Jennifer E. Phillips‐Cremins

University of Pennsylvania

35H指数

125论文数

1.0W被引数

收录论文 40

发表时间

Persistent chromatin alterations and gene expression reprogramming follow widespread DNA damage in glioblastoma 广泛DNA损伤后的胶质母细胞瘤中持续的染色质改变和基因表达重编程

Nature Communications

IF15.7

2026-08-29

OAAI

Aram S. Modrek; Keerthivasan R. Chandradoss; Catherine Do; Ravesanker Ezhilarasan; Theodore Sakellaropoulos; Jerome Karp; Yingwen Ding; Ze-Yan Zhang; Maria L. G. Quiloan; Melanie Graciani; Giulia Cova; Jennifer E. Phillips-Cremins; Erik P. Sulman; Jane A. Skok

MASTR-seq enables multiplexed analysis of short tandem repeats with sequencing MASTR-seq技术能够通过测序实现短串联重复序列的多重分析。

Cell Reports Methods

IF4.5

2026-03-17

OAAI

Chuanbin Su; Han-Seul Ryu; Keerthivasan Raanin Chandradoss; Thomas Malachowski; Ravi Boya; Linda Zhou; Hoa Emma Nguyen; Esteban O. Mazzoni; Kristen J. Brennand; Jennifer E. Phillips-Cremins

An integrated view of the structure and function of the human 4D nucleome 人类4D核体结构与功能的综合视图

Nature

IF48.5

2025-12-17

OAAI

Job Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue

Autism spectrum disorder risk genes have convergent effects on transcription and neuronal firing patterns in primary neurons

GENOME RESEARCH

IF5.5

2025-11-01

PREAI

Paranjapye, Alekh; Ahmad, Rili; Su, Steven; Waldman, Abraham J.; Phillips-Cremins, Jennifer E.; Zhang, Shuo; Korb, Erica

FISHnet: detecting chromatin domains in single-cell sequential Oligopaints imaging data FISHnet：在单细胞顺序Oligopaints成像数据中检测染色质域

NATURE METHODS

IF32.1

2025-05-12

OAAI

Patel, Rohan; Pham, Kenneth; Chandrashekar, Harshini; Phillips-Cremins, Jennifer E.

B cell stimulation changes the structure and higher-order organization of the inactive X chromosome B细胞刺激改变了失活X染色体的结构和高级组织。

CELL REPORTS

IF6.9

2025-03-01

OAAI

Sierra, Isabel; Toothacre, Natalie E.; van der Weide, Robin H.; Lovell, Claudia D.; Nguyen, Son C.; Barnett, R. Jordan; Cook, Ashley L.; Ryu, Han-Seul; Pyfrom, Sarah; Wang, Harrison; Beiting, Daniel; Philips-Cremins, Jennifer E.; Joyce, Eric F.; Anguera, Montserrat C.

Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation

CELL GENOMICS

IF9

2024-08-01

OAAI

Titus, Katelyn R.; Simandi, Zoltan; Chandrashekar, Harshini; Paquet, Dominik; Phillips-Cremins, Jennifer E.

Post-transcriptional splicing can occur in a slow-moving zone around the gene

ELIFE

IF0

2024-04-05

OAAI

Cote, Allison; O'Farrell, Aoife; Dardani, Ian; Dunagin, Margaret; Cote, Chris; Wan, Yihan; Bayatpour, Sareh; Drexler, Heather L.; Alexander, Katherine A.; Chen, Fei; Wassie, Asmamaw T.; Patel, Rohan; Pham, Kenneth; Boyden, Edward S.; Berger, Shelly; Phillips-Cremins, Jennifer; Churchman, L. Stirling; Raj, Arjun

G-quadruplexes associated with R-loops promote CTCF binding 与R环相关的G-四链体促进CTCF结合

MOLECULAR CELL

IF16.6

2023-09-01

OAAI

Wulfridge, Phillip; Yan, Qingqing; Rell, Nathaniel; Doherty, John; Jacobson, Skye; Offley, Sarah; Deliard, Sandra; Feng, Kelly; Phillips-Cremins, Jennifer E.; Gardini, Alessandro; Sarma, Kavitha

Spatial and temporal organization of the genome Current state and future aims of the 4D nucleome project

