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Vassily Hatzimanikatis

EPFL

64H指数
430论文数
1.3W被引数
收录论文 83
发表时间
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Generative approaches to kinetic parameter inference in metabolic networks via latent space exploration代谢网络中通过潜在空间探索的动力学参数推断生成方法
errNature Communications
IF15.7
err2026-04-20
err0
errOAAI
errSubham Choudhury; Ilias Toumpe; Oussama Gabouj; Jakob Sebastian Behler; Vassily Hatzimanikatis; Ljubisa Miskovic
err分享
err收藏
Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production基于动力学模型指导的多株S. cerevisiae菌株工程改造提高了对香豆酸产量
errMetabolic Engineering
IF6.8
err2025-06-18
err0
errOAAI
errBharath Narayanan; Wei Jiang; Shengbao Wang; Javier Sáez-Sáez; Daniel Weilandt; Maria Masid Barcon; Viktor Hesselberg-Thomsen; Irina Borodina; Vassily Hatzimanikatis; Ljubisa Miskovic
err分享
err收藏
Host cell CRISPR genomics and modelling reveal shared metabolic vulnerabilities in the intracellular development of Plasmodium falciparum and related hemoparasites
errNATURE COMMUNICATIONS
IF15.7
err2024-07-21
err1
errOAAI
errMaurizio, Marina; Masid, Maria; Woods, Kerry; Caldelari, Reto; Doench, John G.; Naguleswaran, Arunasalam; Joly, Denis; Gonzalez-Fernandez, Martin; Zemp, Jonas; Borteele, Melanie; Hatzimanikatis, Vassily; Heussler, Volker; Rottenberg, Sven; Olias, Philipp
err分享
err收藏
Genome-scale models of metabolism and expression predict the metabolic burden of recombinant protein expression
errMETABOLIC ENGINEERING
IF6.8
err2024-07-01
err4
errOAAI
errOftadeh, Omid; Hatzimanikatis, Vassily
err分享
err收藏
Rational strain design with minimal phenotype perturbation
errNATURE COMMUNICATIONS
IF15.7
err2024-01-24
err3
errOAAI
errNarayanan, Bharath; Weilandt, Daniel; Masid, Maria; Miskovic, Ljubisa; Hatzimanikatis, Vassily
err分享
err收藏
From microbiome composition to functional engineering, one step at a time
errMICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
IF7.8
err2023-12-20
err9
errOAAI
errBurz, Sebastian Dan; Causevic, Senka; Dal Co, Alma; Dmitrijeva, Marija; Engel, Philipp; Garrido-Sanz, Daniel; Greub, Gilbert; Hapfelmeier, Siegfried; Hardt, Wolf-Dietrich; Hatzimanikatis, Vassily; Heiman, Clara Margot; Herzog, Mathias Klaus-Maria; Hockenberry, Alyson; Keel, Christoph; Keppler, Andreas; Lee, Soon-Jae; Luneau, Julien; Malfertheiner, Lukas; Mitri, Sara; Ngyuen, Bidong; Oftadeh, Omid; Pacheco, Alan R.; Peaudecerf, Francois; Resch, Gregory; Ruscheweyh, Hans-Joachim; Sahin, Asli; Sanders, Ian R.; Slack, Emma; Sunagawa, Shinichi; Tackmann, Janko; Tecon, Robin; Ugolini, Giovanni Stefano; Vacheron, Jordan; van der Meer, Jan Roelof; Vayena, Evangelia; Vonaesch, Pascale; Vorholt, Julia A.
err分享
err收藏
Optimal enzyme utilization suggests that concentrations and thermodynamics determine binding mechanisms and enzyme saturations
errNATURE COMMUNICATIONS
IF15.7
err2023-05-05
err7
errOAAI
errSahin, Asli; Weilandt, Daniel R.; Hatzimanikatis, Vassily
err分享
err收藏
Dynamics of CLIMP-63 S-acylation control ER morphology
errNATURE COMMUNICATIONS
IF15.7
err2023-01-17
err10
errOAAI
errSandoz, Patrick A.; Denhardt-Eriksson, Robin A.; Abrami, Laurence; Abriata, Luciano A.; Spreemann, Gard; Maclachlan, Catherine; Ho, Sylvia; Kunz, Beatrice; Hess, Kathryn; Knott, Graham; S. Mesquita, Francisco; Hatzimanikatis, Vassily; van der Goot, F. Gisou
err分享
err收藏
Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression
