Mariusz Popenda

Polish Academy of Sciences

H指数:22

被引数:2,869

个人简介

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教育背景

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工作经历

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荣誉奖项

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RNA-Puzzles Round V: blind predictions of 23 RNA structures

NATURE METHODS

IF32.1

2024-12-020

OAAI

Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W.; Antczak, Maciej; de Aquino, Belisa Rebeca H.; Badepally, Nagendar Goud; Batey, Robert T.; Baulin, Eugene F.; Boinski, Pawel; Boniecki, Michal J.; Bujnicki, Janusz M.; Carpenter, Kristy A.; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K.; Dimaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V.; Dror, Ron O.; Dunin-Horkawicz, Stanislaw; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferre-D'Amare, Adrian R.; Geniesse, Caleb; Ghanim, George E.; Guzman, Horacio V.; Hood, Iris V.; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S.; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C.; Kurcinski, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, Benoit; Moafinejad, S. Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P. N.; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A.; Pilla, Smita Priyadarshini; Pluta, Radoslaw; Poblete, Simon; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C.; Szachniuk, Marta; Townshend, Raphael; Trachman III, Robert J.; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K.; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Zyla, Adriana; Westhof, Eric; Miao, Zhichao

RNA tertiary structure prediction using RNAComposer in CASP15

在CASP15中使用RNAComposer预测RNA三级结构

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2023-08-2430

RNAspider: a webserver to analyze entanglements in RNA 3D structures

NUCLEIC ACIDS RESEARCH

IF13.1

2022-03-297

OAAI

Entanglements of structure elements revealed in RNA 3D models

NUCLEIC ACIDS RESEARCH

IF13.1

2021-08-2516

OAAI

The model structure of the hammerhead ribozyme formed by RNAs of reciprocal chirality

BIOSCIENCE REPORTS

IF4.7

2021-01-080

OAAI

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

RNA

IF5

2020-05-05103

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Boniecki, Michal J.; Bujnicki, Janusz; Chen, Shi-Jie; Cheng, Clarence Yu; Cheng, Yi; Chou, Fang-Chieh; Das, Rhiju; Dokholyan, Nikolay, V; Ding, Feng; Geniesse, Caleb; Jiang, Yangwei; Joshi, Astha; Krokhotin, Andrey; Magnus, Marcin; Mailhot, Olivier; Major, Francois; Mann, Thomas H.; Piatkowski, Pawel; Pluta, Radoslaw; Popenda, Mariusz; Sarzynska, Joanna; Sun, Lizhen; Szachniuk, Marta; Tian, Siqi; Wang, Jian; Wang, Jun; Watkins, Andrew M.; Wiedemann, Jakub; Xiao, Yi; Xu, Xiaojun; Yesselman, Joseph D.; Zhang, Dong; Zhang, Yi; Zhang, Zhenzhen; Zhao, Chenhan; Zhao, Peinan; Zhou, Yuanzhe; Zok, Tomasz; Zyla, Adriana; Ren, Aiming; Batey, Robert T.; Golden, Barbara L.; Huang, Lin; Lilley, David M.; Liu, Yijin; Patel, Dinshaw J.; Westhof, Eric

RNApdbee 2.0: multifunctional tool for RNA structure annotation

NUCLEIC ACIDS RESEARCH

IF13.1

2018-04-3083

OAAI

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

RNA

IF5

2017-01-30163

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Batey, Robert T.; Becka, Alexander J.; Biesiada, Marcin; Boniecki, Michat J.; Bujnicki, Janusz M.; Chen, Shi-Jie; Cheng, Clarence Yu; Chou, Fang-Chieh; Ferre-D'Amare, Adrian R.; Das, Rhiju; Dawson, Wayne K.; Ding, Feng; Dokholyan, Nikolay V.; Dunin-Horkawicz, Stanistaw; Geniesse, Caleb; Kappel, Kalli; Kladwang, Wipapat; Krokhotin, Andrey; Lach, Grzegorz E.; Major, Francois; Mann, Thomas H.; Magnus, Marcin; Pachulska-Wieczorek, Katarzyna; Patel, Dinshaw J.; Piccirilli, Joseph A.; Popenda, Mariusz; Purzycka, Katarzyna J.; Ren, Aiming; Rice, Greggory M.; Santalucia, John, Jr.; Sarzynska, Joanna; Szachniuk, Marta; Tandon, Arpit; Trausch, Jeremiah J.; Tian, Siqi; Wang, Jian; Weeks, Kevin M.; Williams, Benfeard, II; Xiao, Yi; Xu, Xiaojun; Zhang, Dong; Zok, Tomasz; Westhof, Eric

RNAssess-a web server for quality assessment of RNA 3D structures

NUCLEIC ACIDS RESEARCH

IF13.1

2015-06-1123

OAAI

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

RNA

IF5

2015-04-16158

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Blanchet, Marc-Frederick; Boniecki, Michal; Bujnicki, Janusz M.; Chen, Shi-Jie; Cheng, Clarence; Chojnowski, Grzegorz; Chou, Fang-Chieh; Cordero, Pablo; Cruz, Jose Almeida; Ferre-D'amare, Adrian R.; Das, Rhiju; Ding, Feng; Dokholyan, Nikolay V.; Dunin-Horkawicz, Stanislaw; Kladwang, Wipapat; Krokhotin, Andrey; Lach, Grzegorz; Magnus, Marcin; Major, Francois; Mann, Thomas H.; Masquida, Benoit; Matelska, Dorota; Meyer, Melanie; Peselis, Alla; Popenda, Mariusz; Purzycka, Katarzyna J.; Serganov, Alexander; Stasiewicz, Juliusz; Szachniuk, Marta; Tandon, Arpit; Tian, Siqi; Wang, Jian; Xia, Yi; Xu, Xiaojun; Zhang, Jinwei; Zha, Peinan; Zok, Tomasz; Westhof, Eric

RNApdbee-a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

NUCLEIC ACIDS RESEARCH

IF13.1

2014-04-2559

OAAI

RNAlyzer-novel approach for quality analysis of RNA structural models

NUCLEIC ACIDS RESEARCH

IF13.1

2013-04-2523

OAAI

Prediction of hammerhead ribozyme intracellular activity with the catalytic core fingerprint

BIOCHEMICAL JOURNAL