Ljubiša Mišković - Publications, H-index & Citations

Ljubiša Mišković

EPFL

27H指数

161论文数

2.3K被引数

收录论文 26

发表时间

Generative approaches to kinetic parameter inference in metabolic networks via latent space exploration 代谢网络中通过潜在空间探索的动力学参数推断生成方法

Nature Communications

IF15.7

2026-04-20

OAAI

Subham Choudhury; Ilias Toumpe; Oussama Gabouj; Jakob Sebastian Behler; Vassily Hatzimanikatis; Ljubisa Miskovic

Kinetic-model-guided engineering of multiple S. cerevisiae strains improves p-coumaric acid production 基于动力学模型指导的多株S. cerevisiae菌株工程改造提高了对香豆酸产量

Metabolic Engineering

IF6.8

2025-06-18

OAAI

Bharath Narayanan; Wei Jiang; Shengbao Wang; Javier Sáez-Sáez; Daniel Weilandt; Maria Masid Barcon; Viktor Hesselberg-Thomsen; Irina Borodina; Vassily Hatzimanikatis; Ljubisa Miskovic

The Dawn of High-Throughput and Genome-Scale Kinetic Modeling: Recent Advances and Future Directions 高通量与基因组规模动力学建模的黎明：最新进展与未来方向

ACS SYNTHETIC BIOLOGY

IF3.9

2025-04-22

OAAI

Toumpe, I; Choudhury, S; Hatzimanikatis, V; Miskovic, L

Rational strain design with minimal phenotype perturbation

NATURE COMMUNICATIONS

IF15.7

2024-01-24

OAAI

Narayanan, Bharath; Weilandt, Daniel; Masid, Maria; Miskovic, Ljubisa; Hatzimanikatis, Vassily

Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks

NATURE MACHINE INTELLIGENCE

IF23.9

2022-08-30

OAAI

Choudhury, Subham; Moret, Michael; Salvy, Pierre; Weilandt, Daniel; Hatzimanikatis, Vassily; Miskovic, Ljubisa

A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics

NATURE COMMUNICATIONS

IF15.7

2021-08-09

OAAI

Oftadeh, Omid; Salvy, Pierre; Masid, Maria; Curvat, Maxime; Miskovic, Ljubisa; Hatzimanikatis, Vassily

Constraint-based metabolic control analysis for rational strain engineering

METABOLIC ENGINEERING

IF6.8

2021-07-01

OAAI

Tsouka, Sophia; Ataman, Meric; Hameri, Tuure; Miskovic, Ljubisa; Hatzimanikatis, Vassily

Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies

BIOTECHNOLOGY FOR BIOFUELS

IF6.1

2020-02-28

OAAI

Tokic, Milenko; Hatzimanikatis, Vassily; Miskovic, Ljubisa

Control Theory Concepts for Modeling Uncertainty in Enzyme Kinetics of Biochemical Networks

INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

IF3.9

2019-05-10

OAAI

Miskovic, Ljubisa; Tokic, Milenko; Savoglidis, Georgios; Hatzimanikatis, Vassily

Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites 使用底物反应位点的知识对孤儿和新型反应进行酶注释

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-03-25

OAAI

Hadadi, Noushin; MohammadiPeyhani, Homa; Miskovic, Ljubisa; Seijo, Marianne; Hatzimanikatis, Vassily

Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations

METABOLIC ENGINEERING

IF6.8

2019-03-01

OAAI

Hameri, Tuure; Fengos, Georgios; Ataman, Meric; Miskovic, Ljubisa; Hatzimanikatis, Vassily

Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors

ACS SYNTHETIC BIOLOGY

IF3.9

2018-07-18

OAAI

Tokic, Milenko; Hadadi, Noushin; Ataman, Meric; Neves, Dario; Ebert, Birgitta E.; Blank, Lars M.; Miskovic, Ljubisa; Hatzimanikatis, Vassily

A design-build-test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models

BIOTECHNOLOGY FOR BIOFUELS

IF6.1

2017-06-26

OAAI

Miskovic, Ljubisa; Alff-Tuomala, Susanne; Soh, Keng Cher; Barth, Dorothee; Salusjarvi, Laura; Pitkanen, Juha-Pekka; Ruohonen, Laura; Penttila, Merja; Hatzimanikatis, Vassily

Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models

METABOLIC ENGINEERING

IF6.8

2016-05-01

OAAI

Andreozzi, Stefano; Chakrabarti, Anirikh; Soh, Keng Cher; Burgard, Anthony; Yang, Tae Hoon; Van Dien, Stephen; Miskovic, Ljubisa; Hatzimanikatis, Vassily

iSCHRUNK - In Silico Approach to Characterization and Reduction of Uncertainty in the Kinetic Models of Genome-scale Metabolic Networks

METABOLIC ENGINEERING

IF6.8

2016-01-01

OAAI

Andreozzi, Stefano; Miskovic, Ljubisa; Hatzimanikatis, Vassily

Rites of passage: requirements and standards for building kinetic models of metabolic phenotypes

CURRENT OPINION IN BIOTECHNOLOGY

IF7

2015-12-01

OAAI

Miskovic, Ljubisa; Tokic, Milenko; Fengos, Georgios; Hatzimanikatis, Vassily