MOLECULAR CELL

IF16.6

2023-08-01

OAAI

Dekker, Job; Alber, Frank; Aufmkolk, Sarah; Beliveau, Brian J.; Bruneau, Benoit G.; Belmont, Andrew S.; Bintu, Lacramioara; Boettiger, Alistair; Calandrelli, Riccardo; Disteche, Christine M.; Gilbert, David M.; Gregor, Thomas; Hansen, Anders S.; Huang, Bo; Huangfu, Danwei; Kalhor, Reza; Leslie, Christina S.; Li, Wenbo; Li, Yun; Ma, Jian; Noble, William S.; Park, Peter J.; Phillips-Cremins, Jennifer E.; Pollard, Katherine S.; Rafelski, Susanne M.; Ren, Bing; Ruan, Yijun; Shav-Tal, Yaron; Shen, Yin; Shendure, Jay; Shu, Xiaokun; Strambio-De-Castillia, Caterina; Vertii, Anastassiia; Zhang, Huaiying; Zhong, Sheng

Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions 来自12,834例精神分裂症相关的体细胞拷贝数变异揭示了NRXN1和ABCB11的反复破坏

CELL GENOMICS

IF9

2023-08-01

OAAI

Maury, Eduardo A.; Sherman, Maxwell A.; Genovese, Giulio; Gilgenast, Thomas G.; Kamath, Tushar; Burris, S. J.; Rajarajan, Prashanth; Flaherty, Erin; Akbarian, Schahram; Chess, Andrew; McCarroll, Steven A.; Loh, Po-Ru; Phillips-Cremins, Jennifer E.; Brennand, Kristen J.; Macosko, Evan Z.; Walters, James T. R.; O'Donovan, Michael; Sullivan, Patrick; Sebat, Jonathan; Lee, Eunjung A.; Walsh, Christopher A.

Cohesin-dependence of neuronal gene expression relates to chromatin loop length 神经元基因表达的Cohesin依赖性与染色质环长度有关

ELIFE

IF0

2022-04-26

OAAI

Calderon, Lesly; Weiss, Felix D.; Beagan, Jonathan A.; Oliveira, Marta S.; Georgieva, Radina; Wang, Yi-Fang; Carroll, Thomas S.; Dharmalingam, Gopuraja; Gong, Wanfeng; Tossell, Kyoko; de Paola, Vincenzo; Whilding, Chad; Ungless, Mark A.; Fisher, Amanda G.; Phillips-Cremins, Jennifer E.; Merkenschlager, Matthias

Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice

NATURE COMMUNICATIONS

IF15.7

2022-01-10

OAAI

Kwon, Deborah Y.; Xu, Bing; Hu, Peng; Zhao, Ying-Tao; Beagan, Jonathan A.; Nofziger, Jonathan H.; Cui, Yue; Phillips-Cremins, Jennifer E.; Blendy, Julie A.; Wu, Hao; Zhou, Zhaolan

See(quence) and ye shall find: higher-order genome folding in intact single cells

MOLECULAR CELL

IF16.6

2021-03-01

OAAI

Pham, Kenneth; Nikish, Alexandria; Phillips-Cremins, Jennifer E.

Alteration of genome folding via contact domain boundary insertion

NATURE GENETICS

IF31.8

2020-08-31

OAAI

Zhang, Di; Huang, Peng; Sharma, Malini; Keller, Cheryl A.; Giardine, Belinda; Zhang, Haoyue; Gilgenast, Thomas G.; Phillips-Cremins, Jennifer E.; Hardison, Ross C.; Blobel, Gerd A.

3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data

GENOME BIOLOGY

IF9.4

2020-08-28

OAAI

Fernandez, Lindsey R.; Gilgenast, Thomas G.; Phillips-Cremins, Jennifer E.

Promoter-anchored chromatin interactions predicted from genetic analysis of epigenomic data

NATURE COMMUNICATIONS

IF15.7

2020-04-28

OAAI

Wu, Yang; Qi, Ting; Wang, Huanwei; Zhang, Futao; Zheng, Zhili; Phillips-Cremins, Jennifer E.; Deary, Ian J.; McRae, Allan F.; Wray, Naomi R.; Zeng, Jian; Yang, Jian

On the existence and functionality of topologically associating domains

NATURE GENETICS

IF31.8

2020-01-10

249

OAAI

Beagan, Jonathan A.; Phillips-Cremins, Jennifer E.

A subset of topologically associating domains fold into mesoscale core-periphery networks

SCIENTIFIC REPORTS

IF3.9

2019-07-02

OAAI

Huang, Harvey; Chen, Sunnia T.; Titus, Katelyn R.; Emerson, Daniel J.; Bassett, Danielle S.; Phillips-Cremins, Jennifer E.

LADL: light-activated dynamic looping for endogenous gene expression control

NATURE METHODS

IF32.1

2019-06-24

112

OAAI

Kim, Ji Hun; Rege, Mayuri; Valeri, Jacqueline; Dunagin, Margaret C.; Metzger, Aryeh; Titus, Katelyn R.; Gilgenast, Thomas G.; Gong, Wanfeng; Beagan, Jonathan A.; Raj, Arjun; Phillips-Cremins, Jennifer E.

研究方向