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Longitudinal, multimodal profiling of metastatic ER plus breast cancer on CDK4/6 inhibitor therapy Creason, Allison L.; Egger, Julian; Watson, Cameron; Sivagnanam, Shamilene; Lin, Jia-Ren; Chin, Koei; Sorger, Peter K.; Coussens, Lisa M.; Mitri, Zahi I.; Gray, Joe W.; Mills, Gordon B.; Goecks, Jeremy 分享 收藏
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update 用于可访问，可复制和协作生物医学分析的Galaxy平台: 2022更新 Ostrovsky, Alexander E.; Mahmoud, Alexandru; Lonie, Andrew J.; Syme, Anna; Fouilloux, Anne; Bretaudeau, Anthony; Nekrutenko, Anton; Kumar, Anup; Eschenlauer, Arthur C.; DeSanto, Assunta D.; Guerler, Aysam; Serrano-Solano, Beatriz; Batut, Berenice; Gruening, Bjoern A.; Langhorst, Bradley W.; Carr, Bridget; Raubenolt, Bryan A.; Hyde, Cameron J.; Bromhead, Catherine J.; Barnett, Christopher B.; Royaux, Coline; Gallardo, Cristobal; Blankenberg, Daniel; Fornika, Daniel J.; Baker, Dannon; Bouvier, Dave; Clements, Dave; Morais, David A. de Lima; Tabernero, David Lopez; Lariviere, Delphine; Nasr, Engy; Afgan, Enis; Zambelli, Federico; Heyl, Florian; Psomopoulos, Fotis; Coppens, Frederik; Price, Gareth R.; Cuccuru, Gianmauro; Le Corguille, Gildas; Von Kuster, Greg; Akbulut, Gulsum Gudukbay; Rasche, Helena; Hans-Rudolf, Hotz; Eguinoa, Ignacio; Makunin, Igor; Ranawaka, Isuru J.; Taylor, James P.; Joshi, Jayadev; Hillman-Jackson, Jennifer; Goecks, Jeremy; Chilton, John M.; Kamali, Kaivan; Suderman, Keith; Poterlowicz, Krzysztof; Yvan, Le Bras; Lopez-Delisle, Lucille; Sargent, Luke; Bassetti, Madeline E.; Tangaro, Marco Antonio; van den Beek, Marius; Cech, Martin; Bernt, Matthias; Fahrner, Matthias; Tekman, Mehmet; Foell, Melanie C.; Schatz, Michael C.; Crusoe, Michael R.; Roncoroni, Miguel; Kucher, Natalie; Coraor, Nate; Stoler, Nicholas; Rhodes, Nick; Soranzo, Nicola; Pinter, Niko; Goonasekera, Nuwan A.; Moreno, Pablo A.; Videm, Pavankumar; Melanie, Petera; Mandreoli, Pietro; Jagtap, Pratik D.; Gu, Qiang; Weber, Ralf J. M.; Lazarus, Ross; Vorderman, Ruben H. P.; Hiltemann, Saskia; Golitsynskiy, Sergey; Garg, Shilpa; Bray, Simon A.; Gladman, Simon L.; Leo, Simone; Mehta, Subina P.; Griffin, Timothy J.; Jalili, Vahid; Yves, Vandenbrouck; Wen, Victor; Nagampalli, Vijay K.; Bacon, Wendi A.; de Koning, Willem; Maier, Wolfgang; Briggs, Peter J. 分享 收藏
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An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer 来自不断发展的转移性乳腺癌的连续活检的组学和多维空间图谱 Johnson, Brett E.; Creason, Allison L.; Stommel, Jayne M.; Keck, Jamie M.; Parmar, Swapnil; Betts, Courtney B.; Blucher, Aurora; Boniface, Christopher; Bucher, Elmar; Burlingame, Erik; Camp, Todd; Chin, Koei; Eng, Jennifer; Estabrook, Joseph; Feiler, Heidi S.; Heskett, Michael B.; Hu, Zhi; Kolodzie, Annette; Kong, Ben L.; Labrie, Marilyne; Lee, Jinho; Leyshock, Patrick; Mitri, Souraya; Patterson, Janice; Riesterer, Jessica L.; Sivagnanam, Shamilene; Somers, Julia; Sudar, Damir; Thibault, Guillaume; Weeder, Benjamin R.; Zheng, Christina; Nan, Xiaolin; Thompson, Reid F.; Heiser, Laura M.; Spellman, Paul T.; Thomas, George; Demir, Emek; Chang, Young Hwan; Coussens, Lisa M.; Guimaraes, Alexander R.; Corless, Christopher; Goecks, Jeremy; Bergan, Raymond; Mitri, Zahi; Mills, Gordon B.; Gray, Joe W. 分享 收藏
