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收藏分享 收藏 Single cell transcriptomic analysis of Graves' disease thyroid glands reveals the broad immunoregulatory potential of thyroid follicular and stromal cells and implies a major re-interpretation of the role of aberrant HLA class II expression in autoimmunity
Alvarez-Sierra, Daniel; Rodriguez-Grande, Jorge; Gomez-Brey, Aroa; Bello, Irene; Caubet, Enric; Gonzalez, Oscar; Zafon, Carles; Iglesias, Carmela; Moreno, Pablo; Ruiz, Nuria; Marin-Sanchez, Ana; Colobran, Roger; Pujol-Borrell, Ricardo 分享 收藏 Thyroid cells from normal and autoimmune thyroid glands suppress T lymphocytes proliferation upon contact revealing a new regulatory inhibitory type of interaction independent of PD1/PDL1Alvarez-Sierra, Daniel; Sanchez-Gaona, Nerea; Cobo, Maria Cruz; Escriche, Alba; Abad, Maria; Gomez-Brey, Aroa; Bello, Irene; Caubet, Enric; Gonzalez, Oscar; Zafon, Carles; Iglesias, Carmela; Moreno, Pablo; Petitj, Anna; Fernandez-Sanmartin, Marco Antonio; Martinez-Gallo, Monica; Pujol-Borrell, Ricardo 分享 收藏 分享 收藏 Integrated View of Baseline Protein Expression in Human TissuesPrakash, Ananth; Garcia-Seisdedos, David; Wang, Shengbo; Kundu, Deepti Jaiswal; Collins, Andrew; George, Nancy; Moreno, Pablo; Papatheodorou, Irene; Jones, Andrew R.; Vizcaino, Juan Antonio 分享 收藏 The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update用于可访问，可复制和协作生物医学分析的Galaxy平台: 2022更新Ostrovsky, Alexander E.; Mahmoud, Alexandru; Lonie, Andrew J.; Syme, Anna; Fouilloux, Anne; Bretaudeau, Anthony; Nekrutenko, Anton; Kumar, Anup; Eschenlauer, Arthur C.; DeSanto, Assunta D.; Guerler, Aysam; Serrano-Solano, Beatriz; Batut, Berenice; Gruening, Bjoern A.; Langhorst, Bradley W.; Carr, Bridget; Raubenolt, Bryan A.; Hyde, Cameron J.; Bromhead, Catherine J.; Barnett, Christopher B.; Royaux, Coline; Gallardo, Cristobal; Blankenberg, Daniel; Fornika, Daniel J.; Baker, Dannon; Bouvier, Dave; Clements, Dave; Morais, David A. de Lima; Tabernero, David Lopez; Lariviere, Delphine; Nasr, Engy; Afgan, Enis; Zambelli, Federico; Heyl, Florian; Psomopoulos, Fotis; Coppens, Frederik; Price, Gareth R.; Cuccuru, Gianmauro; Le Corguille, Gildas; Von Kuster, Greg; Akbulut, Gulsum Gudukbay; Rasche, Helena; Hans-Rudolf, Hotz; Eguinoa, Ignacio; Makunin, Igor; Ranawaka, Isuru J.; Taylor, James P.; Joshi, Jayadev; Hillman-Jackson, Jennifer; Goecks, Jeremy; Chilton, John M.; Kamali, Kaivan; Suderman, Keith; Poterlowicz, Krzysztof; Yvan, Le Bras; Lopez-Delisle, Lucille; Sargent, Luke; Bassetti, Madeline E.; Tangaro, Marco Antonio; van den Beek, Marius; Cech, Martin; Bernt, Matthias; Fahrner, Matthias; Tekman, Mehmet; Foell, Melanie C.; Schatz, Michael C.; Crusoe, Michael R.; Roncoroni, Miguel; Kucher, Natalie; Coraor, Nate; Stoler, Nicholas; Rhodes, Nick; Soranzo, Nicola; Pinter, Niko; Goonasekera, Nuwan A.; Moreno, Pablo