Daniel Machado - Publications, H-index & Citations

Daniel Machado

NTNU

22H指数

77论文数

3.9K被引数

收录论文 22

发表时间

A database of over 14,000 strain design publications reveals a conserved set of metabolic engineering targets across microbial hosts and products 包含超过14,000篇菌株设计出版物的数据库揭示了跨微生物宿主和产品的保守代谢工程靶点集合。

Metabolic Engineering

IF6.8

2026-04-01

OAAI

Elisa Márquez-Zavala; Francesca Di Bartolomeu; Daniel Machado

Genome-scale metabolic modeling of Ruminiclostridium cellulolyticum: a microbial cell factory for valorization of lignocellulosic biomass Ruminiclostridium cellulolyticum基因组规模代谢建模：一种用于木质纤维素生物质增值的微生物细胞工厂

MSYSTEMS

IF4.6

2025-09-01

PREAI

Burgos, Idun; Oyas, Ove; Perret, Stephanie; Fierobe, Henri-Pierre; Machado, Daniel

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells (Vol 45, pg 149, 2018)

METABOLIC ENGINEERING

IF6.8

2024-03-01

OAAI

Gonsalves, Emanuel; Sciacovelli, Marco; Costa, Ana S. H.; Tran, Maxine Gia Binh; Johnson, Timothy Isaac; Machado, Daniel; Frezza, Christian; Saez-Rodriguez, Julio

A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities

MSYSTEMS

IF4.6

2024-02-20

OAAI

Machado, Daniel

Life cycle assessment of energy saving and circular economy strategies: contributions to the environmental footprint lemon and by-product production in Argentina

CLEAN TECHNOLOGIES AND ENVIRONMENTAL POLICY

IF3.9

2023-12-25

PREAI

Martinez, Maria Emilia Inigo; Diaz, Gisela Florencia; Machado, Daniel; De Nucci, Patricia Garolera; Paz, Dora; Arena, Pablo

Microbial interactions shape cheese flavour formation 微生物相互作用塑造奶酪风味形成

NATURE COMMUNICATIONS

IF15.7

2023-12-21

OAAI

Melkonian, Chrats; Zorrilla, Francisco; Kjaerbolling, Inge; Blasche, Sonja; Machado, Daniel; Junge, Mette; Sorensen, Kim Ib; Andersen, Lene Tranberg; Patil, Kiran R.; Zeidan, Ahmad A.

Reply to: Erroneous predictions of auxotrophies by CarveMe

NATURE ECOLOGY & EVOLUTION

IF14.5

2022-12-05

PREAI

Machado, Daniel; Patil, Kiran R. R.

The genomic basis of the plant island syndrome in Darwin's giant daisies

NATURE COMMUNICATIONS

IF15.7

2022-06-28

OAAI

Cerca, Jose; Petersen, Bent; Lazaro-Guevara, Jose Miguel; Rivera-Colon, Angel; Birkeland, Siri; Vizueta, Joel; Li, Siyu; Li, Qionghou; Loureiro, Joao; Kosawang, Chatchai; Diaz, Patricia Jaramillo; Rivas-Torres, Gonzalo; Fernandez-Mazuecos, Mario; Vargas, Pablo; McCauley, Ross A.; Petersen, Gitte; Santos-Bay, Luisa; Wales, Nathan; Catchen, Julian M.; Machado, Daniel; Nowak, Michael D.; Suh, Alexander; Sinha, Neelima R.; Nielsen, Lene R.; Seberg, Ole; Gilbert, M. Thomas P.; Leebens-Mack, James H.; Rieseberg, Loren H.; Martin, Michael D.

Ecological modelling approaches for predicting emergent properties in microbial communities 预测微生物群落中出现的特性的生态建模方法

NATURE ECOLOGY & EVOLUTION

IF14.5

2022-05-16

OAAI

van den Berg, Naomi Iris; Machado, Daniel; Santos, Sophia; Rocha, Isabel; Chacon, Jeremy; Harcombe, William; Mitri, Sara; Patil, Kiran R.

Metabolic memory underlying minimal residual disease in breast cancer

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2021-10-25

OAAI

Shechter, Ksenija Radic; Kafkia, Eleni; Zirngibl, Katharina; Gawrzak, Sylwia; Alladin, Ashna; Machado, Daniel; Luechtenborg, Christian; Sevin, Daniel C.; Bruegger, Britta; Patil, Kiran R.; Jechlinger, Martin

Unlocking the genomic potential of aerobes and phototrophs for the production of nutritious and palatable microbial food without arable land or fossil fuels

MICROBIAL BIOTECHNOLOGY

IF5.2

2021-02-02

OAAI

Alloul, Abbas; Spanoghe, Janne; Machado, Daniel; Vlaeminck, Siegfried E.