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis Visualization, and Informatics Lab-space 利用NHGRI基因组数据科学分析可视化和信息学实验室空间反转基因组学数据共享模型 Schatz, Michael C.; Philippakis, Anthony A.; Afgan, Enis; Banks, Eric; Carey, Vincent J.; Carroll, Robert J.; Culotti, Alessandro; Ellrott, Kyle; Goecks, Jeremy; Grossman, Robert L.; Hall, Ira M.; Hansen, Kasper D.; Lawson, Jonathan; Leek, Jeffrey T.; Luria, Anne O'Donnell; Mosher, Stephen; Morgan, Martin; Nekrutenko, Anton; O'Connor, Brian D.; Osborn, Kevin; Paten, Benedict; Patterson, Candace; Tan, Frederick J.; Taylor, Casey Overby; Vessio, Jennifer; Waldron, Levi; Wang, Ting; Wuichet, Kristin 分享 收藏
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging MCMICRO: 用于多路组织成像的可扩展的模块化图像处理流水线 Schapiro, Denis; Sokolov, Artem; Yapp, Clarence; Chen, Yu-An; Muhlich, Jeremy L.; Hess, Joshua; Creason, Allison L.; Nirmal, Ajit J.; Baker, Gregory J.; Nariya, Maulik K.; Lin, Jia-Ren; Maliga, Zoltan; Jacobson, Connor A.; Hodgman, Matthew W.; Ruokonen, Juha; Farhi, Samouil L.; Abbondanza, Domenic; McKinley, Eliot T.; Persson, Daniel; Betts, Courtney; Sivagnanam, Shamilene; Regev, Aviv; Goecks, Jeremy; Coffey, Robert J.; Coussens, Lisa M.; Santagata, Sandro; Sorger, Peter K. 分享 收藏
Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies Labrie, Marilyne; Li, Allen; Creason, Allison; Betts, Courtney; Keck, Jamie; Johnson, Brett; Sivagnanam, Shamilene; Boniface, Christopher; Ma, Hongli; Blucher, Aurora; Chang, Young Hwan; Chin, Koei; Vuky, Jacqueline; Guimaraes, Alexander R.; Downey, Molly; Lim, Jeong Youn; Gao, Lina; Siex, Kiara; Parmar, Swapnil; Kolodzie, Annette; Spellman, Paul T.; Goecks, Jeremy; Coussens, Lisa M.; Corless, Christopher L.; Bergan, Raymond; Gray, Joe W.; Mills, Gordon B.; Mitri, Zahi I. 分享 收藏
Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome 胰腺导管腺癌的白细胞异质性: 与临床结果相关的表型和空间特征 Liudahl, Shannon M.; Betts, Courtney B.; Sivagnanam, Shamilene; Morales-Oyarvide, Vicente; da Silva, Annacarolina; Yuan, Chen; Hwang, Samuel; Grossblatt-Wait, Alison; Leis, Kenna R.; Larson, William; Lavoie, Meghan B.; Robinson, Padraic; Costa, Andressa Dias; Vayrynen, Sara A.; Clancy, Thomas E.; Rubinson, Douglas A.; Link, Jason; Keith, Dove; Horton, Wesley; Tempero, Margaret A.; Vonderheide, Robert H.; Jaffee, Elizabeth M.; Sheppard, Brett; Goecks, Jeremy; Sears, Rosalie C.; Park, Byung S.; Mori, Motomi; Nowak, Jonathan A.; Wolpin, Brian M.; Coussens, Lisa M. 分享 收藏
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update (vol 48, pg W395, 2020) Jalili, Vahid; Afgan, Enis; Gu, Qiang; Clements, Dave; Blankenberg, Daniel; Goecks, Jeremy; Taylor, James; Nekrutenko, Anton 分享 收藏
