Gail Rosen - Publications, H-index & Citations

Gail Rosen

drexel university

29H指数

253论文数

7.7K被引数

收录论文 36

发表时间

Nevermore: Target-Conditioned Protein–Ligand Representation Learning for Multi-Objective Lead Optimization with Database-Grounded Retrieval 永不再：基于数据库检索的目标条件蛋白质-配体表示学习用于多目标先导化合物优化

Biology

IF3.5

2026-06-23

OAAI

Mohammad Saleh Refahi; Milad Toutounchian; Bahrad A. Sokhansanj; Hyunwoo Yoo; James R. Brown; Hai-Feng Ji; Gail L. Rosen

Regulating genome language models: navigating policy challenges at the intersection of AI and genetics 调控基因组语言模型：探索人工智能与遗传学交叉领域的政策挑战

Human Genetics

IF3.6

2025-09-16

OAAI

Bahrad A. Sokhansanj; Gail L. Rosen

Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair 更正：开发和广泛测序一个得到广泛认可的“Genome in a Bottle”匹配的肿瘤-正常配对样本

Scientific Data

IF6.9

2025-08-08

OAAI

Jennifer H. McDaniel; Vaidehi Patel; Nathan D. Olson; Hua-Jun He; Zhiyong He; Kenneth D. Cole; Alexander A. Gooden; Anthony Schmitt; Kristin Sikkink; Fritz J. Sedlazeck; Harsha Doddapaneni; Shalini N. Jhangiani; Donna M. Muzny; Marie-Claude Gingras; Heer Mehta; Sairam Behera; Luis F. Paulin; Alex R. Hastie; Hung-Chun Yu; Victor Weigman; Alison Rojas; Katie Kennedy; Jamie Remington; Isai Salas-González; Mitch Sudkamp; Kelly Wiseman; Bryan R. Lajoie; Shawn Levy; Miten Jain; Stuart Akeson; Giuseppe Narzisi; Zoe Steinsnyder; Catherine Reeves; Jennifer Shelton; Sarah B. Kingan; Christine Lambert; Primo Baybayan; Aaron M. Wenger; Ian J. McLaughlin; Aaron Adamson; Christopher Kingsley; Melanie Wescott; Young Kim; Benedict Paten; Jimin Park; Ivo Violich; Karen H. Miga; Joshua Gardner; Brandy McNulty; Gail L. Rosen; Rajiv McCoy; Francesco Brundu; Erfan Sayyari; Konrad Scheffler; Sean Truong; Severine Catreux; Lesley Chapman Hannah; Doron Lipson; Hila Benjamin; Nika Iremadze; Ilya Soifer; Gat Krieger; Stephen Eacker; Mary Wood; Erin Cross; Greg Husar; Stephen Gross; Michael Vernich; Mikhail Kolmogorov; Tanveer Ahmad; Ayse G. Keskus; Asher Bryant; Francoise Thibaud-Nissen; Jonathan Trow; Jacqueline Proszynski; Jeremy Wain Hirschberg; Krista Ryon; Christopher E. Mason; Mital S. Bhakta; J. Zachary Sanborn; Elizabeth M. Munding; Justin Wagner; Chunlin Xiao; Andrew S. Liss; Justin M. Zook

Enhancing nucleotide sequence representations in genomic analysis with contrastive optimization 通过对比优化增强基因组分析中的核苷酸序列表示

COMMUNICATIONS BIOLOGY

IF5.1

2025-03-29

OAAI

Refahi, Mohammadsaleh; Sokhansanj, Bahrad A.; Mell, Joshua C.; Brown, James R.; Yoo, Hyunwoo; Hearne, Gavin; Rosen, Gail L.

The Role and Applications of Artificial Intelligence in the Treatment of Chronic Pain 人工智能在慢性疼痛治疗中的作用与应用

CURRENT PAIN AND HEADACHE REPORTS

IF3.5

2024-06-01

PREAI

Meier, Tiffany A.; Refahi, Mohammad S.; Hearne, Gavin; Restifo, Daniele S.; Munoz-Acuna, Ricardo; Rosen, Gail L.; Woloszynek, Stephen

Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-05-02

OAAI

Chandraghatgi, Rohan; Ji, Hai-Feng; Rosen, Gail L.; Sokhansanj, Bahrad A.

Continued analysis of extensive data towards Genome in a Bottle benchmarks for a new tumor normal pair

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Wagner, Justin; McDaniel, Jennifer; Rosen, Gail L.; Olson, Nathan D.; Patel, Vaidehi; Xiao, Chunlin; Liss, Andrew; Zook, Justin

Physiological and evolutionary contexts of a new symbiotic species from the nitrogen-recycling gut community of turtle ants

ISME JOURNAL

IF10

2023-08-09

PREAI

Bechade, Benoit; Cabuslay, Christian S.; Hu, Yi; Mendonca, Caroll M.; Hassanpour, Bahareh; Lin, Jonathan Y.; Su, Yangzhou; Fiers, Valerie J.; Anandarajan, Dharman; Lu, Richard; Olson, Chandler J.; Duplais, Christophe; Rosen, Gail L.; Moreau, Corrie S.; Aristilde, Ludmilla; Wertz, John T.; Russell, Jacob A.

