Isabel Rocha - Publications, H-index & Citations

Isabel Rocha

universidade do minho

37H指数

382论文数

5.5K被引数

收录论文 59

发表时间

From plastic waste to bioprocesses: Using ethylene glycol from polyethylene terephthalate biodegradation to fuel Escherichia coli metabolism and produce value-added compounds

metabolic engineering

IF4.1

2024-12-01

OAAI

Balola, Alexandra; Ferreira, Sofia; Rocha, Isabel

OsTH1 is a key player in thiamin biosynthesis in rice

SCIENTIFIC REPORTS

IF3.9

2024-06-12

OAAI

Faustino, Maria; Lourenco, Tiago; Strobbe, Simon; Cao, Da; Fonseca, Andre; Rocha, Isabel; van der Straeten, Dominique; Oliveira, M. Margarida

Mathematical kinetic modelling followed by in vitro and in vivo assays reveal the bifunctional rice GTPCHII/DHBPS enzymes and demonstrate the key roles of OsRibA proteins in the vitamin B2 pathway

BMC PLANT BIOLOGY

IF4.8

2024-03-26

OAAI

Faustino, Maria; Lourenco, Tiago; Strobbe, Simon; Cao, Da; Fonseca, Andre; Rocha, Isabel; Van Der Straeten, Dominique; Oliveira, M. Margarida

The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber

plos biology

IF3.6

2023-09-20

OAAI

Cunha, Emanuel; Silva, Miguel; Chaves, Ines; Demirci, Huseyin; Lagoa, Davide Rafael; Lima, Diogo; Rocha, Miguel; Rocha, Isabel; Dias, Oscar

Ecological modelling approaches for predicting emergent properties in microbial communities 预测微生物群落中出现的特性的生态建模方法

NATURE ECOLOGY & EVOLUTION

IF14.5

2022-05-16

OAAI

van den Berg, Naomi Iris; Machado, Daniel; Santos, Sophia; Rocha, Isabel; Chacon, Jeremy; Harcombe, William; Mitri, Sara; Patil, Kiran R.

Model-guided development of an evolutionarily stable yeast chassis 模型指导的进化稳定酵母底盘的开发

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2021-07-22

OAAI

Pereira, Filipa; Lopes, Helder; Maia, Paulo; Meyer, Britta; Nocon, Justyna; Jouhten, Paula; Konstantinidis, Dimitrios; Kafkia, Eleni; Rocha, Miguel; Koetter, Peter; Rocha, Isabel; Patil, Kiran R.

Enhancing acetic acid and 5-hydroxymethyl furfural tolerance of C. saccharoperbutylacetonicum through adaptive laboratory evolution

PROCESS BIOCHEMISTRY

IF4

2021-02-01

OAAI

Alves, Rafael F.; Zetty-Arenas, Ana M.; Demirci, Huseyin; Dias, Oscar; Rocha, Isabel; Basso, Thiago O.; Freitas, Sindelia

A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation

BIOCHEMICAL SOCIETY TRANSACTIONS

IF4.3

2020-09-17

OAAI

Cruz, Fernando; Faria, Jose P.; Rocha, Miguel; Rocha, Isabel; Dias, Oscar

Metabolic engineering strategies for butanol production in Escherichia coli

BIOTECHNOLOGY AND BIOENGINEERING

IF3.6

2020-06-04

OAAI

Ferreira, Sofia; Pereira, Rui; Wahl, S. A.; Rocha, Isabel

MEMOTE for standardized genome-scale metabolic model testing (vol 38, pg 272, 2020)标准化基因组规模代谢模型测试备忘录 (第38卷，272页，2020页)

NATURE BIOTECHNOLOGY

IF41.7

2020-03-19

OAAI

Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Draeger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, Jose P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; Garcia-Jimenez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgard, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; Koenig, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sanchez, Benjamin J.; Schaap, Peter J.; Sheriff, Rahuman S. Malik; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaca, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng