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A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer Wagner, Alex H.; Walsh, Brian; Mayfield, Georgia; Tamborero, David; Sonkin, Dmitriy; Krysiak, Kilannin; Deu-Pons, Jordi; Duren, Ryan P.; Gao, Jianjiong; McMurry, Julie; Patterson, Sara; Fitz, Catherine; Pitel, Beth A.; Sezerman, Ozman U.; Ellrott, Kyle; Warner, Jeremy L.; Rieke, Damian T.; Aittokallio, Tero; Cerami, Ethan; Ritter, Deborah I.; Schriml, Lynn M.; Freimuth, Robert R.; Haendel, Melissa; Raca, Gordana; Madhavan, Subha; Baudis, Michael; Beckmann, Jacques S.; Dienstmann, Rodrigo; Chakravarty, Debyani; Li, Xuan Shirley; Mockus, Susan; Elemento, Olivier; Schultz, Nikolaus; Lopez-Bigas, Nuria; Lawler, Mark; Goecks, Jeremy; Griffith, Malachi; Griffith, Obi L.; Margolin, Adam A. 分享 收藏
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Innate αβ T Cells Mediate Antitumor Immunity by Orchestrating Immunogenic Macrophage Programming Hundeyin, Mautin; Kurz, Emma; Mishra, Ankita; Rossi, Juan Andres Kochen; Liudahl, Shannon M.; Leis, Kenna R.; Mehrotra, Harshita; Kim, Mirhee; Torres, Luisana E.; Ogunsakin, Adesola; Link, Jason; Sears, Rosalie C.; Sivagnanam, Shamilene; Goecks, Jeremy; Islam, K. M. Sadeq; Dolgalev, Igor; Savadkar, Shivraj; Wang, Wei; Aykut, Berk; Leinwand, Joshua; Diskin, Brian; Adam, Salma; Israr, Muhammad; Gelas, Maeliss; Lish, Justin; Chin, Kathryn; Farooq, Mohammad Saad; Wadowski, Benjamin; Wu, Jingjing; Shah, Suhagi; Adeegbe, Dennis O.; Pushalkar, Smruti; Vasudevaraja, Varshini; Saxena, Deepak; Wong, Kwok-Kin; Coussens, Lisa M.; Miller, George 分享 收藏
Leveraging multi-omics tumor boards for precision medicine in the OHSU SMMART Treatments Program Keck, Jamie M.; Parmar, Swapnil; Kong, Ben; Mitri, Zahi; Corless, Christopher; Kolodzie, Annette; Creason, Allison; Goecks, Jeremy; Leyshock, Patrick; Siex, Kiara; Johnson, Brett E.; Patterson, Janice; Heiser, Laura; Olson, Anastasiya; Viehdorfer, Matt; Mayfield, Georgia; Laverdure, Jennifer; Gray, Joe W.; Mills, Gordon B.; Bergan, Raymond C. 分享 收藏
Standardization and coordination of variant interpretation knowledgebases improves clinical genome actionability Wagner, Alex H.; Walsh, Brian; Sonkin, Dmitriy; Dienstmann, Rodrigo; Li, Xuan S.; Beckmann, Jacques; Mayfield, Georgia; Tamborero, David; Lopez-Bigas, Nuria; Goecks, Jeremy; Margolin, Adam; Griffith, Malachi; Griffith, Obi 分享 收藏
SMMART: Serial measurements of molecular and architectural responses to therapy Johnson, Brett; Keck, Jamie; Morris, Max; Siex, Kiara; Kolodzie, Annette; Parmar, Swapnil; Riesterer, Jessica; Chin, Koei; Gibbs, Summer; Heiser, Laura; Spellman, Paul; Ellrott, Kyle; Babur, Ozgun; Demir, Emek; Margolin, Adam; Goecks, Jeremy; Coussens, Lisa; Bergan, Raymond; Gray, Joe 分享 收藏
Practical Computational Reproducibility in the Life Sciences Gruening, Bjoern; Chilton, John; Koester, Johannes; Dale, Ryan; Soranzo, Nicola; van den Beek, Marius; Goecks, Jeremy; Backofen, Rolf; Nekrutenko, Anton; Taylor, James 分享 收藏
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update 用于可访问，可复制和协作生物医学分析的Galaxy平台: 2018更新 Afgan, Enis; Baker, Dannon; Batut, Berenice; van den Beek, Marius; Bouvier, Dave; Cech, Martin; Chilton, John; Clements, Dave; Coraor, Nate; Gruening, Bjoern A.; Guerler, Aysam; Hillman-Jackson, Jennifer; Hiltemann, Saskia; Jalili, Vahid; Rasche, Helena; Soranzo, Nicola; Goecks, Jeremy; Taylor, James; Nekrutenko, Anton; Blankenberg, Daniel 分享 收藏
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