Robert G. Beiko - Publications, H-index & Citations

Robert G. Beiko

Dalhousie University

49H指数

191论文数

2.8W被引数

收录论文 59

发表时间

Sarand: exploring antimicrobial resistance gene neighbourhoods in complex metagenomic assembly graphs Sarand：在复杂宏基因组组装图中探索抗菌抗性基因邻域

NAR Genomics and Bioinformatics

IF2.8

2026-07-14

OAAI

Somayeh Kafaie; Shahlla Naseri; David B J Mahoney; Travis Gagie; Robert G Beiko; Finlay Maguire

ParallelEvolCCM: Quantifying Coevolutionary Patterns Among Genomic Features ParallelEvolCCM: 定量分析基因组特征间的协同进化模式

GENOME BIOLOGY AND EVOLUTION

IF2.8

2025-06-01

OAAI

Beiko, Robert G.; Liu, Chaoyue; Cavalcante, Joao Vitor; Fink, Ryan C.

The case for microbiome stewardship: what it is and how to get there 微生物组管理：它的内涵及实现路径

MSYSTEMS

IF4.6

2025-05-20

OAAI

Choudoir, Mallory J.; Ishaq, Suzanne L.; Beiko, Robert G.; Silva, Diego S.; Allen-Vercoe, Emma; O'Doherty, Kieran C.

Mock microbial community meta-analysis using different trimming of amplicon read lengths

ENVIRONMENTAL MICROBIOLOGY

IF4

2023-12-27

OAAI

Haider, Diana; Hall, Michael W.; LaRoche, Julie; Beiko, Robert G.

Integrating seascape resistances and gene flow to produce area-based metrics of functional connectivity for marine conservation planning

LANDSCAPE ECOLOGY

IF3.7

2023-06-02

OAAI

Wilcox, Mark. A. A.; Jeffery, Nicholas. W. W.; DiBacco, Claudio; Bradbury, Ian. R. R.; Lowen, Ben; Wang, Zeliang; Beiko, Robert. G. G.; Stanley, Ryan R. E.

Suspension of oral hygiene practices highlights key bacterial shifts in saliva, tongue, and tooth plaque during gingival inflammation and resolution (May, 10.1038/s43705-023-00258-0, 2023)

ISME COMMUNICATIONS

IF6.1

2023-05-31

OAAI

Hall, Michael William; Wellappuli, Nimali Chandhema; Huang, Ruo Chen; Wu, Kay; Lam, David King; Glogauer, Michael; Beiko, Robert Gerald; Senadheera, Dilani Braziunas

Compact and automated eDNA sampler for in situ monitoring of marine environments

SCIENTIFIC REPORTS

IF3.9

2023-03-30

OAAI

Hendricks, Andre; Mackie, Connor M.; Luy, Edward; Sonnichsen, Colin; Smith, James; Grundke, Iain; Tavasoli, Mahtab; Furlong, Arnold; Beiko, Robert G.; LaRoche, Julie; Sieben, Vincent

Suspension of oral hygiene practices highlights key bacterial shifts in saliva, tongue, and tooth plaque during gingival inflammation and resolution

ISME COMMUNICATIONS

IF6.1

2023-03-25

OAAI

Hall, Michael William; Wellappuli, Nimali Chandhema; Huang, Ruo Chen; Wu, Kay; Lam, David King; Glogauer, Michael; Beiko, Robert Gerald; Senadheera, Dilani Braziunas

Vaginal microbiota in women with spontaneous preterm labor versus those with term labor in Kenya: a case control study

BMC MICROBIOLOGY

IF4.2

2022-11-10

OAAI

Gulavi, Edgar; Mwendwa, Fridah; Atandi, David O.; Okiro, Patricia O.; Hall, Michael; Beiko, Robert G.; Adam, Rodney D.

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

NUCLEIC ACIDS RESEARCH

IF13.1

2022-10-20

485

OAAI

Alcock, Brian P.; Huynh, William; Chalil, Romeo; Smith, Keaton W.; Raphenya, Amogelang R.; Wlodarski, Mateusz A.; Edalatmand, Arman; Petkau, Aaron; Syed, Sohaib A.; Tsang, Kara K.; Baker, Sheridan J. C.; Dave, Mugdha; McCarthy, Madeline C.; Mukiri, Karyn M.; Nasir, Jalees A.; Golbon, Bahar; Imtiaz, Hamna; Jiang, Xingjian; Kaur, Komal; Kwong, Megan; Liang, Zi Cheng; Niu, Keyu C.; Shan, Prabakar; Yang, Jasmine Y. J.; Gray, Kristen L.; Hoad, Gemma R.; Jia, Baofeng; Bhando, Timsy; Carfrae, Lindsey A.; Farha, Maya A.; French, Shawn; Gordzevich, Rodion; Rachwalski, Kenneth; Tu, Megan M.; Bordeleau, Emily; Dooley, Damion; Griffiths, Emma; Zubyk, Haley L.; Brown, Eric D.; Maguire, Finlay; Beiko, Robert G.; Hsiao, William W. L.; Brinkman, Fiona S. L.; Van Domselaar, Gary; McArthur, Andrew G.

Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents

MICROBIAL GENOMICS

IF4

2022-09-30

OAAI

Sanderson, Haley; Gray, Kristen L.; Manuele, Alexander; Maguire, Finlay; Khan, Amjad; Liu, Chaoyue; Rudrappa, Chandana Navanekere; Nash, John H. E.; Robertson, James; Bessonov, Kyrylo; Oloni, Martins; Alcock, Brian P.; Raphenya, Amogelang R.; McAllister, Tim A.; Peacock, Sharon J.; Raven, Kathy E.; Gouliouris, Theodore; McArthur, Andrew G.; Brinkman, Fiona S. L.; Fink, Ryan C.; Zaheer, Rahat; Beiko, Robert G.

Machine Learning for Antimicrobial Resistance Prediction: Current Practice, Limitations, and Clinical Perspective

CLINICAL MICROBIOLOGY REVIEWS

IF19.3

2022-09-21

OAAI

Kim, Jee In; Maguire, Finlay; Tsang, Kara K.; Gouliouris, Theodore; Peacock, Sharon J.; McAllister, Tim A.; McArthur, Andrew G.; Beiko, Robert G.

The Community Coevolution Model with Application to the Study of Evolutionary Relationships between Genes Based on Phylogenetic Profiles

SYSTEMATIC BIOLOGY

IF5.7

2022-07-29

OAAI

Liu, Chaoyue; Kenney, Toby; Beiko, Robert G.; Gu, Hong

Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance 通过抗菌药物耐药性的计算机预测鉴定新型 β-内酰胺酶底物活性

MICROBIAL GENOMICS

IF4

2021-01-01

OAAI

Tsang, Kara K.; Maguire, Finlay; Zubyk, Haley L.; Chou, Sommer; Edalatmand, Arman; Wright, Gerard D.; Beiko, Robert G.; McArthur, Andrew G.

Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands 具有短读取的宏基因组组装的基因组装箱方法对于质粒和基因组岛不成比例地失败

MICROBIAL GENOMICS

IF4

2020-10-01

OAAI

Maguire, Finlay; Jia, Baofeng; Gray, Kristen L.; Lau, Wing Yin Venus; Beiko, Robert G.; Brinkman, Fiona S. L.

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

NUCLEIC ACIDS RESEARCH

IF13.1

2019-10-29

2.3K

OAAI

Alcock, Brian P.; Raphenya, Amogelang R.; Lau, Tammy T. Y.; Tsang, Kara K.; Bouchard, Megane; Edalatmand, Arman; Huynh, William; Nguyen, Anna-Lisa, V; Cheng, Annie A.; Liu, Sihan; Min, Sally Y.; Miroshnichenko, Anatoly; Tran, Hiu-Ki; Werfalli, Rafik E.; Nasir, Jalees A.; Oloni, Martins; Speicher, David J.; Florescu, Alexandra; Singh, Bhavya; Faltyn, Mateusz; Hernandez-Koutoucheva, Anastasia; Sharma, Arjun N.; Bordeleau, Emily; Pawlowski, Andrew C.; Zubyk, Haley L.; Dooley, Damion; Griffiths, Emma; Maguire, Finlay; Winsor, Geoff L.; Beiko, Robert G.; Brinkman, Fiona S. L.; Hsiao, William W. L.; Domselaar, Gary, V; McArthur, Andrew G.

Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning

MSYSTEMS

IF4.6

2019-08-27

OAAI

Maguire, Finlay; Rehman, Muhammad Attiq; Carrillo, Catherine; Diarra, Moussa S.; Beiko, Robert G.

RADProc: A computationally efficient de novo locus assembler for population studies using RADseq data

MOLECULAR ECOLOGY RESOURCES

IF5.5

2018-12-21

PREAI

Ravindran, Praveen Nadukkalam; Bentzen, Paul; Bradbury, Ian R.; Beiko, Robert G.

Cellulase-Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems

MICROBIAL ECOLOGY

IF4

2018-09-12

PREAI

Houfani, Aicha Asma; Vetrovsky, Toms; Navarrete, Oscar U.; Stursova, Martina; Tlaskal, Vojtech; Beiko, Robert G.; Boucherba, Nawel; Baldrian, Petr; Benallaoua, Said; Jorquera, Milko A.

Phylogenetic Clustering of Genes Reveals Shared Evolutionary Trajectories and Putative Gene Functions 基因的系统发育聚类揭示了共同的进化轨迹和推定的基因功能

GENOME BIOLOGY AND EVOLUTION

IF2.8

2018-08-20

OAAI

Liu, Chaoyue; Wright, Benjamin; Allen-Vercoe, Emma; Gu, Hong; Beiko, Robert

研究方向