Jaroslav Koča - Publications, H-index & Citations

Jaroslav Koča

masaryk university brno

52H指数

524论文数

1.1W被引数

收录论文 86

发表时间

NAChRDB: A Web Resource of Structure-Function Annotations to Unravel the Allostery of Nicotinic Acetylcholine Receptors NAChRDB: 结构功能注释的网络资源，以揭示烟碱乙酰胆碱受体的变构

ACS OMEGA

IF4.3

2021-08-31

OAAI

Chareshneu, Aliaksei; Pant, Purbaj; Ramos, Ravi Jose Tristao; Sehmal, David; Gokbel, Tugrul; Ionescu, Crina-Maria; Koca, Jaroslav

Optimized SQE atomic charges for peptides accessible via a web application (vol 13, 45, 2021)

JOURNAL OF CHEMINFORMATICS

IF5.7

2021-07-14

OAAI

Schindler, Ondrej; Racek, Tomas; Marsavelski, Aleksandra; Koca, Jaroslav; Berka, Karel; Svobodova, Radka

Optimized SQE atomic charges for peptides accessible via a web application

JOURNAL OF CHEMINFORMATICS

IF5.7

2021-06-30

OAAI

Schindler, Ondrej; Racek, Tomas; Marsavelski, Aleksandra; Koca, Jaroslav; Berka, Karel; Svobodova, Radka

Uncovering of cytochrome P450 anatomy by SecStrAnnotator

SCIENTIFIC REPORTS

IF3.9

2021-06-11

OAAI

Midlik, Adam; Navratilova, Veronika; Moturu, Taraka Ramji; Koca, Jaroslav; Svobodova, Radka; Berka, Karel

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures Mol * Viewer: 用于3D可视化和分析大型生物分子结构的现代web应用程序

NUCLEIC ACIDS RESEARCH

IF13.1

2021-05-06

587

OAAI

Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodova, Radka; Berka, Karel; Bazgier, Vaclav; Velankar, Sameer; Burley, Stephen K.; Koca, Jaroslav; Rose, Alexander S.

Pan-selectin inhibitors as potential therapeutics for COVID-19 treatment: in silico screening study

GLYCOBIOLOGY

IF3.3

2021-04-01

OAAI

Smak, Pavel; Chandrabose, Selvaraj; Tvaroska, Igor; Koca, Jaroslav

Catalytic Mechanism of Processive GlfT2: Transition Path Sampling Investigation of Substrate Translocation 进行性GlfT2的催化机制: 底物易位的过渡路径采样研究

ACS OMEGA

IF4.3

2020-08-21

OAAI

Janos, Pavel; Tvaroska, Igor; Dellago, Christoph; Koca, Jaroslav

The CH-π Interaction in Protein-Carbohydrate Binding: Bioinformatics and In Vitro Quantification 蛋白质-碳水化合物结合中的ch-π 相互作用: 生物信息学和体外定量

CHEMISTRY-A EUROPEAN JOURNAL

IF3.7

2020-07-27

PREAI

Houser, Josef; Kozmon, Stanislav; Mishra, Deepti; Hammerova, Zuzana; Wimmerova, Michaela; Koca, Jaroslav

Selectins-The Two Dr. Jekyll and Mr. Hyde Faces of Adhesion Molecules-A Review Selectins-粘附分子的两个Jekyll博士和Hyde先生面孔-综述

MOLECULES

IF4.6

2020-06-19

OAAI

Tvaroska, Igor; Selvaraj, Chandrabose; Koca, Jaroslav

Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges

NUCLEIC ACIDS RESEARCH

IF13.1

2020-05-13

OAAI

Racek, Tomas; Schindler, Ondrej; Tousek, Dominik; Horsky, Vladimir; Berka, Karel; Koca, Jaroslav; Svobodova, Radka

PDBe: improved findability of macromolecular structure data in the PDB PDBe: 提高PDB中大分子结构数据的可发现性

NUCLEIC ACIDS RESEARCH

IF13.1

2019-11-06

OAAI

Armstrong, David R.; Berrisford, John M.; Conroy, Matthew J.; Gutmanas, Aleksandras; Anyango, Stephen; Choudhary, Preeti; Clark, Alice R.; Dana, Jose M.; Deshpande, Mandar; Dunlop, Roisin; Gane, Paul; Gaborova, Romana; Gupta, Deepti; Haslam, Pauline; Koca, Jaroslav; Mak, Lora; Mir, Saqib; Mukhopadhyay, Abhik; Nadzirin, Nurul; Nair, Sreenath; Paysan-Lafosse, Typhaine; Pravda, Lukas; Sehnal, David; Salih, Osman; Smart, Oliver; Tolchard, James; Varadi, Mihaly; Svobodova-Varekova, Radka; Zaki, Hossam; Kleywegt, Gerard J.; Velankar, Sameer