Candidate variants in DNA replication and repair genes in early-onset renal cell carcinoma patients referred for germline testing (vol 24, 212, 2023)

BMC GENOMICS

IF3.7

2023-07-10

OAAI

Demidova, Elena V. V.; Serebriiskii, Ilya G. G.; Vlasenkova, Ramilia; Kelow, Simon; Andrake, Mark D. D.; Hartman, Tiffiney R. R.; Kent, Tatiana; Virtucio, James; Rosen, Gail L. L.; Pomerantz, Richard T. T.; Dunbrack Jr, Roland L. L.; Golemis, Erica A. A.; Hall, Michael J. J.; Chen, David Y. T.; Daly, Mary B. B.; Arora, Sanjeevani

Candidate variants in DNA replication and repair genes in early-onset renal cell carcinoma patients referred for germline testing

BMC GENOMICS

IF3.7

2023-04-24

OAAI

Demidova, Elena, V; Serebriiskii, Ilya G.; Vlasenkova, Ramilia; Kelow, Simon; Andrake, Mark D.; Hartman, Tiffiney R.; Kent, Tatiana; Virtucio, James; Rosen, Gail L.; Pomerantz, Richard T.; Dunbrack, Roland L., Jr.; Golemis, Erica A.; Hall, Michael J.; Chen, David Y. T.; Daly, Mary B.; Arora, Sanjeevani

Sequencing a new broadly-consented tumor/normal cell line for a Genome in a Bottle Benchmark

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Rosen, Gail; Wagner, Justin; Liss, Andrew; Zook, Justin

Interpretable and Predictive Deep Neural Network Modeling of the SARS-CoV-2 Spike Protein Sequence to Predict COVID-19 Disease Severity

BIOLOGY-BASEL

IF3.5

2022-12-08

OAAI

Sokhansanj, Bahrad A.; Zhao, Zhengqiao; Rosen, Gail L.

Predicting COVID-19 disease severity from SARS-CoV-2 spike protein sequence by mixed effects machine learning 基于混合效应机器学习的SARS-CoV-2刺突蛋白序列预测新型冠状病毒肺炎疾病严重程度

COMPUTERS IN BIOLOGY AND MEDICINE

IF6.3

2022-10-01

OAAI

Sokhansanj, Bahrad A.; Rosen, Gail L.

Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences

MSYSTEMS

IF4.6

2022-04-26

OAAI

Sokhansanj, Bahrad A.; Rosen, Gail L.

Critical Assessment of Metagenome Interpretation: the second round of challenges

NATURE METHODS

IF32.1

2022-04-08

136

OAAI

Meyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J.; Brown, C. Titus; Buchmann, Jan; Buluc, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T. L. C.; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E.; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A.; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jorgensen, Tue Sparholt; Kieser, Silas D.; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R.; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R.; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C.; Porter, Jacob S.; Rasmussen, Simon; Rees, Evan R.; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L.; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sorensen, Soren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Haeussler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn

Teaching Microbiome Analysis: From Design to Computation Through Inquiry

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-10-29

OAAI

Rosen, Gail L.; Hammrich, Penny

Amino Acid k-mer Feature Extraction for Quantitative Antimicrobial Resistance (AMR) Prediction by Machine Learning and Model Interpretation for Biological Insights 通过机器学习和模型解释进行定量抗菌素耐药性 (AMR) 预测的氨基酸k-mer特征提取，以获得生物学见解

BIOLOGY-BASEL

IF3.5

2020-10-28

OAAI

ValizadehAslani, Taha; Zhao, Zhengqiao; Sokhansanj, Bahrad A.; Rosen, Gail L.

Emerging Priorities for Microbiome Research 微生物组研究的新兴优先事项

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-02-19

131

OAAI

Cullen, Chad M.; Aneja, Kawalpreet K.; Beyhan, Sinem; Cho, Clara E.; Woloszynek, Stephen; Convertino, Matteo; McCoy, Sophie J.; Zhang, Yanyan; Anderson, Matthew Z.; Alvarez-Ponce, David; Smirnova, Ekaterina; Karstens, Lisa; Dorrestein, Pieter C.; Li, Hongzhe; Sen Gupta, Ananya; Cheung, Kevin; Powers, Jennifer Gloeckner; Zhao, Zhengqiao; Rosen, Gail L.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (vol 18, 182, 2017)宏基因组分类器的综合基准和集成方法 (第18卷，182卷，2017)

GENOME BIOLOGY

IF9.4

2019-04-05

OAAI

McIntyre, Alexa B. R.; Ounit, Rachid; Afshinnekoo, Ebrahim; Prill, Robert J.; Henaff, Elizabeth; Alexander, Noah; Minot, Samuel S.; Danko, David; Foox, Jonathan; Ahsanuddin, Sofia; Tighe, Scott; Hasan, Nur A.; Subramanian, Poorani; Moffat, Kelly; Levy, Shawn; Lonardi, Stefano; Greenfield, Nick; Colwell, Rita R.; Rosen, Gail L.; Mason, Christopher E.

Extensions to Online Feature Selection Using Bagging and Boosting

IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS

IF8.9

2018-09-01

OAAI

Ditzler, Gregory; LaBarck, Joseph; Ritchie, James; Rosen, Gail; Polikar, Robi

研究方向