A.; Videm, Pavankumar; Melanie, Petera; Mandreoli, Pietro; Jagtap, Pratik D.; Gu, Qiang; Weber, Ralf J. M.; Lazarus, Ross; Vorderman, Ruben H. P.; Hiltemann, Saskia; Golitsynskiy, Sergey; Garg, Shilpa; Bray, Simon A.; Gladman, Simon L.; Leo, Simone; Mehta, Subina P.; Griffin, Timothy J.; Jalili, Vahid; Yves, Vandenbrouck; Wen, Victor; Nagampalli, Vijay K.; Bacon, Wendi A.; de Koning, Willem; Maier, Wolfgang; Briggs, Peter J. 分享 收藏 Expression Atlas update: gene and protein expression in multiple speciesMoreno, Pablo; Fexova, Silvie; George, Nancy; Manning, Jonathan R.; Miao, Zhichiao; Mohammed, Suhaib; Munoz-Pomer, Alfonso; Fullgrabe, Anja; Bi, Yalan; Bush, Natassja; Iqbal, Haider; Kumbham, Upendra; Solovyev, Andrey; Zhao, Lingyun; Prakash, Ananth; Garcia-Seisdedos, David; Kundu, Deepti J.; Wang, Shengbo; Walzer, Mathias; Clarke, Laura; Osumi-Sutherland, David; Tello-Ruiz, Marcela Karey; Kumari, Sunita; Ware, Doreen; Eliasova, Jana; Arends, Mark J.; Nawijn, Martijn C.; Meyer, Kerstin; Burdett, Tony; Marioni, John; Teichmann, Sarah; Vizcaino, Juan Antonio; Brazma, Alvis; Papatheodorou, Irene 分享 收藏 分享 收藏 A proteomics sample metadata representation for multiomics integration and big data analysisDai, Chengxin; Fullgrabe, Anja; Pfeuffer, Julianus; Solovyeva, Elizaveta M.; Deng, Jingwen; Moreno, Pablo; Kamatchinathan, Selvakumar; Kundu, Deepti Jaiswal; George, Nancy; Fexova, Silvie; Gruening, Bjoern; Foell, Melanie Christine; Griss, Johannes; Vaudel, Marc; Audain, Enrique; Locard-Paulet, Marie; Turewicz, Michael; Eisenacher, Martin; Uszkoreit, Julian; Van den Bossche, Tim; Schwammle, Veit; Webel, Henry; Schulze, Stefan; Bouyssie, David; Jayaram, Savita; Duggineni, Vinay Kumar; Samaras, Patroklos; Wilhelm, Mathias; Choi, Meena; Wang, Mingxun; Kohlbacher, Oliver; Brazma, Alvis; Papatheodorou, Irene; Bandeira, Nuno; Deutsch, Eric W.; Vizcaino, Juan Antonio; Bai, Mingze; Sachsenberg, Timo; Levitsky, Lev I.; Perez-Riverol, Yasset 分享 收藏 ISA API: An open platform for interoperable life science experimental metadataJohnson, David; Batista, Dominique; Cochrane, Keeva; Davey, Robert P.; Etuk, Anthony; Gonzalez-Beltran, Alejandra; Haug, Kenneth; Izzo, Massimiliano; Larralde, Martin; Lawson, Thomas N.; Minotto, Alice; Moreno, Pablo; Nainala, Venkata Chandrasekhar; O'Donovan, Claire; Pireddu, Luca; Roger, Pierrick; Shaw, Felix; Steinbeck, Christoph; Weber, Ralf J. M.; Sansone, Susanna-Assunta; Rocca-Serra, Philippe 分享 收藏 分享 收藏 User-friendly, scalable tools and workflows for single-cell RNA-seq analysisMoreno, Pablo; Huang, Ni; Manning, Jonathan R.; Mohammed, Suhaib; Solovyev, Andrey; Polanski, Krzysztof; Bacon, Wendi; Chazarra, Ruben; Talavera-Lopez, Carlos; Doyle, Maria A.; Marnier, Guilhem; Gruening, Bjoern; Rasche, Helena; George, Nancy; Fexova, Silvie