errNATURE COMMUNICATIONS
IF15.7
err2022-12-20
err11
errOAAI
errSciacovelli, Marco; Dugourd, Aurelien; Jimenez, Lorea Valcarcel; Yang, Ming; Nikitopoulou, Efterpi; Costa, Ana S. H.; Tronci, Laura; Caraffini, Veronica; Rodrigues, Paulo; Schmidt, Christina; Ryan, Dylan Gerard; Young, Timothy; Zecchini, Vincent R.; Rossi, Sabrina H.; Massie, Charlie; Lohoff, Caroline; Masid, Maria; Hatzimanikatis, Vassily; Kuppe, Christoph; Von Kriegsheim, Alex; Kramann, Rafael; Gnanapragasam, Vincent; Warren, Anne Y.; Stewart, Grant D.; Erez, Ayelet; Vanharanta, Sakari; Saez-Rodriguez, Julio; Frezza, Christian
err分享
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A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2022-11-07
err9
errOAAI
errVayena, Evangelia; Chiappino-Pepe, Anush; MohammadiPeyhani, Homa; Francioli, Yannick; Hadadi, Noushin; Ataman, Meric; Hafner, Jasmin; Pavlou, Stavros; Hatzimanikatis, Vassily
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err收藏
Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks
errNATURE MACHINE INTELLIGENCE
IF23.9
err2022-08-30
err32
errOAAI
errChoudhury, Subham; Moret, Michael; Salvy, Pierre; Weilandt, Daniel; Hatzimanikatis, Vassily; Miskovic, Ljubisa
err分享
err收藏
Computational tools and resources for designing new pathways to small molecules
errCURRENT OPINION IN BIOTECHNOLOGY
IF7
err2022-08-01
err14
errOAAI
errSveshnikova, Anastasia; MohammadiPeyhani, Homa; Hatzimanikatis, Vassily
err分享
err收藏
ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds
errMETABOLIC ENGINEERING
IF6.8
err2022-07-01
err5
errOAAI
errSveshnikova, Anastasia; MohammadiPeyhani, Homa; Hatzimanikatis, Vassily
err分享
err收藏
Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx
errNATURE COMMUNICATIONS
IF15.7
err2022-03-23
err22
errOAAI
errMohammadiPeyhani, Homa; Hafner, Jasmin; Sveshnikova, Anastasia; Viterbo, Victor; Hatzimanikatis, Vassily
err分享
err收藏
Editorial Overview: Mathematical modeling: It's a matter of scale
errCURRENT OPINION IN SYSTEMS BIOLOGY
IF2.2
err2021-12-01
err1
PREAI
errFinley, Stacey D.; Hatzimanikatis, Vassily
err分享
err收藏
A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics
errNATURE COMMUNICATIONS
IF15.7
err2021-08-09
err53
errOAAI
errOftadeh, Omid; Salvy, Pierre; Masid, Maria; Curvat, Maxime; Miskovic, Ljubisa; Hatzimanikatis, Vassily
err分享
err收藏
NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism
errELIFE
IF0
err2021-08-03
err7
errOAAI
errMohammadiPeyhani, Homa; Chiappino-Pepe, Anush; Haddadi, Kiandokht; Hafner, Jasmin; Hadadi, Noushin; Hatzimanikatis, Vassily
err分享
err收藏
Constraint-based metabolic control analysis for rational strain engineering
errMETABOLIC ENGINEERING
IF6.8
err2021-07-01
err13
errOAAI
errTsouka, Sophia; Ataman, Meric; Hameri, Tuure; Miskovic, Ljubisa; Hatzimanikatis, Vassily
err分享
err收藏
Quantitative modeling of human metabolism: A call for a community effort
errCURRENT OPINION IN SYSTEMS BIOLOGY
IF2.2
err2021-06-01
err5
errOAAI
errMasid, Maria; Hatzimanikatis, Vassily
err分享
err收藏
A computational workflow for the expansion of heterologous biosynthetic pathways to natural product derivatives将异源生物合成途径扩展为天然产物衍生物的计算工作流程
errNATURE COMMUNICATIONS
IF15.7
err2021-03-19
err52
errOAAI
errHafner, Jasmin; Payne, James; MohammadiPeyhani, Homa; Hatzimanikatis, Vassily; Smolke, Christina
err分享
err收藏

研究方向

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