PDBe-KB: a community-driven resource for structural and functional annotations

NUCLEIC ACIDS RESEARCH

IF13.1

2019-10-04

OAAI

Varadi, Mihaly; Bcrrisford, John; Deshpande, Mandar; Nair, Sreenath S.; Gutmanas, Aleksandras; Armstrong, David; Pravda, Lukas; Al-Lazikani, Bissan; Anyango, Stephen; Barton, Geoffrey J.; Berka, Karel; Blundell, Tom; Borkakoti, Neera; Dana, Jose; Das, Sayoni; Dey, Sucharita; Di Micco, Patrizio; Fraternali, Franca; Gibson, Toby; Helmer-Citterich, Manuela; Hoksza, David; Huang, Liang-Chin; Jain, Rishabh; Jubb, Harry; Kannas, Christos; Kannan, Natarajan; Koca, Jaroslav; Krivak, Radoslav; Kumar, Manjeet; Levy, Emmanuel D.; Madeira, F.; Madhusudhan, M. S.; Martell, Henry J.; MacGowan, Stuart; McGreig, Jake E.; Mir, Saqib; Mukhopadhyay, Abhik; Parca, Luca; Paysan-Lafosse, Typhaine; Radusky, Leandro; Ribeiro, Antonio; Serrano, Luis; Sillitoe, Ian; Singh, Gulzar; Skoda, Petr; Svobodova, Radka; Tyzack, Jonathan; Valencia, Alfonso; Fernandez, Eloy Villasclaras; Vranken, Wim; Wass, Mark; Thornton, Janet; Sternberg, Michael; Orengo, Christine; Velankar, Sameer

Protein Data Bank: the single global archive for 3D macromolecular structure data

NUCLEIC ACIDS RESEARCH

IF13.1

2018-10-24

682

OAAI

Burley, Stephen K.; Berman, Helen M.; Bhikadiya, Charmi; Bi, Chunxiao; Chen, Li; Di Costanzo, Luigi; Christie, Cole; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel Kramer; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Periskova, Irina; Randle, Chris; Rose, Alexander; Sekharan, Monica; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John; Young, Jasmine; Zardecki, Christine; Zhuravleva, Marina; Kurisu, Genji; Nakamura, Haruki; Kengaku, Yumiko; Cho, Hasumi; Sato, Junko; Kim, Ju Yaen; Ikegawa, Yasuyo; Nakagawa, Atsushi; Yamashita, Reiko; Kudou, Takahiro; Bekker, Gert-Jan; Suzuki, Hirofumi; Iwata, Takeshi; Yokochi, Masashi; Kobayashi, Naohiro; Fujiwara, Toshimichi; Velankar, Sameer; Kleywegt, Gerard J.; Anyango, Stephen; Armstrong, David R.; Berrisford, John M.; Conroy, Matthew J.; Dana, Jose M.; Deshpande, Mandar; Gane, Paul; Gaborova, Romana; Gupta, Deepti; Gutmanas, Aleksandras; Koca, Jaroslav; Mak, Lora; Mir, Saqib; Mukhopadhyay, Abhik; Nadzirin, Nurul; Nair, Sreenath; Patwardhan, Ardan; Paysan-Lafosse, Typhaine; Pravda, Lukas; Salih, Osman; Sehnal, David; Varadi, Mihaly; Varekova, Radka; Markley, John L.; Hoch, Jeffrey C.; Romero, Pedro R.; Baskaran, Kumaran; Maziuk, Dimitri; Ulrich, Eldon L.; Wedell, Jonathan R.; Yao, Hongyang; Livny, Miron; Ioannidis, Yannis E.

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)MOLEonline: 用于分析渠道、隧道和孔隙的基于网络的工具 (2018更新)

NUCLEIC ACIDS RESEARCH

IF13.1

2018-04-30

203

OAAI

Pravda, Lukas; Sehnal, David; Tousek, Dominik; Navratilova, Veronika; Bazgier, Vaclav; Berka, Karel; Varekova, Radka Svobodova; Koca, Jaroslav; Otyepka, Michal

Channelsdb and Moleonline - Database and Tool for Analysis of Biomacromolecular Tunnels and Pores

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Pravda, Lukas; Sehnal, David; Berka, Karel; Navratilova, Veronika; Tousek, Dominik; Bazgier, Vaclav; Varekova, Radka Svobodova; Otyepka, Michal; Koca, Jaroslav

Interactive 3D Macromolecular Structure Data Mining with MolQL and Litemol Suite

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Sehnal, David; Deshpande, Mandar; Rose, Alexander; Pravda, Lukas; Midlik, Adam; Varekova, Radka Svobodova; Mir, Saqib; Berka, Karel; Velankar, Sameer; Koca, Jaroslav

Binding Free Energy Calculation of Protein-Carbohydrate Complexes: Learnings so Far

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Mishra, Sushil K.; Koca, Jaroslav; Yamaguchi, Yoshiki

Automated Training of ReaxFF Reactive Force Fields for Energetics of Enzymatic Reactions 用于酶促反应能量学的ReaxFF反应力场的自动训练

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2017-12-06

PREAI

Trnka, Tomas; Tvaroska, Igor; Koca, Jaroslav