Dominik Gront - Publications, H-index & Citations

Dominik Gront

interdisciplinary centre for mathematical & computational modelling

23H指数

89论文数

3.3K被引数

收录论文 23

发表时间

An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Salinispora Species 数量空前的细胞色素p450参与了Salinispora物种的次生代谢

MICROORGANISMS

IF4.2

2022-04-21

OAAI

Malinga, Nsikelelo Allison; Nzuza, Nomfundo; Padayachee, Tiara; Syed, Puleng Rosinah; Karpoormath, Rajshekhar; Gront, Dominik; Nelson, David R.; Syed, Khajamohiddin

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

NATURE COMMUNICATIONS

IF15.7

2021-11-29

OAAI

Leman, Julia Koehler; Lyskov, Sergey; Lewis, Steven M.; Adolf-Bryfogle, Jared; Alford, Rebecca F.; Barlow, Kyle; Ben-Aharon, Ziv; Farrell, Daniel; Fell, Jason; Hansen, William A.; Harmalkar, Ameya; Jeliazkov, Jeliazko; Kuenze, Georg; Krys, Justyna D.; Ljubetic, Ajasja; Loshbaugh, Amanda L.; Maguire, Jack; Moretti, Rocco; Mulligan, Vikram Khipple; Nance, Morgan L.; Nguyen, Phuong T.; Conchuir, Shane O.; Burman, Shourya S. Roy; Samanta, Rituparna; Smith, Shannon T.; Teets, Frank; Tiemann, Johanna K. S.; Watkins, Andrew; Woods, Hope; Yachnin, Brahm J.; Bahl, Christopher D.; Bailey-Kellogg, Chris; Baker, David; Das, Rhiju; DiMaio, Frank; Khare, Sagar D.; Kortemme, Tanja; Labonte, Jason W.; Lindorff-Larsen, Kresten; Meiler, Jens; Schief, William; Schueler-Furman, Ora; Siegel, Justin B.; Stein, Amelie; Yarov-Yarovoy, Vladimir; Kuhlman, Brian; Leaver-Fay, Andrew; Gront, Dominik; Gray, Jeffrey J.; Bonneau, Richard

In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria

MOLECULES

IF4.6

2021-03-11

OAAI

Msomi, Ntombizethu Nokuphiwa; Padayachee, Tiara; Nzuza, Nomfundo; Syed, Puleng Rosinah; Krys, Justyna Dorota; Chen, Wanping; Gront, Dominik; Nelson, David R.; Syed, Khajamohiddin

Macromolecular modeling and design in Rosetta: recent methods and frameworks Rosetta中的大分子建模和设计: 最新方法和框架

NATURE METHODS

IF32.1

2020-06-01

477

OAAI

Leman, Julia Koehler; Weitzner, Brian D.; Lewis, Steven M.; Adolf-Bryfogle, Jared; Alam, Nawsad; Alford, Rebecca F.; Aprahamian, Melanie; Baker, David; Barlow, Kyle A.; Barth, Patrick; Basanta, Benjamin; Bender, Brian J.; Blacklock, Kristin; Bonet, Jaume; Boyken, Scott E.; Bradley, Phil; Bystroff, Chris; Conway, Patrick; Cooper, Seth; Correia, Bruno E.; Coventry, Brian; Das, Rhiju; De Jong, Rene M.; DiMaio, Frank; Dsilva, Lorna; Dunbrack, Roland; Ford, Alexander S.; Frenz, Brandon; Fu, Darwin Y.; Geniesse, Caleb; Goldschmidt, Lukasz; Gowthaman, Ragul; Gray, Jeffrey J.; Gront, Dominik; Guffy, Sharon; Horowitz, Scott; Huang, Po-Ssu; Huber, Thomas; Jacobs, Tim M.; Jeliazkov, Jeliazko R.; Johnson, David K.; Kappel, Kalli; Karanicolas, John; Khakzad, Hamed; Khar, Karen R.; Khare, Sagar D.; Khatib, Firas; Khramushin, Alisa; King, Indigo C.; Kleffner, Robert; Koepnick, Brian; Kortemme, Tanja; Kuenze, Georg; Kuhlman, Brian; Kuroda, Daisuke; Labonte, Jason W.; Lai, Jason K.; Lapidoth, Gideon; Leaver-Fay, Andrew; Lindert, Steffen; Linsky, Thomas; London, Nir; Lubin, Joseph H.; Lyskov, Sergey; Maguire, Jack; Malmstroem, Lars; Marcos, Enrique; Marcu, Orly; Marze, Nicholas A.; Meiler, Jens; Moretti, Rocco; Mulligan, Vikram Khipple; Nerli, Santrupti; Norn, Christoffer; O'Conchuir, Shane; Ollikainen, Noah; Ovchinnikov, Sergey; Pacella, Michael S.; Pan, Xingjie; Park, Hahnbeom; Pavlovicz, Ryan E.; Pethe, Manasi; Pierce, Brian G.; Pilla, Kala Bharath; Raveh, Barak; Renfrew, P. Douglas; Burman, Shourya S. Roy; Rubenstein, Aliza; Sauer, Marion F.; Scheck, Andreas; Schief, William; Schueler-Furman, Ora; Sedan, Yuval; Sevy, Alexander M.; Sgourakis, Nikolaos G.; Shi, Lei; Siegel, Justin B.; Silva, Daniel-Adriano; Smith, Shannon; Song, Yifan; Stein, Amelie; Szegedy, Maria; Teets, Frank D.; Thyme, Summer B.; Wang, Ray Yu-Ruei; Watkins, Andrew; Zimmerman, Lior; Bonneau, Richard

Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2020-05-18

OAAI

Kim, Doo Nam; Gront, Dominik; Sanbonmatsu, Karissa Y.

Comparison of α-Helix and β-Sheet Structure Adaptation to a Quantum Dot Geometry: Toward the Identification of an Optimal Motif for a Protein Nanoparticle Cover

ACS OMEGA

IF4.3

2019-08-05

OAAI

Kopec, Katarzyna; Pedziwiatr, Marta; Gront, Dominik; Sztatelman, Olga; Slawski, Jakub; Lazick, Magdalena; Worch, Remigiusz; Zawada, Katarzyna; Makarova, Katerina; Nyk, Marcin; Grzyb, Joanna

Parallel Implementation of a Sequential Markov Chain in Monte Carlo Simulations of Physical Systems with Pairwise Interactions

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2019-03-25

PREAI

Migacz, Szymon; Dutka, Kajetan; Gumienny, Przemyslaw; Marchwiany, Maciej; Gront, Dominik; Rudnicki, Witold R.

Coarse-Grained Modeling of the Interplay between Secondary Structure Propensities and Protein Fold Assembly

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2018-02-27

OAAI

Dawid, Aleksandra E.; Gront, Dominik; Kolinski, Andrzej