Andrea C. Vaiana - Publications, H-index & Citations

Andrea C. Vaiana

Arizona State University

17H指数

82论文数

1.6K被引数

收录论文 34

发表时间

Transient non-local interactions dominate the dynamics of measles virus NTAIL 瞬时非局部相互作用主导了麻疹病毒NTAIL的动力学。

COMMUNICATIONS CHEMISTRY

IF6.2

2025-10-06

OAAI

Otteson, Lillian; Nagy, Gabor; Kunkel, John; Kodis, Gerdenis; Bock, Lars V.; Bignon, Christophe; Longhi, Sonia; Zheng, Wenwei; Grubmuller, Helmut; Vaiana, Andrea C.; Vaiana, Sara M.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

NATURE METHODS

IF32.1

2024-06-25

OAAI

Lawson, Catherine L.; Kryshtafovych, Andriy; Pintilie, Grigore D.; Burley, Stephen K.; Cerny, Jiri; Chen, Vincent B.; Emsley, Paul; Gobbi, Alberto; Joachimiak, Andrzej; Noreng, Sigrid; Prisant, Michael G.; Read, Randy J.; Richardson, Jane S.; Rohou, Alexis L.; Schneider, Bohdan; Sellers, Benjamin D.; Shao, Chenghua; Sourial, Elizabeth; Williams, Chris I.; Williams, Christopher J.; Yang, Ying; Abbaraju, Venkat; Afonine, Pavel V.; Baker, Matthew L.; Bond, Paul S.; Blundell, Tom L.; Burnley, Tom; Campbell, Arthur; Cao, Renzhi; Cheng, Jianlin; Chojnowski, Grzegorz; Cowtan, K. D.; DiMaio, Frank; Esmaeeli, Reza; Giri, Nabin; Grubmueller, Helmut; Hoh, Soon Wen; Hou, Jie; Hryc, Corey F.; Hunte, Carola; Igaev, Maxim; Joseph, Agnel P.; Kao, Wei-Chun; Kihara, Daisuke; Kumar, Dilip; Lang, Lijun; Lin, Sean; Subramaniya, Sai R. Maddhuri Venkata; Mittal, Sumit; Mondal, Arup; Moriarty, Nigel W.; Muenks, Andrew; Murshudov, Garib N.; Nicholls, Robert A.; Olek, Mateusz; Palmer, Colin M.; Perez, Alberto; Pohjolainen, Emmi; Pothula, Karunakar R.; Rowley, Christopher N.; Sarkar, Daipayan; Schaefer, Luisa U.; Schlicksup, Christopher J.; Schroeder, Gunnar F.; Shekhar, Mrinal; Si, Dong; Singharoy, Abhishek; Sobolev, Oleg V.; Terashi, Genki; Vaiana, Andrea C.; Vedithi, Sundeep C.; Verburgt, Jacob; Wang, Xiao; Warshamanage, Rangana; Winn, Martyn D.; Weyand, Simone; Yamashita, Keitaro; Zhao, Minglei; Schmid, Michael F.; Berman, Helen M.; Chiu, Wah

Different responses of mice and rats hippocampus CA1 pyramidal neurons to in vitro and in vivo-like inputs

FRONTIERS IN CELLULAR NEUROSCIENCE

IF4

2023-12-07

OAAI

Vitale, Paola; Librizzi, Fabio; Vaiana, Andrea C.; Capuana, Elisa; Pezzoli, Maurizio; Shi, Ying; Romani, Armando; Migliore, Michele; Migliore, Rosanna

Discrimination between cyclic nucleotides in a cyclic nucleotide-gated ion channel

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2023-03-27

OAAI

Pan, Yangang; Pohjolainen, Emmi; Schmidpeter, Philipp A. M.; Vaiana, Andrea C.; Nimigean, Crina M.; Grubmueller, Helmut; Scheuring, Simon

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

NATURE METHODS

IF32.1

2021-02-04

OAAI

Lawson, Catherine L.; Kryshtafovych, Andriy; Adams, Paul D.; Afonine, Pavel, V; Baker, Matthew L.; Barad, Benjamin A.; Bond, Paul; Burnley, Tom; Cao, Renzhi; Cheng, Jianlin; Chojnowski, Grzegorz; Cowtan, Kevin; Dill, Ken A.; DiMaio, Frank; Farrell, Daniel P.; Fraser, James S.; Herzik, Mark A., Jr.; Hoh, Soon Wen; Hou, Jie; Hung, Li-Wei; Igaev, Maxim; Joseph, Agnel P.; Kihara, Daisuke; Kumar, Dilip; Mittal, Sumit; Monastyrskyy, Bohdan; Olek, Mateusz; Palmer, Colin M.; Patwardhan, Ardan; Perez, Alberto; Pfab, Jonas; Pintilie, Grigore D.; Richardson, Jane S.; Rosenthal, Peter B.; Sarkar, Daipayan; Schafer, Luisa U.; Schmid, Michael F.; Schroder, Gunnar F.; Shekhar, Mrinal; Si, Dong; Singharoy, Abishek; Terashi, Genki; Terwilliger, Thomas C.; Vaiana, Andrea; Wang, Liguo; Wang, Zhe; Wankowicz, Stephanie A.; Williams, Christopher J.; Winn, Martyn; Wu, Tianqi; Yu, Xiaodi; Zhang, Kaiming; Berman, Helen M.; Chiu, Wah