Korena; Alibi, Mohamed; Miao, Zhichao; Perez-Riverol, Yasset; Haeussler, Maximilian; Brazma, Alvis; Teichmann, Sarah; Meyer, Kerstin B.; Papatheodorou, Irene 分享 收藏 BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and ContainersBai, Jingwen; Bandla, Chakradhar; Guo, Jiaxin; Alvarez, Roberto Vera; Bai, Mingze; Vizcaino, Juan Antonio; Moreno, Pablo; Gruening, Bjoern; Sallou, Olivier; Perez-Riverol, Yasset 分享 收藏 A single-cell RNA-sequencing training and analysis suite using the Galaxy frameworkTekman, Mehmet; Batut, Berenice; Ostrovsky, Alexander; Antoniewski, Christophe; Clements, Dave; Ramirez, Fidel; Etherington, Graham J.; Hotz, Hans-Rudolf; Scholtalbers, Jelle; Manning, Jonathan R.; Bellenger, Lea; Doyle, Maria A.; Heydarian, Mohammad; Huang, Ni; Soranzo, Nicola; Moreno, Pablo; Mautner, Stefan; Papatheodorou, Irene; Nekrutenko, Anton; Taylor, James; Blankenberg, Daniel; Backofen, Rolf; Gruening, Bjoern 分享 收藏 分享 收藏 分享 收藏 Expression Atlas update: from tissues to single cellsPapatheodorou, Irene; Moreno, Pablo; Manning, Jonathan; Fuentes, Alfonso Munoz-Pomer; George, Nancy; Fexova, Silvie; Fonseca, Nuno A.; Fullgrabe, Anja; Green, Matthew; Huang, Ni; Huerta, Laura; Lqbal, Haider; Jianu, Monica; Mohammed, Suhaib; Zhao, Lingyun; Jarnuczak, Andrew F.; Jupp, Simon; Marioni, John; Meyer, Kerstin; Petryszak, Robert; Medina, Cesar Augusto Prada; Talavera-Lopez, Carlos; Teichmann, Sarah; Vizcaino, Juan Antonio; Brazma, Alvis 分享 收藏 Automated structure prediction of trans-acyltransferase polyketide synthase productsHelfrich, Eric J. N.; Ueoka, Reiko; Dolev, Alon; Rust, Michael; Meodedl, Roy A.; Bhushan, Agneya; Califano, Gianmaria; Costa, Rodrigo; Gugger, Muriel; Steinbeck, Christoph; Moreno, Pablo; Piel, Jorn 分享 收藏 PhenoMeNal: processing and analysis of metabolomics data in the cloudPeters, Kristian; Bradbury, James; Bergmann, Sven; Capuccini, Marco; Cascante, Marta; de Atauri, Pedro; Ebbels, Timothy M. D.; Foguet, Carles; Glen, Robert; Gonzalez-Beltran, Alejandra; Gunther, Ulrich L.; Handakas, Evangelos; Hankemeier, Thomas; Haug, Kenneth; Herman, Stephanie; Holub, Petr; Izzo, Massimiliano; Jacob, Daniel; Johnson, David; Jourdan, Fabien; Kale, Namrata; Karaman, Ibrahim; Khalili, Bita; Khonsari, Payam Emami; Kultima, Kim; Lampa, Samuel; Larsson, Anders; Ludwig, Christian; Moreno, Pablo; Neumann, Steffen; Novella, Jon Ander; O'Donovan, Claire; Pearce, Jake T. M.; Peluso, Alina; Piras, Marco Enrico; Pireddu, Luca; Reed, Michelle A. C.; Rocca-Serra, Philippe; Roger, Pierrick; Rosato, Antonio; Rueedi, Rico; Ruttkies, Christoph; Sadawi, Noureddin; Salek, Reza M.; Sansone, Susanna-Assunta; Selivanov, Vitaly; Spjuth, Ola; Schober, Daniel; Thevenot, Etienne A.; Tomasoni, Mattia; van Rijswijk, Merlijn; van Vliet, Michael; Viant, Mark R.; Weber, Ralf J. M.; Zanetti, Gianluigi; Steinbeck, Christoph 分享 收藏 
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