MEMOTE for standardized genome-scale metabolic model testing 标准化基因组规模代谢模型测试备忘录

NATURE BIOTECHNOLOGY

IF41.7

2020-03-02

283

OAAI

Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Draeger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, Jose P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; Garcia-Jimenez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgard, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; Koenig, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sanchez, Benjamin J.; Schaap, Peter J.; Malik Sheriff, Rahuman S.; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaca, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng

Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate

BIOTECHNOLOGY FOR BIOFUELS

IF6.1

2019-09-30

OAAI

Ferreira, Sofia; Pereira, Rui; Liu, Filipe; Vilaca, Paulo; Rocha, Isabel

Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production

BMC BIOTECHNOLOGY

IF3.4

2019-06-28

OAAI

Fernandes, Bruna S.; Dias, Oscar; Costa, Gisela; Kaupert Neto, Antonio A.; Resende, Tiago F. C.; Oliveira, Juliana V. C.; Riano-Pachon, Diego M.; Zaiat, Marcelo; Pradella, Jose G. C.; Rocha, Isabel

iDS372, a Phenotypically Reconciled Model for the Metabolism of Streptococcus pneumoniae Strain R6

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-06-25

OAAI

Dias, Oscar; Saraiva, Joao; Faria, Cristiana; Ramirez, Mario; Pinto, Francisco; Rocha, Isabel

Turnover Dependent Phenotypic Simulation: A Quantitative Constraint-Based Simulation Method That Accommodates All Main Strain Design Strategies

ACS SYNTHETIC BIOLOGY

IF3.9

2019-03-29

OAAI

Pereira, Rui; Vilaca, Paulo; Maia, Paulo; Nielsen, Jens; Rocha, Isabel

Mapping Salmonella typhimurium pathways using 13C metabolic flux analysis

METABOLIC ENGINEERING

IF6.8

2019-03-01

PREAI

Correia, Daniela M.; Sargo, Cintia R.; Silva, Adilson J.; Santos, Sophia T.; Giordano, Roberto C.; Ferreira, Eugenio C.; Zangirolami, Teresa C.; Ribeiro, Marcelo P. A.; Rocha, Isabel

Modulation of the central carbon metabolism of Corynebacterium glutamicum improves malonyl-CoA availability and increases plant polyphenol synthesis

BIOTECHNOLOGY AND BIOENGINEERING

IF3.6

2019-02-28

OAAI

Milke, Lars; Ferreira, Patricia; Kallscheuer, Nicolai; Braga, Adelaide; Vogt, Michael; Kappelmann, Jannick; Oliveira, Joana; Silva, Ana Rita; Rocha, Isabel; Bott, Michael; Noack, Stephan; Faria, Nuno; Marienhagen, Jan

Production of mannosylglycerate in Saccharomyces cerevisiae by metabolic engineering and bioprocess optimization

MICROBIAL CELL FACTORIES

IF4.9

2018-11-16

OAAI

Faria, Cristiana; Borges, Nuno; Rocha, Isabel; Santos, Helena

Identification and Microbial Production of the Raspberry Phenol Salidroside that Is Active against Huntington's Disease

PLANT PHYSIOLOGY

IF6.9

2018-11-05

OAAI

Kallscheuer, Nicolai; Menezes, Regina; Foito, Alexandre; da Silva, Marcelo Henriques; Braga, Adelaide; Dekker, Wijbrand; Sevillano, David Mendez; Rosado-Ramos, Rita; Jardim, Carolina; Oliveira, Joana; Ferreira, Patricia; Rocha, Isabel; Silva, Ana Rita; Sousa, Marcio; Allwood, J. William; Bott, Michael; Faria, Nuno; Stewart, Derek; Ottens, Marcel; Naesby, Michael; dos Santos, Claudia Nunes; Marienhagen, Jan

Methods for automated genome-scale metabolic model reconstruction

BIOCHEMICAL SOCIETY TRANSACTIONS

IF4.3

2018-07-31

OAAI

Faria, Jose P.; Rocha, Miguel; Rocha, Isabel; Henry, Christopher S.

研究方向