Polarization of microbial communities between competitive and cooperative metabolism 微生物群落在竞争代谢和合作代谢之间的极化

NATURE ECOLOGY & EVOLUTION

IF14.5

2021-01-04

149

OAAI

Machado, Daniel; Maistrenko, Oleksandr M.; Andrejev, Sergej; Kim, Yongkyu; Bork, Peer; Patil, Kaustubh R.; Patil, Kiran R.

Stigmatizing Attitudes Toward Patients With Psychiatric Disorders Among Medical Students and Professionals

FRONTIERS IN PSYCHIATRY

IF3.2

2020-04-30

OAAI

Oliveira, Ana Margarida; Machado, Daniel; Fonseca, Joao B.; Palha, Filipa; Moreira, Pedro Silva; Sousa, Nuno; Cerqueira, Joao J.; Morgado, Pedro

MEMOTE for standardized genome-scale metabolic model testing (vol 38, pg 272, 2020)标准化基因组规模代谢模型测试备忘录 (第38卷，272页，2020页)

NATURE BIOTECHNOLOGY

IF41.7

2020-03-19

OAAI

Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Draeger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, Jose P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; Garcia-Jimenez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgard, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; Koenig, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sanchez, Benjamin J.; Schaap, Peter J.; Sheriff, Rahuman S. Malik; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaca, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng

MEMOTE for standardized genome-scale metabolic model testing 标准化基因组规模代谢模型测试备忘录

NATURE BIOTECHNOLOGY

IF41.7

2020-03-02

283

OAAI

Lieven, Christian; Beber, Moritz E.; Olivier, Brett G.; Bergmann, Frank T.; Ataman, Meric; Babaei, Parizad; Bartell, Jennifer A.; Blank, Lars M.; Chauhan, Siddharth; Correia, Kevin; Diener, Christian; Draeger, Andreas; Ebert, Birgitta E.; Edirisinghe, Janaka N.; Faria, Jose P.; Feist, Adam M.; Fengos, Georgios; Fleming, Ronan M. T.; Garcia-Jimenez, Beatriz; Hatzimanikatis, Vassily; van Helvoirt, Wout; Henry, Christopher S.; Hermjakob, Henning; Herrgard, Markus J.; Kaafarani, Ali; Kim, Hyun Uk; King, Zachary; Klamt, Steffen; Klipp, Edda; Koehorst, Jasper J.; Koenig, Matthias; Lakshmanan, Meiyappan; Lee, Dong-Yup; Lee, Sang Yup; Lee, Sunjae; Lewis, Nathan E.; Liu, Filipe; Ma, Hongwu; Machado, Daniel; Mahadevan, Radhakrishnan; Maia, Paulo; Mardinoglu, Adil; Medlock, Gregory L.; Monk, Jonathan M.; Nielsen, Jens; Nielsen, Lars Keld; Nogales, Juan; Nookaew, Intawat; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Poolman, Mark; Price, Nathan D.; Resendis-Antonio, Osbaldo; Richelle, Anne; Rocha, Isabel; Sanchez, Benjamin J.; Schaap, Peter J.; Malik Sheriff, Rahuman S.; Shoaie, Saeed; Sonnenschein, Nikolaus; Teusink, Bas; Vilaca, Paulo; Vik, Jon Olav; Wodke, Judith A. H.; Xavier, Joana C.; Yuan, Qianqian; Zakhartsev, Maksim; Zhang, Cheng

Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations

GIGASCIENCE

IF3.9

2019-01-31

OAAI

Kang, Kang; Bergdahl, Basti; Machado, Daniel; Dato, Laura; Han, Ting-Li; Li, Jun; Villas-Boas, Silas; Herrgard, Markus J.; Forster, Jochen; Panagiotou, Gianni

Fast automated reconstruction of genome-scale metabolic models for microbial species and communities 微生物物种和群落的基因组规模代谢模型的快速自动重建

NUCLEIC ACIDS RESEARCH

IF13.1

2018-06-21

380

OAAI

Machado, Daniel; Andrejev, Sergej; Tramontano, Melanie; Patil, Kiran Raosaheb

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells

METABOLIC ENGINEERING

IF6.8

2018-01-01

OAAI

Goncalves, Emanuel; Sciacovelli, Marco; Costa, Ana S. H.; Tran, Maxine Gia Binh; Johnson, Timothy Isaac; Machado, Daniel; Frezza, Christian; Saez-Rodriguez, Julio

Current state and challenges for dynamic metabolic modeling

CURRENT OPINION IN MICROBIOLOGY

IF7.5

2016-10-01

OAAI

Vasilakou, Eleni; Machado, Daniel; Theorell, Axel; Rocha, Isabel; Noeh, Katharina; Oldiges, Marco; Wahl, S. Aljoscha

Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes

CELL SYSTEMS

IF7.7

2016-09-01

111

OAAI

Monk, Jonathan M.; Koza, Anna; Campodonico, Miguel A.; Machado, Daniel; Seoane, Jose Miguel; Palsson, Bernhard O.; Herrgard, Markus J.; Feist, Adam M.

研究方向