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Ricardo O. Ramirez Flores

european bioinformatics institute

20H指数
59论文数
3.9K被引数
收录论文 15
发表时间
Semi-supervised Omics Factor Analysis (SOFA) disentangles known and latent sources of variation in multi-omic data半监督组学因子分析(SOFA)区分多组学数据中已知的和潜在的可变来源
err2026-08-20
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errTümay Capraz; Harald Vöhringer; Klaus Sebastian Augusto Kruger Serrano; Ricardo Omar Ramirez Flores; Julio Saez-Rodriguez; Wolfgang Huber
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Cold and hot fibrosis define clinically distinct cardiac pathologies冷性和热性纤维化定义了临床上不同的心脏病理学。
err2025-02-01
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errMiyara, Shoval; Adler, Miri; Umansky, Kfir B.; Haeuroussler, Daniel; Bassat, Elad; Divinsky, Yalin; Elkahal, Jacob; Kain, David; Lendengolts, Daria; Flores, Ricardo O. Ramirez; Bueno-Levy, Hanna; Golani, Ofra; Shalit, Tali; Gershovits, Michael; Weizman, Eviatar; Genzelinakh, Alexander; Kimchi, Danielle M.; Shakked, Avraham; Zhang, Lingling; Wang, Jingkui; Baehr, Andrea; Petrover, Zachary; Sarig, Rachel; Dorn, Tatjana; Moretti, Alessandra; Saez-Rodriguez, Julio; Kupatt, Christian; Tanaka, Elly M.; Medzhitov, Ruslan; Krueuroger, Achim; Mayo, Avi; Alon, Uri; Tzahor, Eldad
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Single-cell transcriptomics reveal distinctive patterns of fibroblast activation in heart failure with preserved ejection fraction
err2024-09-23
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errLanzer, Jan D.; Wienecke, Laura M.; Flores, Ricardo O. Ramirez; Zylla, Maura M.; Kley, Celina; Hartmann, Niklas; Sicklinger, Florian; Schultz, Jobst-Hendrik; Frey, Norbert; Saez-Rodriguez, Julio; Leuschner, Florian
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LIANA plus provides an all-in-one framework for cell-cell communication inferenceLIANA plus为细胞间通信推理提供了一个多功能于一体的框架
err2024-09-02
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errDimitrov, Daniel; Schaefer, Philipp Sven Lars; Farr, Elias; Rodriguez-Mier, Pablo; Lobentanzer, Sebastian; Badia-i-Mompel, Pau; Dugourd, Aurelien; Tanevski, Jovan; Flores, Ricardo Omar Ramirez; Saez-Rodriguez, Julio
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Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results
err2024-06-29
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errPaton, Victor; Ramirez Flores, Ricardo Omar; Gabor, Attila; Badia-i-Mompel, Pau; Tanevski, Jovan; Garrido-Rodriguez, Martin; Saez-Rodriguez, Julio
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Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease单细胞数据的多细胞因子分析,以组织为中心的疾病理解
err2023-11-22
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errFlores, Ricardo Omar Ramirez; Lanzer, Jan David; Dimitrov, Daniel; Velten, Britta; Saez-Rodriguez, Julio
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Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities从高置信度先验知识中扩展调节子的覆盖范围,以准确估计转录因子的活性
err2023-10-16
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errMueller-Dott, Sophia; Tsirvouli, Eirini; Vazquez, Miguel; Flores, Ricardo O. Ramirez; Badia-i-Mompel, Pau; Fallegger, Robin; Tuerei, Denes; Laegreid, Astrid; Saez-Rodriguez, Julio
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Gene regulatory network inference in the era of single-cell multi-omics单细胞多组学时代的基因调控网络推断
err2023-06-26
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PREAI
errBadia-i-Mompel, Pau; Wessels, Lorna; Mueller-Dott, Sophia; Trimbour, Remi; Flores, Ricardo Ramirez O.; Argelaguet, Ricard; Saez-Rodriguez, Julio
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B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing
errIMMUNITY
IF26.3
err2022-12-01
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errFrede, Annika; Czarnewski, Paulo; Monasterio, Gustavo; Tripathi, Kumar P.; Bejarano, David A.; Flores, Ricardo O. Ramirez; Sorini, Chiara; Larsson, Ludvig; Luo, Xinxin; Geerlings, Laura; Novella-Rausell, Claudio; Zagami, Chiara; Kuiper, Raoul; Morales, Rodrigo A.; Castillo, Francisca; Hunt, Matthew; Mariano, Livia Lacerda; Hu, Yue O. O.; Engblom, Camilla; Lennon-Dumenil, Ana-Maria; Mittenzwei, Romy; Westendorf, Astrid M.; Hoevelmeyer, Nadine; Lundeberg, Joakim; Saez-Rodriguez, Julio; Schlitzer, Andreas; Das, Srustidhar; Villablanca, Eduardo J.
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Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data从单细胞rna-seq数据进行细胞间通信推断的方法和资源的比较
err2022-06-09
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errDimitrov, Daniel; Tuerei, Denes; Garrido-Rodriguez, Martin; Burmedi, Paul L.; Nagai, James S.; Boys, Charlotte; Flores, Ricardo O. Ramirez; Kim, Hyojin; Szalai, Bence; Costa, Ivan G.; Valdeolivas, Alberto; Dugourd, Aurelien; Saez-Rodriguez, Julio
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The spatial transcriptomic landscape of the healing mouse intestine following damage损伤后愈合小鼠肠道的空间转录组景观
err2022-02-11
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errParigi, Sara M.; Larsson, Ludvig; Das, Srustidhar; Flores, Ricardo O. Ramirez; Frede, Annika; Tripathi, Kumar P.; Diaz, Oscar E.; Selin, Katja; Morales, Rodrigo A.; Luo, Xinxin; Monasterio, Gustavo; Engblom, Camilla; Gagliani, Nicola; Saez-Rodriguez, Julio; Lundeberg, Joakim; Villablanca, Eduardo J.
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Transcriptomic Cross-Species Analysis of Chronic Liver Disease Reveals Consistent Regulation Between Humans and Mice
err2021-08-28
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errHolland, Christian H.; Flores, Ricardo O. Ramirez; Myllys, Maiju; Hassan, Reham; Edlund, Karolina; Hofmann, Ute; Marchan, Rosemarie; Cadenas, Cristina; Reinders, Joerg; Hoehme, Stefan; Seddek, Abdel-latif; Dooley, Steven; Keitel, Verena; Godoy, Patricio; Begher-Tibbe, Brigitte; Trautwein, Christian; Rupp, Christian; Mueller, Sebastian; Longerich, Thomas; Hengstler, Jan G.; Saez-Rodriguez, Julio; Ghallab, Ahmed
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Consensus Transcriptional Landscape of Human End-Stage Heart Failure
err2021-04-06
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errFlores, Ricardo O. Ramirez; Lanzer, Jan D.; Holland, Christian H.; Leuschner, Florian; Most, Patrick; Schultz, Jobst-Hendrik; Levinson, Rebecca T.; Saez-Rodriguez, Julio
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