Jens Stoye - Publications, H-index & Citations

Jens Stoye

Bielefeld University

47H指数

254论文数

1.0W被引数

收录论文 36

发表时间

Applying rearrangement distances to enable plasmid epidemiology with pling

MICROBIAL GENOMICS

IF4

2024-10-14

OAAI

Frolova, Daria; Lima, Leandro; Roberts, Leah Wendy; Bohnenkaemper, Leonard; Wittler, Roland; Stoye, Jens; Iqbal, Zamin

HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets HaploBlocks: 在大群体基因组数据集中有效检测正选择

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-02-15

OAAI

Kirsch-Gerweck, Benedikt; Bohnenkaemper, Leonard; Henrichs, Michel T.; Alanko, Jarno N.; Bannai, Hideo; Cazaux, Bastien; Peterlongo, Pierre; Burger, Joachim; Stoye, Jens; Diekmann, Yoan

Computing the Inversion-Indel Distance

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2021-11-01

OAAI

Willing, Eyla; Stoye, Jens; Braga, Marilia D., V

Y Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants Y分析局部基因组重排可提高植物祖先基因组图谱的分辨率

BMC GENOMICS

IF3.7

2020-04-16

OAAI

Rubert, Diego P.; Martinez, Fabio, V; Stoye, Jens; Doerr, Daniel

Horizontal Gene Transfer Phylogenetics: A Random Walk Approach

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2019-12-23

OAAI

Sevillya, Gur; Doerr, Daniel; Lerner, Yael; Stoye, Jens; Steel, Mike; Snir, Sagi

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

PLOS PATHOGENS

IF4.9

2019-01-23

OAAI

Oey, Harald; Zakrzewski, Martha; Gravermann, Kerstin; Young, Neil D.; Korhonen, Pasi K.; Gobert, Geoffrey N.; Nawaratna, Sujeevi; Hasan, Shihab; Martinez, David M.; You, Hong; Lavin, Martin; Jones, Malcolm K.; Ragan, Mark A.; Stoye, Jens; Oleaga, Ana; Emery, Aidan M.; Webster, Bonnie; Rollinson, David; Gasser, Robin B.; McManus, Donald P.; Krause, Lutz

Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2018-11-01

PREAI

Luhmann, Nina; Chauve, Cedric; Stoye, Jens; Wittler, Roland

GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data GraphTeams: 一种在hi-c测序数据中发现空间基因簇的方法

BMC GENOMICS

IF3.7

2018-05-08

OAAI

Schulz, Tizian; Stoye, Jens; Doerr, Daniel

Flexible metagenome analysis using the MGX framework 使用MGX框架进行灵活的宏基因组分析

MICROBIOME

IF12.7

2018-04-24

PREAI

Jaenicke, Sebastian; Albaum, Stefan P.; Blumenkamp, Patrick; Linke, Burkhard; Stoye, Jens; Goesmann, Alexander

Bioinformatics for NGS-based metagenomics and the application to biogas research

JOURNAL OF BIOTECHNOLOGY

IF3.9

2017-11-01

OAAI

Juenemann, Sebastian; Kleinboelting, Nils; Jaenicke, Sebastian; Henke, Christian; Hassa, Julia; Nelkner, Johanna; Stolze, Yvonne; Albaum, Stefan P.; Schlueter, Andreas; Goesmann, Alexander; Sczyrba, Alexander; Stoye, Jens

Finding approximate gene clusters with GECKO 3

NUCLEIC ACIDS RESEARCH

IF13.1

2016-09-26

OAAI

Winter, Sascha; Jahn, Katharina; Wehner, Stefanie; Kuchenbecker, Leon; Marz, Manja; Stoye, Jens; Boecker, Sebastian

Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma

CARCINOGENESIS

IF2.9

2016-02-10

OAAI

Krause, Lutz; Nones, Katia; Loffler, Kelly A.; Nancarrow, Derek; Oey, Harald; Tang, Yue Hang; Wayte, Nicola J.; Patch, Ann Marie; Patel, Kalpana; Brosda, Sandra; Manning, Suzanne; Lampe, Guy; Clouston, Andrew; Thomas, Janine; Stoye, Jens; Hussey, Damian J.; Watson, David I.; Lord, Reginald V.; Phillips, Wayne A.; Gotley, David; Smithers, B. Mark; Whiteman, David C.; Hayward, Nicholas K.; Grimmond, Sean M.; Waddell, Nicola; Barbour, Andrew P.

Sorting Linear Genomes with Rearrangements and Indels 具有重排和indel的线性基因组排序

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2015-05-01

PREAI

Braga, Marilia D. V.; Stoye, Jens

Improving the genome annotation of the acarbose producer Actinoplanes sp SE50/110 by sequencing enriched 5′-ends of primary transcripts

JOURNAL OF BIOTECHNOLOGY

IF3.9

2014-11-01

PREAI

Schwientek, Patrick; Neshat, Armin; Kalinowski, Joern; Klein, Andreas; Rueckert, Christian; Schneiker-Bekel, Susanne; Wendler, Sergej; Stoye, Jens; Puehler, Alfred

Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing

JOURNAL OF BIOTECHNOLOGY

IF3.9

2014-11-01

PREAI

Jakobi, Tobias; Brinkrolf, Karina; Tauch, Andreas; Noll, Thomas; Stoye, Jens; Puehler, Alfred; Goesmann, Alexander

Identifying gene clusters by discovering common intervals in indeterminate strings

BMC GENOMICS

IF3.7

2014-10-17

OAAI

Doerr, Daniel; Stoye, Jens; Boecker, Sebastian; Jahn, Katharina

Updating benchtop sequencing performance comparison (vol 31, pg 294, 2013)

NATURE BIOTECHNOLOGY

IF41.7

2013-12-01

OAAI

Juenemann, Sebastian; Sedlazeck, Fritz Joachim; Prior, Karola; Albersmeier, Andreas; John, Uwe; Kalinowski, Joehn; Mellmann, Alexander; Goesmann, Alexander; von Haeseler, Arndt; Stoye, Jens; Harmsen, Dag

Comparative RNA-sequencing of the acarbose producer Actinoplanes sp SE50/110 cultivated in different growth media

JOURNAL OF BIOTECHNOLOGY

IF3.9

2013-08-01

PREAI

Schwientek, Patrick; Wendler, Sergej; Neshat, Armin; Eirich, Christina; Rueckert, Christian; Klein, Andreas; Wehmeier, Udo F.; Kalinowski, Joern; Stoye, Jens; Puehler, Alfred

MetaSAMS-A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets MetaSAMS-一种用于宏基因组数据集的分类，功能注释和比较分析的新型软件平台

JOURNAL OF BIOTECHNOLOGY

IF3.9

2013-08-01

PREAI

Zakrzewski, Martha; Bekel, Thomas; Ander, Christina; Puehler, Alfred; Rupp, Oliver; Stoye, Jens; Schlueter, Andreas; Goesmann, Alexander

Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a β chain CDR3 sequence associated with hepatitis-induced pathogenesis

HAEMATOLOGICA

IF7.9

2013-05-28

OAAI

Krell, Pina F. I.; Reuther, Susanne; Fischer, Ute; Keller, Thomas; Weber, Stephan; Gombert, Michael; Schuster, Friedhelm R.; Asang, Corinna; Stepensky, Polina; Strahm, Brigitte; Meisel, Roland; Stoye, Jens; Borkhardt, Arndt

研究方向