Automated cryo-EM structure refinement using correlation-driven molecular dynamics 使用相关驱动的分子动力学自动cryo-em结构精修

ELIFE

IF0

2019-03-04

OAAI

Igaev, Maxim; Kutzner, Carsten; Bock, Lars, V; Vaiana, Andrea C.; Grubmueller, Helmut

Fully Automated Correlation-Based Refinement of Atomic Models into High Resolution Cryo-EM Density Maps

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Vaiana, Andrea C.; Igaev, Maxim; Kutzner, Carsten; Grubmueller, Helmut

Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P

MOLECULAR CELL

IF16.6

2017-11-01

121

OAAI

Huter, Paul; Arenz, Stefan; Bock, Lars V.; Graf, Michael; Frister, Jan Ole; Heuer, Andre; Peil, Lauri; Starosta, Agata L.; Wohlgemuth, Ingo; Peske, Frank; Novacek, Jiri; Berninghausen, Otto; Grubmueller, Helmut; Tenson, Tanel; Beckmann, Roland; Rodnina, Marina V.; Vaiana, Andrea C.; Wilson, Daniel N.

Mechanisms of Sequence Dependent Translational Stalling

BIOPHYSICAL JOURNAL

IF3.1

2017-02-01

OAAI

Bock, Lars V.; Huter, Paul P. H.; Arenz, Stefan; Graf, Michael; Grubmueller, Helmut; Wilson, Daniel; Vaiana, Andrea C.

A combined cryo-EM and molecular dynamics approach reveals the mechanism of ErmBL-mediated translation arrest

NATURE COMMUNICATIONS

IF15.7

2016-07-06

OAAI

Arenz, Stefan; Bock, Lars V.; Graf, Michael; Innis, C. Axel; Beckmann, Roland; Grubmueller, Helmut; Vaiana, Andrea C.; Wilson, Daniel N.

Low Energy Barriers and a Dynamic Contact Network between Ribosomal Subunits Enable Rapid tRNA Translocation

BIOPHYSICAL JOURNAL

IF3.1

2016-02-01

OAAI

Bock, Lars V.; Blau, Christian; Vaiana, Andrea C.; Grubmuller, Helmut

ErmBL Translation on the Ribosome in the Presence of Erythromycin is Stalled by Inhibition of Peptide Bond Formation

BIOPHYSICAL JOURNAL

IF3.1

2016-02-01

OAAI

Bock, Lars V.; Arenz, Stefan; Wilson, Daniel N.; Grubmueller, Helmut; Vaiana, Andrea C.

Dynamic contact network between ribosomal subunits enables rapid large-scale rotation during spontaneous translocation

NUCLEIC ACIDS RESEARCH

IF13.1

2015-06-24

OAAI

Bock, Lars V.; Blau, Christian; Vaiana, Andrea C.; Grubmueller, Helmut

Bayesian cryo-EM Refinement

BIOPHYSICAL JOURNAL

IF3.1

2015-01-01

OAAI

Blau, Christian; Bock, Lars; Kutzner, Carsten; Vaiana, Andrea; Grubmuller, Helmut

Structural Determinants of Hybrid State Intermediates of the Bacterial Ribosome

BIOPHYSICAL JOURNAL

IF3.1

2015-01-01

OAAI

Vaiana, Andrea C.; Kutzner, Carsten; Bock, Lars V.; Blau, Christian; Grubmueller, Helmut

Balanced Interactions between Ribosomal Subunits Allow Rapid Large-Scale Rotation

BIOPHYSICAL JOURNAL

IF3.1

2015-01-01

OAAI

Bock, Lars V.; Blau, Christian; Vaiana, Andrea C.; Grubmueller, Helmut

Concerted Interactions between Ribosomal Subunits Allow for Large-Scale Rotations

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Bock, Lars V.; Blau, Christian; Vaiana, Andrea C.; Grubmuller, Helmut

Ribosomal Kinetics and Concerted Motions from Nanoseconds to Seconds

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Blau, Christian; Bock, Lars V.; Schroeder, Gunnar F.; Davydov, Iakov; Fischer, Niels; Stark, Holger; Rodnina, Marina V.; Vaiana, Andrea C.; Grubmuller, Helmut

Rapid and Stable Transfer RNA Translocation through the Ribosome Ensured by Specific Contact Mechanisms

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Bock, Lars V.; Blau, Christian; Schroeder, Gunnar F.; Davydov, Iakov; Fischer, Niels; Stark, Holger; Rodnina, Marina V.; Vaiana, Andrea C.; Grubmuller, Helmut

Refining Crystal Structures Against Cryo-EM Data using Molecular Dynamics Simulations to Obtain a Complete Atomistic Pathway of Transfer RNA Translocation

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Vaiana, Andrea C.; Kutzner, Carsten; Bock, Lars V.; Blau, Christian; Grubmuller, Helmut

研究方向