xinqiong; Epstein, Charles B.; Strattan, J. Seth; Bernstein, Bradley E.; Snyder, Michael P.; Kellis, Manolis; Noble, William S.; Kundaje, Anshul Bharat; ENCODE Imputat Challenge Participants
err分享
err收藏
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles编码填补挑战: 表观基因组谱的跨细胞类型填补方法的关键评估
errGENOME BIOLOGY
IF9.4
err2023-04-18
err7
errOAAI
errSchreiber, Jacob; Boix, Carles; Lee, Jin Wook; Li, Hongyang; Guan, Yuanfang; Chang, Chun-Chieh; Chang, Jen-Chien; Hawkins-Hooker, Alex; Scholkopf, Bernhard; Schweikert, Gabriele; Carulla, Mateo Rojas; Canakoglu, Arif; Guzzo, Francesco; Nanni, Luca; Masseroli, Marco; Carman, Mark James; Pinoli, Pietro; Hong, Chenyang; Yip, Kevin Y.; Spence, Jeffrey P.; Batra, Sanjit Singh; Song, Yun S.; Mahony, Shaun; Zhang, Zheng; Tan, Wuwei; Shen, Yang; Sun, Yuanfei; Shi, Minyi; Adrian, Jessika; Sandstrom, Richard; Farrell, Nina; Halow, Jessica; Lee, Kristen; Jiang, Lixia; Yang, Xinqiong; Epstein, Charles; Strattan, J. Seth; Bernstein, Bradley; Snyder, Michael; Kellis, Manolis; Stafford, William; Kundaje, Anshul
err分享
err收藏
GENCODE: reference annotation for the human and mouse genomes in 2023GENCODE: 人类和小鼠基因组2023年的参考注释
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-11-24
err89
errOAAI
errFrankish, Adam; Carbonell-Sala, Silvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E.; Mudge, Jonathan M.; Sisu, Cristina; Wright, James C.; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdan-Velez, Daniel; Cunningham, Fiona; Davidson, Claire; Donaldson, Sarah; Dursun, Cagatay; Fatima, Reham; Giorgetti, Stefano; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Hardy, Matthew; Harrison, Peter W.; Hourlier, Thibaut; Hollis, Zoe; Hunt, Toby; James, Benjamin; Jiang, Yunzhe; Johnson, Rory; Kay, Mike; Lagarde, Julien; Martin, Fergal J.; Gomez, Laura Martinez; Nair, Surag; Ni, Pengyu; Pozo, Fernando; Ramalingam, Vivek; Ruffier, Magali; Schmitt, Bianca M.; Schreiber, Jacob M.; Steed, Emily; Suner, Marie-Marthe; Sumathipala, Dulika; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wass, Elizabeth; Yang, Yucheng T.; Yates, Andrew; Zafrulla, Zahoor; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Kundaje, Anshul; Paten, Benedict; Tress, Michael L.; Flicek, Paul
err分享
err收藏
Machine learning for profile prediction in genomics用于基因组学中轮廓预测的机器学习
errCURRENT OPINION IN CHEMICAL BIOLOGY
IF6.1
err2021-12-01
err8
errOAAI
errSchreiber, Jacob; Singh, Ritambhara
err分享
err收藏
Navigating the pitfalls of applying machine learning in genomics导航在基因组学中应用机器学习的陷阱
errNATURE REVIEWS GENETICS
IF52
err2021-11-26
err115
PREAI
errWhalen, Sean; Schreiber, Jacob; Noble, William S.; Pollard, Katherine S.
err分享
err收藏
Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome (vol 21, 81, 2020)
errGENOME BIOLOGY
IF9.4
err2021-09-03
err0
errOAAI
errSchreiber, Jacob; Durham, Timothy; Bilmes, Jeffrey; Noble, William Stafford
err分享
err收藏
A pitfall for machine learning methods aiming to predict across cell types
errGENOME BIOLOGY
IF9.4
err2020-11-19
err23
errOAAI
errSchreiber, Jacob; Singh, Ritambhara; Bilmes, Jeffrey; Noble, William Stafford
err分享
err收藏
A High-Throughput Screen for Transcription Activation Domains Reveals Their Sequence Features and Permits Prediction by Deep Learning (vol 78, pg 890, 2020)
errMOLECULAR CELL
IF16.6
err2020-09-01
err4
errOAAI
errErijman, Ariel; Kozlowski, Lukasz; Sohrabi-Jahromi, Salma; Fishburn, James; Warfield, Linda; Schreiber, Jacob; Noble, William S.; Soding, Johannes; Hahn, Steven
err分享
err收藏
A High-Throughput Screen for Transcription Activation Domains Reveals Their Sequence Features and Permits Prediction by Deep Learning转录激活结构域的高通量筛选揭示了它们的序列特征，并允许通过深度学习进行预测
errMOLECULAR CELL
IF16.6
err2020-06-01
err64
errOAAI
errErijman, Ariel; Kozlowski, Lukasz; Sohrabi-Jahromi, Salma; Fishburn, James; Warfield, Linda; Schreiber, Jacob; Noble, William S.; Soeding, Johannes; Hahn, Steven
err分享
err收藏
Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
errGENOME BIOLOGY
IF9.4
err2020-03-30
err59
errOAAI
errSchreiber, Jacob; Durham, Timothy; Bilmes, Jeffrey; Noble, William Stafford
err分享
err收藏
Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples
errGENOME BIOLOGY
IF9.4
err2020-03-30
err25
errOAAI
errSchreiber, Jacob; Bilmes, Jeffrey; Noble, William Stafford
err分享
err收藏
Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair
errNUCLEIC ACIDS RESEARCH
IF13.1
err2019-06-05
err115
errOAAI
errChen, Wei; McKenna, Aaron; Schreiber, Jacob; Haeussler, Maximilian; Yin, Yi; Agarwal, Vikram; Noble, William Stafford; Shendure, Jay
err分享
err收藏
Finding the optimal Bayesian network given a constraint graph
errPEERJ COMPUTER SCIENCE
IF2.5
err2017-07-03
err9
errOAAI
errSchreiber, Jacob M.; Noble, William S.
err分享
err收藏
Discrimination among Protein Variants Using an Unfoldase-Coupled Nanopore使用unfolidase耦合的纳米孔区分蛋白质变体
errACS NANO
IF16
err2014-12-08
err111
PREAI
errNivala, Jeff; Mulroney, Logan; Li, Gabriel; Schreiber, Jacob; Akeson, Mark
err分享
err收藏

研究方向

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合作学者
合作期刊
M
M Snyder
H 指数: 210 · 论文数: 3.3K
M
Mark Gerstein
H 指数: 191 · 论文数: 1.2K
P
Paul Flicek
H 指数: 167 · 论文数: 522
J
Jay Shendure
H 指数: 167 · 论文数: 663
B
Bernhard Schölkopf
H 指数: 140 · 论文数: 1.5K
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